Frith Martin ＦｒｉｔｈＭａｒｔｉｎ

… Alternative Names

FRITH Martin フリスマーティン

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Researcher Number	40462832
Other IDs
Affiliation (Current)	2025: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員 2025: 東京大学, 大学院新領域創成科学研究科, 教授
Affiliation (based on the past Project Information) *help	2024: 東京大学, 大学院新領域創成科学研究科, 教授 2021: 産業技術総合研究所, 情報・人間工学領域, 上級主任研究員 2019 – 2021: 東京大学, 大学院新領域創成科学研究科, 教授 2017: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 上級主任研究員 2016: 国立研究開発法人産業技術総合研究所, 人工知能研究センター, 上級主任研究員 … More 2015: 国立研究開発法人産業技術総合研究所, 創薬基盤研究部門, 主任研究員 2015: 産業技術総合研究所, 人工知能研究センター, 主任研究員 2014: 国立研究開発法人産業技術総合研究所, ゲノム情報研究センター, 主任研究員 2012 – 2013: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 主任研究員 2011: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究員 Less
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics Except Principal Investigator Basic Section 52020:Neurology-related / Life / Health / Medical informatics / Bioinformatics/Life informatics
Keywords	Principal Investigator 比較ゲノム / 生体情報学 / バイオインフォマティクス / deletion / insertion / substitution / probability / alignment / orthology / genome … More Except Principal Investigator … More メタゲノム / エピゲノム / ゲノム / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / シングルセル解析 / オミックス解析 / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / リシーケンシング / 新規ゲノム配列決定 / 次世代DNAシーケンサー / ゲノム構造異常 / リピート病 / 単純反復配列 / ロングリードシークエンサー / 遺伝性神経疾患 / ナノポアシークエンサー / 配列検索 / データベース検索 / 暗号 / 化合物 / プライバシー / 準同型暗号 / 配列アラインメント / PPDM / 隠れマルコフモデル / アラインメント / 化合物検索 / プライバシー保護 / タンパク質局在 / mRNA配列解析 / ミトコンドリア / mRNA局在 Less

Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
Analysis of neurological genetic diseases using nanopore long read sequencer
- Principal Investigator
  
  Mitsuhashi Satomi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 52020:Neurology-related
- Research Institution
  Tokyo Medical and Dental University
  Yokohama City University
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Regulatory DNA conserved between PhylaPrincipal Investigator
- Principal Investigator
  
  Frith Martin
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Development of basic technology for privacy-preserving bioinformatics and its application
- Principal Investigator
  
  Hamada Michiaki
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Waseda University
  The University of Tokyo
Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA
- Principal Investigator
  
  HORTON Paul
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology

All 2021 2020 2019 2018 2017 2016 2015

All Journal Article Presentation

[Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells2021
- Author(s)
  Mitsuhashi Satomi、Nakagawa So、Sasaki-Honda Mitsuru、Sakurai Hidetoshi、Frith Martin C、Mitsuhashi Hiroaki
- Journal Title
  
  Human Molecular Genetics
  
  Volume: in press Issue: 7 Pages: 552-563
- DOI
  10.1093/hmg/ddab063
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-19K16611, KAKENHI-INTERNATIONAL-16K21723, KAKENHI-PROJECT-18K07511, KAKENHI-PROJECT-16H06279, KAKENHI-ORGANIZER-16H06429, KAKENHI-PROJECT-20K06775
[Journal Article] Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population2021
- Author(s)
  Mitsuhashi Satomi、Frith Martin C.、Matsumoto Naomichi
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 14 Issue: 1 Pages: 17-17
- DOI
  10.1186/s12920-020-00853-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-16H06279
[Journal Article] Long-read Sequencing Identifies the Pathogenic Nucleotide Repeat Expansion in RFC1 in a Japanese Case of CANVAS2020
- Author(s)
  Haruko Nakamura, Hiroshi Doi, Satomi Mitsuhashi, Satoko Miyatake, Kazutaka Katoh, Martin C Frith, Tetsuya Asano, Yosuke Kudo, Takuya Ikeda, Shun Kubota, Misako Kunii, Yu Kitazawa, Mikiko Tada, Mitsuo Okamoto, Hideto Joki, Hideyuki Takeuchi, Naomichi Matsumoto, Fumiaki Tanaka
- Journal Title
  
  Journal of Human Genetics
  
  Volume: 65 Issue: 5 Pages: 475-480
- DOI
  10.1038/s10038-020-0733-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-19K17014, KAKENHI-PROJECT-17K10080, KAKENHI-PROJECT-20K06767, KAKENHI-PROJECT-20K07907, KAKENHI-PROJECT-18K07503
[Journal Article] A pipeline for complete characterization of complex germline rearrangements from long DNA reads2020
- Author(s)
  Mitsuhashi Satomi、Ohori Sachiko、Katoh Kazutaka、Frith Martin C.、Matsumoto Naomichi
- Journal Title
  
  Genome Medicine
  
  Volume: 12 Issue: 1 Pages: 67-67
- DOI
  10.1186/s13073-020-00762-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-20K06767, KAKENHI-PROJECT-16H06279
[Journal Article] Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer?Giedion syndrome and Cornelia de Lange syndrome-42020
- Author(s)
  Lei Ming、Liang Desheng、Yang Yifeng、Mitsuhashi Satomi、Katoh Kazutaka、Miyake Noriko、Frith Martin C.、Wu Lingqian、Matsumoto Naomichi
- Journal Title
  
  Journal of Human Genetics
  
  Volume: - Issue: 8 Pages: 667-674
- DOI
  10.1038/s10038-020-0754-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07464, KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-19H03621, KAKENHI-PROJECT-20K06767
[Journal Article] lamassemble: Multiple Alignment and Consensus Sequence of Long Reads2020
- Author(s)
  Frith Martin C.、Mitsuhashi Satomi、Katoh Kazutaka
- Journal Title
  
  Methods Mol Biol.
  
  Volume: 2231 Pages: 135-145
- DOI
  10.1007/978-1-0716-1036-7_9
- ISBN
  9781071610350, 9781071610367
- Data Source
  KAKENHI-PROJECT-19K07977, KAKENHI-PROJECT-20K06767, KAKENHI-PROJECT-16K07464
[Journal Article] Evaluation and application of RNA-Seq by MinION.2019
- Author(s)
  Seki M, Katsumata E, Suzuki A, Sereewattanawoot S, Sakamoto Y, Mizushima-Sugano J, Sugano S, Kohno T, Frith MC, Tsuchihara K, Suzuki Y.
- Journal Title
  
  DNA research
  
  Volume: 26 Issue: 1 Pages: 55-65
- DOI
  10.1093/dnares/dsy038
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H04298
[Journal Article] A Simplified Description of Child Tables for Sequence Similarity Search2018
- Author(s)
  Frith Martin、Shrestha Anish
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: - Issue: 6 Pages: 1-1
- DOI
  10.1109/tcbb.2018.2796064
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030
[Journal Article] Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads2017
- Author(s)
  Poulsen Thomas M.、Frith Martin
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 18 Issue: 1 Pages: 299-299
- DOI
  10.1186/s12859-017-1710-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030
[Journal Article] EAGLE: Explicit Alternative Genome Likelihood Evaluator.2017
- Author(s)
  Tony Kuo, Martin Frith, Jun Sese, Paul Horton
- Journal Title
  
  BMC Medical Genomics
  
  Volume: 11 Issue: Suppl 2 Pages: 28-28
- DOI
  10.1186/s12920-018-0342-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H05713, KAKENHI-PROJECT-26700030, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-16H06469
[Journal Article] Serotyping dengue virus with isothermal amplification and a portable sequencer2017
- Author(s)
  Yamagishi Junya、Runtuwene Lucky R.、Hayashida Kyoko、Mongan Arthur E.、Thi Lan Anh Nguyen、Thuy Linh Nguyen、Nhat Cam Nguyen、Limkittikul Kriengsak、Sirivichayakul Chukiat、Sathirapongsasuti Nuankanya、Frith Martin、Makalowski Wojciech、Eshita Yuki、Sugano Sumio、Suzuki Yutaka
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 3510-3510
- DOI
  10.1038/s41598-017-03734-5
- NAID
  120006337766
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K14417, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-15H05272
[Journal Article] Training alignment parameters for arbitrary sequencers with LAST-TRAIN2017
- Author(s)
  Hamada M, Ono Y, Asai K, Frith MC
- Journal Title
  
  Bioinformatics
  
  Volume: 33 Issue: 6 Pages: 926-928
- DOI
  10.1093/bioinformatics/btw742
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16H02484
[Journal Article] A survey of localized sequence rearrangements in human DNA2017
- Author(s)
  Frith Martin C、Khan Sofia
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 46 Issue: 4 Pages: 1661-1673
- DOI
  10.1093/nar/gkx1266
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030
[Journal Article] Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer2017
- Author(s)
  Suzuki Ayako、Suzuki Mizuto、Mizushima-Sugano Junko、Frith Martin C、Maka?owski Wojciech、Kohno Takashi、Sugano Sumio、Tsuchihara Katsuya、Suzuki Yutaka
- Journal Title
  
  DNA Research
  
  Volume: 24 Issue: 6 Pages: 585-596
- DOI
  10.1093/dnares/dsx027
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H01582, KAKENHI-PROJECT-16H06279
[Journal Article] ALP & FALP: C++ libraries for pairwise local alignment E-values2016
- Author(s)
  Sheetlin S, Park Y, Frith MC, Spouge JL
- Journal Title
  
  Bioinformatics
  
  Volume: 32 Pages: 304-5
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030
[Journal Article] Split-alignment of genomes finds orthologies more accurately2015
- Author(s)
  MC Frith, R Kawaguchi
- Journal Title
  
  Genome Biology
  
  Volume: 16 Issue: 1 Pages: 106-106
- DOI
  10.1186/s13059-015-0670-9
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] ナノポアダイレクトRNAシークエンスによる骨格筋でのDUX4誘導転写産物の解析2021
- Author(s)
  三橋里美, 中川草, 本田充, 櫻井秀俊, マーチン・フリス, 三橋弘明
- Organizer
  第44回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-19K07977
[Presentation] 先進的RNA-seqのデータ解析を改善するマッピングパラメータ学習2018
- Author(s)
  岩切淳一, Martin C. Frith, 浜田道昭, 浅井潔
- Organizer
  第20回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Aligning sequences with arbitrary rearrangements and duplications2017
- Author(s)
  Martin Frith, Risa Kawaguchi, Michiaki Hamada
- Organizer
  Advanced Genome Science International Symposium
- Place of Presentation
  University of Tokyo, Tokyo
- Year and Date
  2017-01-10
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] LAST: statistically rigorous, large-scale sequence comparison2016
- Author(s)
  Martin Frith
- Organizer
  WABI 2016
- Place of Presentation
  Aarhus University, Aarhus, Denmark
- Year and Date
  2016-08-22
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] Training alignment parameters for PacBio, Ion Torrent and Nanopore sequencers with last-train2016
- Author(s)
  Michiaki Hamada, Yukiteru Ono, Kiyoshi Asai, Martin Frith
- Organizer
  WABI 2016
- Place of Presentation
  Aarhus University, Aarhus, Denmark
- Year and Date
  2016-08-22
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] Explaining the correlations among properties of mammal promoters2015
- Author(s)
  MC Frith
- Organizer
  ISCB Africa
- Place of Presentation
  Dar es Salaam
- Year and Date
  2015-03-11
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] Split-alignment of genomes finds orthologies more accurately2015
- Author(s)
  MC Frith, R Kawaguchi
- Organizer
  GIW/InCoB
- Place of Presentation
  MIRAIKAN(Odaiba, Tokyo)
- Year and Date
  2015-09-09
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] Nanopore Sequencing for Genotyping Pathogens of Tropical Diseases2015
- Author(s)
  T Kischka, MC Frith, N Grundman, J Jamagishi, Y Suzuki, W Makalowski
- Organizer
  ISCB Africa
- Place of Presentation
  Dar es Salaam
- Year and Date
  2015-03-10
- Data Source
  KAKENHI-PROJECT-26700030
[Presentation] A survey of genome rearrangements in human evolution2015
- Author(s)
  MC Frith
- Organizer
  29th International Mammalian Genome Conference (IMGC)
- Place of Presentation
  Yokohama Port Memorial Hall(Yokohama, Kanagawa)
- Year and Date
  2015-11-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26700030

1. Hamada Michiaki (00596538)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
2. Asai Kiyoshi (30356357)

# of Collaborated Projects: 3 results

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3. Kawashima Minae (00396706)

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4. TOYODA Atsushi (10267495)

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5. Suzuki Yutaka (40323646)

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6. Hayashi Tetsuya (10173014)

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7. Kurokawa Ken (20343246)

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8. Nakamura Yasukazu (60370920)

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9. Noguchi Hideki (50333349)

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10. IWASAKI WATARU (50545019)

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11. Morishita Shinichi (90292854)

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12. Kasahara Masahiro (60376605)

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13. Ito Takehiko (90501106)

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14. Yamada Takuji (10437262)

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19. HIRAKAWA Hideki (80372746)

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20. HORTON Paul (00371071)

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26. Tsuda Koji (90357517)

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27. Mitsuhashi Satomi (40466222)

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28. KOHARA Yuji (70135292)

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29. Kato Kazuto (10202011)

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30. MITSUI Jun (70579862)

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31. TOKINO Takashi (40202197)

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32. KUHARA Satoshi (00153320)

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33. Sakakibara Yasubumi (10287427)

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34. Takagi Toshihisa (30110836)

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35. Ida Ryuichi (40127543)

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36. YAMAGATA Zentaro (10210337)

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37. Masui Toru (50150082)

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38. Muto Kaori (50345766)

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39. Kodama Satoshi (80372366)

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40. Setoyama Koichi (00379075)

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41. Kokado Minori (20706650)

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42. Ohashi Noriko (50739430)

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43. FUJIYAMA Asao (60142311)

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44. INOUE Ituro (00192500)

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45. Nakaoka Hirofumi (70611193)

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46. Sugano Sumio (60162848)

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47. Tsuji Shoji (70150612)

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48. Gotoh Yasuhiro (20558358)

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49. Nakamura Keiji (60706216)

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51. Nakase Hiroshi (60362498)

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52. SASAKI Yasushi (70322328)

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53. IDOGAWA Masashi (00404749)

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54. Tange Shoichiro (40571211)

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55. OGASAWARA Osamu (00435512)

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56. Tanizawa Yasuhiro (90836511)

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57. Kondo Shinji (30415161)

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58. kiryu hisanori (80415778)

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59. Kajitani Rei (40756706)

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60. TASHIRO Kosuke (00192170)

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61. Suzuki Hiromu (20381254)

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62. NOSHO KATSUHIKO (10597339)

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63. KAI Masahiro (80260777)

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64. 西村祐貴 (20783012)

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68. 熊谷雄太郎 (00528408)

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69. KATOH Kazutaka

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70. 山岸潤也

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71. 鈴木絢子

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# of Collaborated Products: 1 results

Frith Martin Ｆｒｉｔｈ Ｍａｒｔｉｎ

FRITH Martin フリス マーティン

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Platform for Advanced Genome Science

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Analysis of neurological genetic diseases using nanopore long read sequencer

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Platform for Advanced Genome Science

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Regulatory DNA conserved between PhylaPrincipal Investigator

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Development of basic technology for privacy-preserving bioinformatics and its application

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Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA

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[Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells2021

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[Journal Article] Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population2021

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[Journal Article] Long-read Sequencing Identifies the Pathogenic Nucleotide Repeat Expansion in RFC1 in a Japanese Case of CANVAS2020

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[Journal Article] A pipeline for complete characterization of complex germline rearrangements from long DNA reads2020

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[Journal Article] Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer?Giedion syndrome and Cornelia de Lange syndrome-42020

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[Journal Article] lamassemble: Multiple Alignment and Consensus Sequence of Long Reads2020

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[Journal Article] Evaluation and application of RNA-Seq by MinION.2019

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[Journal Article] A Simplified Description of Child Tables for Sequence Similarity Search2018

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Frith Martin ＦｒｉｔｈＭａｒｔｉｎ

FRITH Martin フリスマーティン