Yamada Takuji 山田拓司

… Alternative Names

山田拓司

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Researcher Number	10437262
Other IDs
Affiliation (Current)	2025: 東京科学大学, 生命理工学院, 准教授
Affiliation (based on the past Project Information) *help	2021 – 2024: 東京工業大学, 生命理工学院, 准教授 2018: 東京工業大学, 生命理工学院, 准教授 2016: 東京工業大学, 生命理工学院, 准教授 2013 – 2015: 東京工業大学, 生命理工学研究科, 講師
Review Section/Research Field	Principal Investigator Genome biology / Science and Engineering Except Principal Investigator Basic Section 56030:Urology-related / Obstetrics and gynecology
Keywords	Principal Investigator バイオインフォマティクス / 代謝ネットワーク / メタゲノム / 腸内細菌 / データベース / ヒト腸内細菌 / メタゲノミクス / 応用微生物 / 酵素 / 遺伝子予測 … More Except Principal Investigator … More メタゲノム / メタゲノム解析 / エピゲノム / メタボローム解析 / 腸内細菌 / 前立腺癌 / GWAS / lifestyle / metagenome analysis / short chain fatty acid / metabolome analysis / life style / microbiome / prostate cancer / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / シングルセル解析 / オミックス解析 / ゲノム / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / 1細胞解析 / RNA-Seq / リシーケンシング / 新規ゲノム配列決定 / 次世代DNAシーケンサー / 生殖医学 / 産科学 / 炎症性疾患 / 子宮内膜症 / 早産 / 腸内細菌叢 Less

Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
Diagnostic strategy for prostate cancer based on multifaceted analyses of genetic background, life style and gut microbiome
- Principal Investigator
  
  野々村祝夫
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 56030:Urology-related
- Research Institution
  Osaka University
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Changes of intestinal microbiome of preterm labor cases and endometriosis cases by metagenome analysis.
- Principal Investigator
  
  SAITO Shigeru
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Obstetrics and gynecology
- Research Institution
  University of Toyama
真菌類ゲノムからの新規酵素遺伝子発見Principal Investigator
- Principal Investigator
  
  山田拓司
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Tokyo Institute of Technology
Understanding metabolic systems for human gut microbiomePrincipal Investigator
- Principal Investigator
  
  Yamada Takuji
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Genome biology
- Research Institution
  Tokyo Institute of Technology

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014

All Journal Article Presentation Book Patent

[Book] ゲノムでたどる古代の日本列島2023
- Author(s)
  斎藤成也監修・著、山田康弘、太田博樹、内藤健、神澤秀明、菅裕著
- Total Pages
  287
- Publisher
  東京書籍
- ISBN
  9784487816613
- Data Source
  KAKENHI-PROJECT-22H04925
[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019
- Author(s)
  中村祐哉、山田拓司(福田真嗣編集)
- Pages
  107-111
- Total Pages
  147
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz2024
- Author(s)
  3.Uehata T, Yamada S, Ori D, Vandenbon A, Giladi A, Jelinski A, Murakawa Y, Watanabe H, Takeuchi K, Toratani K, Mino T, Kiryu H, Standley DM, Tsujimura T, IkawaT, Kondoh G, Landthaler M, Kawamoto H, Rodewald HR, Amit I, Yamamoto R, Miyazaki M, Takeuchi O
- Journal Title
  
  Blood
  
  Volume: 143 Issue: 3 Pages: 243-257
- DOI
  10.1182/blood.2023020903
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KF0209, KAKENHI-PROJECT-23K11299, KAKENHI-PROJECT-20K12059, KAKENHI-PROJECT-22K19430, KAKENHI-PROJECT-22KF0226, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00402, KAKENHI-PROJECT-23K27425
[Journal Article] Leveraging explainable AI for gut microbiome-based colorectal cancer classification2023
- Author(s)
  Rynazal Ryza、Fujisawa Kota、Shiroma Hirotsugu、Salim Felix、Mizutani Sayaka、Shiba Satoshi、Yachida Shinichi、Yamada Takuji
- Journal Title
  
  Genome Biology
  
  Volume: 24 Issue: 1
- DOI
  10.1186/s13059-023-02858-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19J40249, KAKENHI-PROJECT-22K16336
[Journal Article] Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs2023
- Author(s)
  Ban Hiroki、Sato Shinya、Yoshikawa Shinya、Yamada Kazumasa、Nakamura Yoji、Ichinomiya Mutsuo、Sato Naoki、Blanc-Mathieu Romain、Endo Hisashi、Kuwata Akira、Ogata Hiroyuki
- Journal Title
  
  Communications Biology
  
  Volume: 6 Issue: 1 Pages: 697-697
- DOI
  10.1038/s42003-023-05002-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05309, KAKENHI-PROJECT-22H04925
[Journal Article] The cytosolic lncRNA dutA affects STATa signaling and developmental commitment in Dictyostelium2023
- Author(s)
 Saga Yukika、Shimoyama Yudai、Yamada Yoko、Morikawa Naoki、Kawata Takefumi
- Journal Title
 
 Genes to Cells
 
 Volume: 28 Issue: 2 Pages: 111-128
- DOI
 10.1111/gtc.12997
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-20K06672, KAKENHI-PROJECT-22H04925
[Journal Article] Association Between Diet and Fusobacterium nucleatum in the Feces of Healthy Adults: A Hospital-based Cross-sectional Study2022
- Author(s)
 Narii Nobuhiro、Zha Ling、Sobue Tomotaka、Kitamura Tetsuhisa、Shiba Satoshi、Mizutani Sayaka、Yamada Takuji、Yachida Shinichi
- Journal Title
 
 Cancer Prevention Research
 
 Volume: 16 Issue: 2 Pages: 119-126
- DOI
 10.1158/1940-6207.capr-22-0399
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-22K16336, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19J40249
[Journal Article] XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 from broken DNA.2022
- Author(s)
  Hirota Kouji、Ooka Masato、Shimizu Naoto、Yamada Kousei、Tsuda Masataka、Ibrahim Mahmoud Abdelghany、Yamada Shintaro、Sasanuma Hiroyuki、Masutani Mitsuko、Takeda Shunichi
- Journal Title
  
  Genes to Cells
  
  Volume: in press Issue: 5 Pages: 331-344
- DOI
  10.1111/gtc.12929
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04267, KAKENHI-PROJECT-20H04337, KAKENHI-PROJECT-21K19235, KAKENHI-PROJECT-19KK0210, KAKENHI-PROJECT-16H06279
[Journal Article] Surgical Treatment for Colorectal Cancer Partially Restores Gut Microbiome and Metabolome Traits.2022
- Author(s)
  Shiroma H, Shiba S, Erawijantari PP, Takamaru H, Yamada M, Sakamoto T, Kanemitsu Y, Mizutani S, Soga T, Saito Y, Shibata T, Fukuda S, Yachida S, Yamada T.
- Journal Title
  
  mSystems
  
  Volume: 7 Issue: 2
- DOI
  10.1128/msystems.00018-22
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15800, KAKENHI-PROJECT-19J40249, KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-22K16336
[Journal Article] Mediation effect of intestinal microbiota on the relationship between fiber intake and colorectal cancer2022
- Author(s)
  Shimomura Yoshimitsu、Zha Ling、Komukai Sho、Narii Nobuhiro、Sobue Tomotaka、Kitamura Tetsuhisa、Shiba Satoshi、Mizutani Sayaka、Yamada Takuji、Sawada Norie、Yachida Shinichi
- Journal Title
  
  International Journal of Cancer
  
  Volume: 152 Issue: 9 Pages: 1752-1762
- DOI
  10.1002/ijc.34398
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-22K16336, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19J40249
[Journal Article] Prediction of RNA-protein interactions using a nucleotide language model2022
- Author(s)
  Yamada Keisuke、Hamada Michiaki
- Journal Title
  
  Bioinformatics Advances
  
  Volume: 2 Issue: 1
- DOI
  10.1093/bioadv/vbac023
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00624
[Journal Article] Establishment of a reference single-cell RNA sequencing dataset for human pancreatic adenocarcinoma2022
- Author(s)
  Chijimatsu R、Kobayashi S、Takeda Y、Kitakaze M、Tatekawa S、Tachibana N、Saito T、Ennishi D、Tomida S、Sasaki K、Yamada D、Tomimaru Y、Takahashi H、Doki Y、Eguchi H
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 8 Pages: 104659-104659
- DOI
  10.1016/j.isci.2022.104659
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08773, KAKENHI-PROJECT-21K19526, KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00541, KAKENHI-PROJECT-20K16824, KAKENHI-PROJECT-20K18053
[Journal Article] Hitherto-Unnoticed Self-Transmissible Plasmids Widely Distributed among Different Environments in Japan2022
- Author(s)
  Hayakawa Masaya、Tokuda Maho、Kaneko Kensei、Nakamichi Koichiro、Yamamoto Yukie、Kamijo Tatsuya、Umeki Honoka、Chiba Reimi、Yamada Ryo、Mori Mitsuya、Yanagiya Kosuke、Moriuchi Ryota、Yuki Masahiro、Dohra Hideo、Futamata Hiroyuki、Ohkuma Moriya、Kimbara Kazuhide、Shintani Masaki
- Journal Title
  
  Applied and Environmental Microbiology
  
  Volume: 88 Issue: 18
- DOI
  10.1128/aem.01114-22
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20KK0128, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22KJ1504, KAKENHI-PLANNED-19H05686, KAKENHI-PLANNED-19H05689
[Journal Article] Cell cycle arrest determines adult neural stem cell ontogeny by an embryonic Notch-nonoscillatory Hey1 module2021
- Author(s)
  Harada Yujin、Yamada Mayumi、Imayoshi Itaru、Kageyama Ryoichiro、Suzuki Yutaka、Kuniya Takaaki、Furutachi Shohei、Kawaguchi Daichi、Gotoh Yukiko
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 6562-6562
- DOI
  10.1038/s41467-021-26605-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06481, KAKENHI-PROJECT-20K06667, KAKENHI-PROJECT-21K15180, KAKENHI-PROJECT-16H06279
[Journal Article] The putative RNA-binding protein Dri1 promotes the loading of kinesin-14/Klp2 to the mitotic spindle and is sequestered into heat-induced protein aggregates in fission yeast2021
- Author(s)
  Masashi Yukawa, Mitsuki Ohishi, Yusuke Yamada and Takashi Toda
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 9 Pages: 4795-4795
- DOI
  10.3390/ijms22094795
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K05813, KAKENHI-PROJECT-16H06279
[Journal Article] Representation learning applications in biological sequence analysis2021
- Author(s)
  Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, Shion Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 19 Pages: 3198-3208
- DOI
  10.1016/j.csbj.2021.05.039
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21J15897, KAKENHI-PROJECT-21K15078, KAKENHI-PROJECT-16H06279
[Journal Article] Metagenomic analysis of gut microbiota reveals its role in trimethylamine metabolism in heart failure2021
- Author(s)
  Emoto Takuo、Hayashi Tomohiro、Tabata Tokiko、Yamashita Tomoya、Watanabe Hikaru、Takahashi Tomoya、Gotoh Yasuhiro、Kami Kenjiro、Yoshida Naofumi、Saito Yoshihiro、Tanaka Hidekazu、Matsumoto Kensuke、Hayashi Tetsuya、Yamada Takuji、Hirata Ken-ichi
- Journal Title
  
  International Journal of Cardiology
  
  Volume: 338 Pages: 138-142
- DOI
  10.1016/j.ijcard.2021.06.003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H03653, KAKENHI-PROJECT-16H06279
[Journal Article] Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis2021
- Author(s)
  Yasuyuki Yamada, Hideki Hirakawa, Kentaro Hori, Yohei Minakuchi, Atsushi Toyoda, Nobukazu Shitan, Fumihiko Sato
- Journal Title
  
  Bioscience, Biotechnology, and Biochemistry
  
  Volume: 85 Issue: 4 Pages: 851-859
- DOI
  10.1093/bbb/zbaa091
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Hepatic resistance to cold ferroptosis in a mammalian hibernator Syrian hamster depends on effective storage of diet-derived α-tocopherol2021
- Author(s)
  Anegawa Daisuke、Sugiura Yuki、Matsuoka Yuta、Sone Masamitsu、Shichiri Mototada、Otsuka Reo、Ishida Noriko、Yamada Ken-ichi、Suematsu Makoto、Miura Masayuki、Yamaguchi Yoshifumi
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 796-796
- DOI
  10.1038/s42003-021-02297-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05766, KAKENHI-PROJECT-21H04774, KAKENHI-PROJECT-19H04046, KAKENHI-PROJECT-21K19206, KAKENHI-PROJECT-21K15240, KAKENHI-PROJECT-16H06279
[Journal Article] Uncovering the Role of Gut Microbiota in Amino Acid Metabolic Disturbances in Heart Failure Through Metagenomic Analysis2021
- Author(s)
  Hayashi Tomohiro、Yamashita Tomoya、Takahashi Tomoya、Tabata Tokiko、Watanabe Hikaru、Gotoh Yasuhiro、Shinohara Masakazu、Kami Kenjiro、Tanaka Hidekazu、Matsumoto Kensuke、Hayashi Tetsuya、Yamada Takuji、Hirata Ken-ichi
- Journal Title
  
  Frontiers in Cardiovascular Medicine
  
  Volume: 8 Pages: 789325-789325
- DOI
  10.3389/fcvm.2021.789325
- NAID
  120007181728
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03653, KAKENHI-PROJECT-16H06279
[Journal Article] Immuno-Surgical Management of Pancreatic Cancer with Analysis of Cancer Exosomes2020
- Author(s)
  Takeda Yu、Kobayashi Shogo、Kitakaze Masatoshi、Yamada Daisaku、Akita Hirofumi、Asai Ayumu、Konno Masamitsu、Arai Takahiro、Kitagawa Toru、Ofusa Ken、Yabumoto Masami、Hirotsu Takaaki、Vecchione Andrea、Taniguchi Masateru、Doki Yuichiro、Eguchi Hidetoshi、Ishii Hideshi
- Journal Title
  
  Cells
  
  Volume: 9 Issue: 7 Pages: 1645-1645
- DOI
  10.3390/cells9071645
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07688, KAKENHI-PROJECT-20K16414, KAKENHI-PROJECT-18KK0251, KAKENHI-PROJECT-19H00852, KAKENHI-PROJECT-18K08704, KAKENHI-PROJECT-19K22658, KAKENHI-PROJECT-16H06279
[Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates2020
- Author(s)
  Kawata Kentaro、Wakida Hiroyasu、Yamada Toshimichi、Taniue Kenzui、Han Han、Seki Masahide、Suzuki Yutaka、Akimitsu Nobuyoshi
- Journal Title
  
  Genome Research
  
  Volume: 30 Issue: 10 Pages: 1481-1491
- DOI
  10.1101/gr.264408.120
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-16H06279
[Journal Article] A possible beneficial effect of Bacteroides on faecal lipopolysaccharide activity and cardiovascular diseases2020
- Author(s)
  Yoshida Naofumi、Yamashita Tomoya、Kishino Shigenobu、Watanabe Hikaru、Sasaki Kengo、Sasaki Daisuke、Tabata Tokiko、Sugiyama Yuta、Kitamura Nahoko、Saito Yoshihiro、Emoto Takuo、Hayashi Tomohiro、Takahashi Tomoya、Shinohara Masakazu、Osawa Ro、Kondo Akihiko、Yamada Takuji、Ogawa Jun、Hirata Ken-ichi
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 13009-13009
- DOI
  10.1038/s41598-020-69983-z
- NAID
  120006879534
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21603, KAKENHI-PROJECT-19H03653, KAKENHI-PROJECT-20H03676, KAKENHI-PROJECT-18K05487, KAKENHI-PROJECT-19K23944, KAKENHI-PROJECT-16H06279
[Journal Article] Transient IGF-1R inhibition combined with osimertinib eradicates AXL-low expressing EGFR mutated lung cancer2020
- Author(s)
  Wang Rong、Yamada Tadaaki、Kita Kenji、Taniguchi Hirokazu、Arai Sachiko、Fukuda Koji、Terashima Minoru、Ishimura Akihiko、Nishiyama Akihiro、Tanimoto Azusa、Takeuchi Shinji、Ohtsubo Koshiro、Wang Wei、Suzuki Takeshi、Yano Seiji et. al.
- Journal Title
  
  Nature Communications
  
  Volume: 11 Issue: 1 Pages: 4607-4607
- DOI
  10.1038/s41467-020-18442-4
- NAID
  120007186801
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07346, KAKENHI-PROJECT-19K07686, KAKENHI-PROJECT-19K22578, KAKENHI-PROJECT-20K22837, KAKENHI-PROJECT-19H03433, KAKENHI-PROJECT-19H03499, KAKENHI-PROJECT-19H03665, KAKENHI-PROJECT-18K06057, KAKENHI-PROJECT-18K08141, KAKENHI-PROJECT-16H06279
[Journal Article] Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis2020
- Author(s)
  Toshimichi Yamada, Naoto Imamachi, Katsutoshi Imamura, Kenzui Taniue, Takeshi Kawamura, Yutaka Suzuki, Masami Nagahama, Nobuyoshi Akimitsu
- Journal Title
  
  Cell Reports
  
  Volume: - Issue: 5 Pages: 107542-107542
- DOI
  10.1016/j.celrep.2020.107542
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KT0016, KAKENHI-PROJECT-17KK0163, KAKENHI-PROJECT-18K06640, KAKENHI-PROJECT-16H06279
[Journal Article] Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation2019
- Author(s)
  Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Nicola Segata, et al.
- Journal Title
  
  Nature Madicine
  
  Volume: 25 Issue: 12 Pages: 667-678
- DOI
  10.1038/s41591-019-0663-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer2019
- Author(s)
  Yachida Shinichi、Mizutani Sayaka、Shiroma Hirotsugu、Shiba Satoshi、Nakajima Takeshi、Sakamoto Taku、Saito Yutaka、Fukuda Shinji、Shibata Tatsuhiro、Yamada Takuji
- Journal Title
  
  Nature Medicine
  
  Volume: 25 Issue: 6 Pages: 968-976
- DOI
  10.1038/s41591-019-0458-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-18K15800, KAKENHI-PUBLICLY-18H04805, KAKENHI-PROJECT-16H06373, KAKENHI-PROJECT-19J40249, KAKENHI-PROJECT-16H06279
[Journal Article] FuncTree2 : an interaotive radial tree for functional hierarchies and omics data visualization2019
- Author(s)
  Y Darzi, Y Yamate, T Yamada
- Journal Title
  
  Bioinformatics
  
  Volume: 35 Issue: 21 Pages: 4519-4521
- DOI
  10.1093/bioinformatics/btz245
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Contributions of regulated transcription and mRNA decay to the dynamics of gene expression2019
- Author(s)
  Yamada T., Akimitsu N.
- Journal Title
  
  WIREs RNA
  
  Volume: 10 Issue: 1
- DOI
  10.1002/wrna.1508
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17J11266, KAKENHI-PROJECT-16H06279
[Journal Article] VITCOMIC2: Visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.2018
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K
- Journal Title
  
  BMC Syst. Biol.
  
  Volume: 12 Issue: S2 Pages: 30-30
- DOI
  10.1186/s12918-018-0545-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-17H01854, KAKENHI-PROJECT-15K07214, KAKENHI-PROJECT-16H06279
[Journal Article] Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs2018
- Author(s)
  Imamura Katsutoshi、Takaya Akiko、Ishida Yo‐ichi、Fukuoka Yayoi、Taya Toshiki、Nakaki Ryo、Kakeda Miho、Imamachi Naoto、Sato Aiko、Yamada Toshimichi、Onoguchi‐Mizutani Rena、Akizuki Gen、Tanu Tanzina、Tao Kazuyuki、Miyao Sotaro、Suzuki Yutaka、Nagahama Masami、Yamamoto Tomoko、Jensen Torben Heick、Akimitsu Nobuyoshi
- Journal Title
  
  The EMBO Journal
  
  Volume: 37 Issue: 13
- DOI
  10.15252/embj.201797723
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06640, KAKENHI-PROJECT-18K07102, KAKENHI-PROJECT-18K14899, KAKENHI-PROJECT-17J11266, KAKENHI-PROJECT-16H06279
[Journal Article] Bacteroides vulgatus and Bacteroides dorei reduce gut microbial lipopolysachharide production and inhibit atherosclerosis.2018
- Author(s)
  Yoshida N, Emoto T, Yamashita T, Watanabe H, Hayashi T, Tabata T, Hoshi N, Hatano N, Sasaki N, Mizoguchi T, Amin HZ, Hirota Y, Ogawa W, Yamada T, Hirata K.
- Journal Title
  
  Circulation.
  
  Volume: 138 Issue: 22 Pages: 2486-2498
- DOI
  10.1161/circulationaha.118.033714
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K09497, KAKENHI-PROJECT-16K09516, KAKENHI-PROJECT-16H06279
[Journal Article] Gut Microbiome and Plasma Microbiome-Related Metabolites in Patients With Decompensated and Compensated Heart Failure2018
- Author(s)
  Hayashi T, Yamashita T, Watanabe H, Kami K, Yoshida N, Tabata T, Emoto T, Sasaki N, Mizoguchi T, Irino Y, Toh R, Shinohara M, Okada Y, Ogawa W, Yamada T, Hirata K.
- Journal Title
  
  Circ J
  
  Volume: 83 Issue: 1 Pages: 182-192
- DOI
  10.1253/circj.CJ-18-0468
- NAID
  130007550393
- ISSN
  1346-9843, 1347-4820
- Year and Date
  2018-12-25
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K09497, KAKENHI-PROJECT-17K09579, KAKENHI-PROJECT-16H06279
[Journal Article] Poly(ethylene glycol)ーpoly(lysine) block copolymerーubenimex conjugate targets aminopeptidase N and exerts an antitumor effect in hepatocellular carcinoma stem cells2018
- Author(s)
  Toshiyama, R., Konno, M., Eguchi, H., Takemoto, H., Noda, T., Asai, A., Koseki, J., Haraguchi, N., Ueda, Y. Matsushita, K., Asukai, K., Ohashi, T., Iwagami, Y., Yamada, D., Sakai, D., Asaoka, T., Kudo, T., Kawamoto, K., Gotoh, K., Kobayashi, S., Satoh, T., Doki, Y., Nishiyama, N., Mori, M., Ishii, H.
- Journal Title
  
  Oncogene
  
  Volume: 38 Issue: 2 Pages: 244-260
- DOI
  10.1038/s41388-018-0406-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K16355, KAKENHI-PROJECT-18K16356, KAKENHI-PROJECT-18KK0251, KAKENHI-PROJECT-18H04163, KAKENHI-PROJECT-17H04282, KAKENHI-PROJECT-16F16058, KAKENHI-PROJECT-17K19698, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279
[Journal Article] Bolidophyceae, a Sister Picoplanktonic Group of Diatoms ? A Review2018
- Author(s)
  Kuwata Akira、Yamada Kazumasa、Ichinomiya Mutsuo、Yoshikawa Shinya、Tragin Margot、Vaulot Daniel、Lopes dos Santos Adriana
- Journal Title
  
  Frontiers in Marine Science
  
  Volume: 5 Pages: 1-17
- DOI
  10.3389/fmars.2018.00370
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07515, KAKENHI-PROJECT-17J01950, KAKENHI-PROJECT-16K07489, KAKENHI-PROJECT-15K14784, KAKENHI-PROJECT-17H03724, KAKENHI-PROJECT-16H06279
[Journal Article] Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence2018
- Author(s)
  Hori Kentaro、Yamada Yasuyuki、Purwanto Ratmoyo、Minakuchi Yohei、Toyoda Atsushi、Hirakawa Hideki、Sato Fumihiko
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: 59 Issue: 2 Pages: 222-233
- DOI
  10.1093/pcp/pcx210
- NAID
  120006384165
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26221201, KAKENHI-PROJECT-16H06279
[Journal Article] Diminished nuclear RNA decay upon Salmonella infection upregulates antibacterial noncoding RNAs2018
- Author(s)
  Imamura K, Takaya A, Ishida Y, Fukuoka Y, Taya T, Nakaki R, Kakeda M, Imamachi N, Sato A, Yamada T, Onoguchi-Mizutani R, Akizuki G, Tanu T, Tao K, Miyao S, Suzuki Y, Nagahama M, Yamamoto T, Jensen TH, Akimitsu N.
- Journal Title
  
  EMBO Journal
- Description
  accepted
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing2017
- Author(s)
  Yamaguchi T, Hosomichi K, Yano K, Kim Y, Nakaoka H, Kimura R, Otsuka H, Nonaka N, Haga S, Takahashi M, Shirota T, Kikkawa Y, Yamada A, Kamijo R, Park SB, Nakamura M, Maki K, Inoue I
- Journal Title
  
  Hum Genome Variation
  
  Volume: 印刷中 Issue: 1 Pages: 17005-17005
- DOI
  10.1038/hgv.2017.5
- NAID
  120006891152
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06502, KAKENHI-PROJECT-15H02373, KAKENHI-PROJECT-15H05016, KAKENHI-PROJECT-26430195, KAKENHI-PROJECT-15K20367, KAKENHI-PROJECT-15K11051, KAKENHI-PROJECT-16K15782, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19804, KAKENHI-PROJECT-17K17089, KAKENHI-PROJECT-25251043, KAKENHI-PROJECT-16K15843
[Journal Article] Comprehensive microbiome analysis of tonsillar crypts in IgA nephropathy2017
- Author(s)
  Watanabe H, Goto S, Mori H, Higashi K, Hosomichi K, Aizawa N, Takahashi N, Tsuchida M, Suzuki Y, Yamada T, Horii A, Inoue I, Kurokawa K, Narita I.
- Journal Title
  
  Nephrol Dial Transplant
  
  Volume: in press Pages: 2072-2079
- DOI
  10.1093/ndt/gfw343
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26293201, KAKENHI-PROJECT-26670429, KAKENHI-PROJECT-15K09250, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-15H02373
[Journal Article] Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.2016
- Author(s)
  Moriya, Y., Yamada, T., Okuda, S., Nakagawa, Z., Kotera, M., Tokimatsu, T., Kanehisa, M. & Goto, S.
- Journal Title
  
  Journal of Chemical Information and Modeling
  
  Volume: 56 Issue: 3 Pages: 510-516
- DOI
  10.1021/acs.jcim.5b00216
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25710016, KAKENHI-PROJECT-26242088
[Journal Article] DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.2015
- Author(s)
  Wang T, Mori H, Zhang C, Kurokawa K, Xing X, Yamada T
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 16 Issue: 1 Pages: 96-96
- DOI
  10.1186/s12859-015-0499-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24770015, KAKENHI-PUBLICLY-25108708, KAKENHI-PROJECT-25710016, KAKENHI-PROJECT-26670717, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106004
[Journal Article] FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data.2015
- Author(s)
  Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
- Journal Title
  
  PLoS One.
  
  Volume: 10 Issue: 5 Pages: e0126967-e0126967
- DOI
  10.1371/journal.pone.0126967
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26670717, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-25710016
[Patent] 早期大腸癌の検出方法2017
- Inventor(s)
  山田拓司, 福田真嗣, 谷内田真一
- Filing Date
  2017
- Overseas
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2024
- Author(s)
  桑田晃、伴広輝、中村洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
- Organizer
  日本藻類学会第48回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] トウガラシのRNA分解活性を制御するRNase MC-like遺伝子の同定2024
- Author(s)
  山崎彬、白澤健太、山田寛子、細川宗孝
- Organizer
  園芸学会令和6年度春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2023
- Author(s)
  桑田晃、伴広輝、中村洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
- Organizer
  日本海洋学会2023年度秋季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Squalomixコンソーシアムによるサメ・エイ類の分子生物学研究：脊椎動物の進化と多様性の成立ちを理解するために2023
- Author(s)
  山口和晃、川口茜、宇野好宣、門田満隆、西村理、松本瑠偉、喜屋武樹、加登岡大希、都築信隆、山内信弥、山田一幸、兵藤晋、佐藤圭一、工樂樹洋
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 光操作技術とNGS 解析を用いた、神経幹細胞の制御メカニズムの解明2022
- Author(s)
  山田真弓
- Organizer
  第18回成体脳ニューロン新生懇談会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] miRNA 改変型核酸医薬品はマウス消化器がんモデルで腫瘍を効果的に抑制する2022
- Author(s)
  佐藤広陸、佐々木一樹、荒尾泰子、中山実香、竹田佑、山田大作、富丸慶人、三吉範克、高橋秀典、小林省吾、森正樹、土岐祐一郎、江口英利、石井秀始
- Organizer
  第81回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 光操作技術を用いた神経幹細胞の制御メカニズムの解析2022
- Author(s)
  山田真弓、長崎真治、Seongchun Yang、今吉格
- Organizer
  NEURO2022　第45回日本神経科学大会第65回日本神経化学会大会第32回日本神経回路学会大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 下気道におけるM細胞の分化機構の解明2022
- Author(s)
  木村俊介, 山田恭央, 中村有孝, 河合真悟, 長谷耕二
- Organizer
  第6回日本骨免疫学会ウィンタースクール
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 膵癌のシングルセル RNA シークエンスデータセットの統合と再構築2022
- Author(s)
  竹田佑、千々松良太、小林省吾、北風雅敏、山田大作、高橋秀典、森正樹、土岐祐一郎、江口英利、石井秀始
- Organizer
  第81回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Uncovering the Role of Gut Microbiota in Amino Acid Metabolic Disturbances in Heart Failure Through Metagenomic Analysis2022
- Author(s)
  林友鴻, 山下智也, 高橋和也, 田畑論子, 渡邊日佳流, 後藤恭宏, 篠原正和, 紙健次郎, 田中秀和, 松本賢亮, 林哲也, 山田拓司, 平田健一
- Organizer
  第86回日本循環器学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] IncP-1群プラスミドの宿主域の違いを生む因子の探索2022
- Author(s)
  德田真穂, 山田亮, 金原和秀, 新谷政己
- Organizer
  日本農芸化学会2022年度大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 気管内挿管チューブに定着し実験進化したAcinetobacter baumanniiの病原性解析2022
- Author(s)
  鴨志田剛, 山口大貴, 山田倫暉, 竹本訓彦, 八尋錦之助
- Organizer
  第95回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物統合データベースMicrobeDB. jpを用いたマイクロバイオーム研究への応用2022
- Author(s)
  森宙史, 藤澤貴智, 西出浩世, 矢口貴志, 高橋弘喜, 中川善一, 山田拓司, 内山郁夫, 中村保一, 黒川顕
- Organizer
  第16回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Analysis of neural stem cell regulatory mechanisms using optogenetics2021
- Author(s)
  Mayumi Yamada
- Organizer
  The Front Lines of Biomedical Research on the Nervous System
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] The genome biology of Parmales (Bolidophyceae), a sister group of diatomsThe genome biology of Parmales (Bolidophyceae), a sister group of diatoms.2021
- Author(s)
  伴広輝, 佐藤晋也, 吉川伸哉, 山田和正, 中村洋路, 一宮睦雄, 遠藤寿, Romain Blanc-Mathieu, 桑田晃, 緒方博之
- Organizer
  Molecular life of diatoms 6
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シリカ被殻を持つ真核藻類 : パルマ藻・珪藻の比較ゲノム解析2021
- Author(s)
  伴広輝、桑田晃、中村洋路、佐藤晋也、吉川伸哉、山田和正、一宮睦雄、緒方博之
- Organizer
  日本藻類学会第45回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 医療機器に高度接着する細菌の樹立とその病原性解析2021
- Author(s)
  山田倫暉, 鴨志田剛, 永嶺沙也佳, 岡田知子, 山口大貴, 藤室雅弘
- Organizer
  第94回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物統合データベース MicrobeDB. jp version 3とマイクロバイオーム解析2021
- Author(s)
  森宙史、藤澤貴智、西出浩世、矢口貴志、高橋弘喜、中川善一、山田拓司、内山郁夫、中村保一、黒川顕
- Organizer
  第15回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Intestinal microbiota in heart failure2020
- Author(s)
  Tomoya Yamashita, Tokiko Tabata, Takuo Emoto, Tomohiro Hayashi, Hikaru Watanabe, Tomoya Takahashi, Naofumi Yoshida, Yoshihiro Saito, Takuji Yamada, Ken-ichi Hirata
- Organizer
  第84回日本循環器学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Dynamic transcriptional regulation of neural stem cells by bHLH factors2020
- Author(s)
  山田真弓
- Organizer
  第63回日本神経化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 新規に分離された珪質型ボリド藻Tetraparma属3種の分子系統解析2020
- Author(s)
  新川裕大、山田和正、吉川伸哉、桑田晃、一宮睦雄、佐藤晋也
- Organizer
  日本藻類学会第44回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] YMPHOID-MYELOID CELL FATE DETERMINATION BY ENDORIBONUCLEASES REGNASE-1 AND -32020
- Author(s)
  Takuya, U., Yamada, S., Miyazaki, M., Giladi, A., Vandenbon, A., Amit, I., Kawamoto, H., Takeuchi, O.
- Organizer
  8th Annual Meeting ; International Cytokine & Interferon Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Patient-specific circulating tumor DNA monitoring using esophageal squamous cell cancer gene panel and digital PCR2019
- Author(s)
  Takeshi Iwaya, Fumitaka Endo, Yasushi Sasaki, Noriyuki Sasaki, Mizunori Yaegashi, Yuji Akiyama, Akira Sasaki, Mari Masuda, Tesshi Yamada, Takashi Tokino, Satoshi Nishizuka
- Organizer
  アメリカ癌学会
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Metagenomic and metabolomic analyses in colorectal cancer2019
- Author(s)
  山田拓司
- Organizer
  Microbiome Movement - Drug Development, Singapore
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Metagenomic and metabolomic analyses reveal dynamic shifts in gut microbiota along the adenoma-carcinoma sequence in colorectal cancer2019
- Author(s)
  山田拓司
- Organizer
  OIST Workshop "A World of Microbiota"
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 染色体構造中における減数分裂期DSB形成機構2019
- Author(s)
  山田貴富、太田邦史、村上浩士
- Organizer
  第52回酵母遺伝学フォーラム研究報告会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 腸内細菌ってなんだ??-ヒト腸内メタゲノム解析が広げる医療2019
- Author(s)
  山田拓司
- Organizer
  東京工業大学社会人アカデミー人間数理情報アカデミー2019
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromatin-mediated control of meiotic recombination in fission yeast2019
- Author(s)
  山田貴富
- Organizer
  遺伝研研究会「有性生殖における染色体・クロマチン・核動態に関する研究会」
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Patient-specific circulating tumor DNA monitoring using esophageal squamous cell cancer gene panel and digital PCR.2019
- Author(s)
  Iwaya T, Endo F, Sasaki Y, Sasaki N, Yaegashi M, Akiyama Y, Sasaki A, Masuda M, Yamada T, Tokino T, Nishizuka S.
- Organizer
  Amerian Association for Cancer Research (AACR)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 神経幹細胞におけるbHLH型転写因子のダイナミックな発現制御機構2019
- Author(s)
  山田真弓
- Organizer
  NEURO2019
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Therapeutic response monitoring using digital PCR for patient-specific circulating tumor DNA identified by an esophageal squamous cell carcinoma-specific sequencing panel.2018
- Author(s)
  Takeshi Iwaya, Fumitaka Endo, Yasushi Sasaki, Yuji Akiyama, Akira Sasaki, Mari Masuda, Tesshi Yamada, Takashi Tokino, Satoshi Nishizuka
- Organizer
  米国臨床腫瘍学会
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Human gut microbiome associated with colorectal cancer2017
- Author(s)
  山田拓司
- Organizer
  第76回日本癌学会学術総会(日本、横浜)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Exploitation of a liquid biopsy system using circulating tumor DNA in esophageal cancer patients2017
- Author(s)
  Takeshi Iwaya, Fumitaka Endo, Yasushi Sasaki, Mizunori Yaegashi, Takehiro Chiba, Yuji Akiyama, Mari Masuda, Tesshi Yamada, Takashi Tokino, Satoshi Nishizuka
- Organizer
  第76回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Biology of a picoeukaryotic phytoplankton, Parmales(Bolidophyceae), a sister group of diatoms2017
- Author(s)
  桑田晃, 一宮睦雄, 吉川伸哉, 山田和正, 河地正伸, Mary-Hélène Noël, 斉藤憲治, 中村洋路, 沢田健, Adriana Lopes dos Santos, Daniel Vaulot
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 大腸がん発病に伴うヒト腸内細菌のマルチオミクス解析2017
- Author(s)
  山田拓司
- Organizer
  第17回日本抗加齢医学会総会(日本、東京)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Morphological and transcriptome analysis in cell wall formation of Triparma laevis2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] パルマ藻Triparma Iaevisの細胞壁形成機構の解析2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 一柳紀凛, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Discovery of a silicified scaly bolidophyte, the novel lineage matching with the hypothetical ancestor of diatoms2017
- Author(s)
  山田和正, 山崎誠司, 佐藤晋也, 吉川伸哉, 桑田晃, 一宮睦雄
- Organizer
  第11回国際藻類学会
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 新規培養株の確立により示されたパルマ藻の系統的多様性2017
- Author(s)
  山田和正, 山﨑誠司, 佐藤晋也, 吉川伸哉, 桑田晃, 一宮睦雄
- Organizer
  2017年日本プランクトン学会・日本ベントス学会合同大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] VITCOMIC2 : Visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing2017
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
- Organizer
  GIW 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヒト腸内細菌データベースとその利用2017
- Author(s)
  山田拓司
- Organizer
  第69回日本生物工学会大会(日本、東京)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヒト腸内細菌と大腸がん発病モデル2017
- Author(s)
  山田拓司
- Organizer
  日本マイクロバイオームコンソーシアム(JMBC)設立記念シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] VITCOMIC2 : visualization of the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing2017
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
- Organizer
  ProkaGenomics 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 大腸がん発病に伴うヒト腸内細菌のマルチオミクス解析2017
- Author(s)
  山田拓司
- Organizer
  第42回日本医用マススペクトル学会(日本、東京)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Fecal metagenomic analysis of colorectal cancer cohort2015
- Author(s)
  Takuji Yamada
- Organizer
  第74回日本癌学会学術総会
- Place of Presentation
  名古屋国際会議場
- Year and Date
  2015-10-08
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] Metabolic pathway database for Human gut microbiome2015
- Author(s)
  山田　拓司
- Organizer
  第67回日本生物工学会大会
- Place of Presentation
  鹿児島
- Year and Date
  2015-10-26
- Data Source
  KAKENHI-PROJECT-26670717
[Presentation] ヒト腸内細菌代謝機能データベースの構築2015
- Author(s)
  山田　拓司
- Organizer
  第15回日本抗加齢医学会総会
- Place of Presentation
  福岡
- Year and Date
  2015-05-29
- Invited
- Data Source
  KAKENHI-PROJECT-26670717
[Presentation] Metabolic pathway database for Human gut microbiome2015
- Author(s)
  Takuji Yamada
- Organizer
  第67回日本生物工学会大会
- Place of Presentation
  城山観光ホテル（鹿児島）
- Year and Date
  2015-10-26
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] ヒト腸内細菌代謝経路データベースの構築2015
- Author(s)
  山田　拓司
- Organizer
  第366回CBI学会講演会
- Place of Presentation
  大阪
- Year and Date
  2015-11-05
- Invited
- Data Source
  KAKENHI-PROJECT-26670717
[Presentation] ヒト腸内細菌代謝機能データベースの構築2015
- Author(s)
  Takuji Yamada
- Organizer
  第15回日本抗加齢医学会総会
- Place of Presentation
  福岡国際会議場
- Year and Date
  2015-05-29
- Invited
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] Metabolic pathway database for Human gut microbiome2015
- Author(s)
  Takuji Yamada
- Organizer
  International Symposium for Frontier of Bioinformatics
- Place of Presentation
  Tokyo
- Year and Date
  2015-10-16
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26670717
[Presentation] Fecal metagenomic analysis of colorectal cancer cohort2015
- Author(s)
  山田　拓司
- Organizer
  第74回日本癌学会学術総会
- Place of Presentation
  名古屋
- Year and Date
  2015-10-08
- Invited
- Data Source
  KAKENHI-PROJECT-26670717
[Presentation] Metabolic pathway database for human microbiome2014
- Author(s)
  山田拓司
- Organizer
  第５回アジアトピックカンファレンス
- Place of Presentation
  神戸ポートピアホテル　神戸
- Year and Date
  2014-10-21
- Invited
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] ヒト腸内細菌叢代謝データベースの構築2014
- Author(s)
  山田拓司
- Organizer
  第17回日本臨床腸内微生物学会
- Place of Presentation
  東京慈恵会医科大学　東京
- Year and Date
  2014-10-04
- Invited
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] Metabolic pathway database for human microbiome2014
- Author(s)
  山田拓司
- Organizer
  1st international Symposium on Mucosal Immunity and Vaccine Development 2014
- Place of Presentation
  The University of Tokyo　東京
- Year and Date
  2014-10-21
- Invited
- Data Source
  KAKENHI-PROJECT-25710016
[Presentation] 腸内細菌代謝反応データベースの構築2014
- Author(s)
  山田拓司
- Organizer
  第46回日本動脈硬化学会総会・学術集会
- Place of Presentation
  京王プラザホテル　東京
- Year and Date
  2014-07-10
- Invited
- Data Source
  KAKENHI-PROJECT-25710016

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Yamada Takuji 山田 拓司

山田 拓司

Research Projects

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Co-Researchers

Platform for Advanced Genome Science

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Diagnostic strategy for prostate cancer based on multifaceted analyses of genetic background, life style and gut microbiome

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Platform for Advanced Genome Science

Principal Investigator

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Changes of intestinal microbiome of preterm labor cases and endometriosis cases by metagenome analysis.

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真菌類ゲノムからの新規酵素遺伝子発見Principal Investigator

Principal Investigator

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Review Section

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Understanding metabolic systems for human gut microbiomePrincipal Investigator

Principal Investigator

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[Book] ゲノムでたどる古代の日本列島2023

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[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊 もっとよくわかる! シリーズ)2019

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[Journal Article] Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz2024

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[Journal Article] Leveraging explainable AI for gut microbiome-based colorectal cancer classification2023

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[Journal Article] Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs2023

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[Journal Article] The cytosolic lncRNA <i>dutA</i> affects STATa signaling and developmental commitment in <i>Dictyostelium</i>2023

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[Journal Article] Association Between Diet and <i>Fusobacterium nucleatum</i> in the Feces of Healthy Adults: A Hospital-based Cross-sectional Study2022

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[Journal Article] XRCC1 counteracts poly(ADP ribose)polymerase (PARP) poisons, olaparib and talazoparib, and a clinical alkylating agent, temozolomide, by promoting the removal of trapped PARP1 from broken DNA.2022

Author(s)

Journal Title

DOI

Yamada Takuji 山田拓司

山田拓司

[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019