Oota Motonori 太田元規

… Alternative Names

Motonori Ota 太田元規

OTA Motonori 太田元規

太田元規オオタモトノリ

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Researcher Number	40290895
Other IDs
External Links
Affiliation (Current)	2025: 名古屋大学, 情報学研究科, 教授
Affiliation (based on the past Project Information) *help	2018 – 2024: 名古屋大学, 情報学研究科, 教授 2017: 名古屋大学, 大学院情報科学研究科, 教授 2016: 名古屋大学, 情報科学研究科, 助教 2013: 名古屋大学, 大学院情報科学研究科, 教授 2008 – 2013: Nagoya University, 情報科学研究科, 教授 … More 2009: Nagoya University, 大学院・情報科学研究科, 教授 2009: 名古屋大学, 情報文化学部・自然情報学科・複雑システム系, 教授 2007: 名古屋大学, 大学院・情報科学研究科, 教授 2007: Tokyo Institute of Technology, 学術国際情報センター, 准教授 2002 – 2006: 東京工業大学, 学術国際情報センター, 助教授 2002: 東京工業大学, 大学院・総合理工学研究科, 助教授 2001: 国立遺伝学研究所, 生命情報・DDBJ研究センター, 助手 1999: 国立遺伝学研究所, 生命情報研究センター, 助手 Less
Review Section/Research Field	Principal Investigator Biological Sciences / Transformative Research Areas, Section (III) / Basic Section 62010:Life, health and medical informatics-related / Applied genomics / Biological Sciences / Bioinformatics/Life informatics / Science and Engineering Except Principal Investigator Biophysics / Transformative Research Areas, Section (III) / Basic Section 43040:Biophysics-related … More / Medium-sized Section 90:Biomedical engineering and related fields / General anatomy (including histology/embryology) / Life / Health / Medical informatics / Biological Sciences / Living organism molecular science / Science and Engineering / Biological Sciences Less
Keywords	Principal Investigator 立体構造 / バイオインフォマティクス / modeller / データベース / 構造変化 / シミュレーション / ノンコーディングRNA / 天然変性タンパク質 / タンパク質・核酸の構造・動態・機能 / 構造比較 … More / 構造機能相関 / local conformation / 3D profile / side-chain packing / tertiary structure / エントロピー / 二次構造 / ラマチャンドランプロット / 測鎖パッキング / 局所構造 / 3Dプロフィール / 側鎖パッキング / 変性とフォールディング / 構造・機能予測 / 軌道解析技術 / スーパーコンピュータ / 分子動力学 / 会合状態 / SCOP / 相互作用面 / 系統樹 / 構造形成 / 軌道アラインメント / Trp-Cage / 適合性関数 / プロフィール / 立体構造予測 / プロテオーム / 蛋白質 / ゲノム / 生物物理 / 生体生命情報学 / 3D-1D法 / デザイン / タンパク質 … More Except Principal Investigator バイオインフォマティクス / アクチン / 天然変性タンパク質 / 分子進化 / 立体構造 / タンパク質 / オルガネラ多重局在 / ノンコーディングRNA / 非典型的翻訳 / リボソーム / プロテオーム / Pi放出 / ATPase / 一細胞シークエンス / 免疫細胞受容体 / 一細胞計測 / 機械学習 / ベイズモデル / ペプチドHLA複合体 / T細胞受容体 / タンパク質デザイン / 細胞分化・組織形成 / 神経変性疾患 / 末梢神経 / 軸索ガイダンス / 細胞・組織 / 変異 / ヒトゲノム / 蛋白質立体構造 / 蛋白質立体構構造 / ゲノム変異 / 変異の意味づけ / レアバリアント / ヒトタンパク質 / ホモロジーモデリング / タンパク質立体構造 / 低頻度変異 / 蛋白質構造動態 / 蛋白質相互作用 / 構造解析 / 蛋白質複合体 / アクチン細胞骨格 / アクチン重合体 / X線蛋白質結晶学 / 電子顕微鏡 / 蛋白質複合体構造 / 電子顕微鏡単粒子解析 / X線結晶構造解析 / 重合・脱重合 / ATP加水分解 / 筋肉細い線維 / クライオ電子顕微鏡法 / Ｘ線結晶構造解析 / 筋収縮の調節 / アクチン・トレッドミリング / 細胞骨格 / 細胞運動 / タンパク質のダイナミクス / ハブタンパク質 / ダイナミクス / タンパク質のゆらぎ / X線小角散乱 / 核内タンパク質 / NMR / 高速AFM / Ｘ線小角散乱 / タンパク質・タンパク質間相互作用 / タンパク質-タンパク質間相互作用 / 二面角形ダイナミクス / 線形応答理論 / データベース / 基質結合→構造変化 / タンパク質立体構造データ / タンパク質ダイナミクス / 構造・機能予測 / 機能 / 立体権造 / 生理活性 / フォールディング / 分子設計 / 蛋白質 / ワンポット反応系 / 生体分子 / 進化 / 適応度地形 / タンパク工学 / 統計力学 / モンテカルロ法 / ウェットGA / 進化計算 / ナチュラルコンピューティング / 最適化 / アミノアシル化tRNA合成酵素 / 試験管ウィルス / シミュレーション / 統計物理 / 遺伝的アルゴリズム / DNAコンピューティング / タンパク質分類 / モデリング / 機能予測 / 偽遺伝子 / 立体構造予測 / データベース構築 / ホモロジー検索 / 局所構造 / ドメイン / 選択的スプライシング / ゲノム情報解析 Less

verification of the back-door model for actin phasphate release
- Principal Investigator
  
  小田俊郎
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Tokai Gakuin University
Development of protein design methods for T cell receptors with immune single cell sequencing data analysis
- Principal Investigator
  
  Yamaguchi Rui
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 90:Biomedical engineering and related fields
- Research Institution
  Aichi Cancer Center Research Institute
Collection, characterization and prediction of the unexplored proteinsPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Nagoya University
拡大し変容するタンパク質の世界（総括班）
- Principal Investigator
  
  田口英樹
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Institute of Science Tokyo
Structural changes of hetero-oligomers in the Protein Data BankPrincipal Investigator
- Principal Investigator
  
  Ota Motonori
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagoya University
Construction of analyses basis for understanding rare variants using protein structural information
- Principal Investigator
  
  Kinoshita Kengo
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tohoku University
Functional analyses of novel genes by incorporating bioinformatics into conventional methods
- Principal Investigator
  
  MASUDA TOMOYUKI
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  General anatomy (including histology/embryology)
- Research Institution
  University of Tsukuba
Protein-protein interactions that make the actin filament functional
- Principal Investigator
  
  Maeda Yuichiro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University
Target recognition and expression mechanism of intrinsically disordered protein
- Principal Investigator
  
  SATO Mamoru
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
Development and application of a database of intrinsic protein disorderPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Identification of the relationship between protein structural changes and ligand binding on the basis of 3D protein structures
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
Protein folding simulation on the large scale computer systemPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Nagoya University
  Tokyo Institute of Technology
Studies on protein structure-function relationship by de novo design
- Principal Investigator
  
  ISOGAI Yasuhiro
- Project Period (FY)
  2006 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Living organism molecular science
- Research Institution
  Toyama Prefectural University
  The Institute of Physical and Chemical Research
タンパク-タンパク相互作用面の構造インフォマティクスPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
グリッド計算機によるタンパク質foldingのバイオインフォマティクスPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
De novo design of artificial proteins with structural specificity as if they were native protainsPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Applied genomics
- Research Institution
  Tokyo Institute of Technology
ゲノム情報からのタンパク質構造の分類と予測
- Principal Investigator
  
  西川建
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics
タンパク質の立体構造プロフィールと極値分布を用いた構造認識法の開発Principal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
ナチュラルコンピューティングの分子実現とその設計論
- Principal Investigator
  
  山村雅幸
- Project Period (FY)
  2002 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tokyo Institute of Technology
コンピュータを利用したタンパク質の理論的デノボ・デザインPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Genetics

[Book] Protein Structural Changes Based on Structural Comparison in "Practical Guide to Life Science Databases" (pp. 151-170)2022
- Author(s)
  Koike Ryotaro、Ota Motonori
- Total Pages
  224
- Publisher
  Springer Nature
- Data Source
  KAKENHI-PLANNED-20H05932
[Book] 天然変性タンパク質の機能部位：理解の変容と進展（月刊細胞710号）2021
- Author(s)
  福地佐斗志，太田元規
- Total Pages
  78
- Publisher
  ニューサイエンス社
- Data Source
  KAKENHI-PROJECT-18H03331
[Book] ドロプレット形成のデータベースと予測（相分離生物学の全貌　白木賢太郎編）2020
- Author(s)
  太田元規，福地佐斗志
- Total Pages
  402
- Publisher
  東京化学同人
- Data Source
  KAKENHI-PROJECT-18H03331
[Book] タンパク質の立体構造入門2010
- Author(s)
  太田元規, 廣明秀一, ら
- Total Pages
  182
- Publisher
  講談社
- Data Source
  KAKENHI-PLANNED-21113007
[Book] タンパク質の立体構造入門 (藤博幸編)2010
- Author(s)
  太田元規,廣明秀一, 他
- Total Pages
  182
- Publisher
  講談社
- Data Source
  KAKENHI-PLANNED-21113007
[Book] タンパク質の分子設計「生物工学ハンドブック(日本生物工学会編)」2005
- Author(s)
  太田元規, 磯貝泰弘
- Publisher
  コロナ社
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] 人工タンパク質設計「タンパク質科学-構造・物性・機能」(後藤祐児, 谷澤克行, 桑島邦博編)2005
- Author(s)
  磯貝泰弘, 太田元規
- Publisher
  化学同人
- Data Source
  KAKENHI-PROJECT-15510163
[Book] 人工タンパク質設計「タンパク質科学・構造・物性・機能(後藤祐児, 谷澤克行, 桑島邦博編)」2005
- Author(s)
  磯貝泰弘, 太田元規
- Publisher
  化学同人
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] 生物工学ハンドブック(日本生物工学会編)1編3.2.3[3]2005
- Author(s)
  太田元規, 磯貝泰弘
- Publisher
  コロナ社
- Data Source
  KAKENHI-PROJECT-14085203
[Book] タンパク質立体構造のバイオインフォマティクス「バイオインフォマティクスがわかる(菅原秀明編)」2003
- Author(s)
  太田元規
- Publisher
  羊土社
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] タンパク質の理論構造生物学「生命情報学(五篠堀孝編)」2003
- Author(s)
  太田元規
- Publisher
  シュプリンガーフェアラーク東京
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] How AlphaFold2 Predicts Conditionally Folding Regions Annotated in an Intrinsically Disordered Protein Database, IDEAL2023
- Author(s)
  Anbo Hiroto、Sakuma Koya、Fukuchi Satoshi、Ota Motonori
- Journal Title
  
  Biology
  
  Volume: 12 Issue: 2 Pages: 182-182
- DOI
  10.3390/biology12020182
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05932
[Journal Article] Prediction of chaperonin GroE substrates using small structural patterns of proteins2023
- Author(s)
  Minami Shintaro、Niwa Tatsuya、Uemura Eri、Koike Ryotaro、Taguchi Hideki、Ota Motonori
- Journal Title
  
  FEBS Open Bio
  
  Volume: 13 Issue: 4 Pages: 779-794
- DOI
  10.1002/2211-5463.13590
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06519, KAKENHI-PLANNED-20H05932
[Journal Article] Structures and mechanisms of actin ATP hydrolysis2022
- Author(s)
  Kanematsu Yusuke、Narita Akihiro、Oda Toshiro、Koike Ryotaro、Ota Motonori、Takano Yu、Moritsugu Kei、Fujiwara Ikuko、Tanaka Kotaro、Komatsu Hideyuki、Nagae Takayuki、Watanabe Nobuhisa、Iwasa Mitsusada、Ma?da Yuichiro、Takeda Shuichi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 43
- DOI
  10.1073/pnas.2122641119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K03883, KAKENHI-PROJECT-20K06522, KAKENHI-PROJECT-22K06172, KAKENHI-PLANNED-20H05883, KAKENHI-PROJECT-19K12217, KAKENHI-PUBLICLY-21H00394, KAKENHI-PUBLICLY-22H04813, KAKENHI-PLANNED-20H05932
[Journal Article] 液-液相分離データベースを天然変性タンパク質の観点から整理する2022
- Author(s)
  福地佐斗志，小澤侑平，太田元規
- Journal Title
  
  生化学
  
  Volume: 94 Pages: 548-556
- Data Source
  KAKENHI-PLANNED-20H05932
[Journal Article] 軸2022
- Author(s)
  OTA Motonori
- Journal Title
  
  Seibutsu Butsuri
  
  Volume: 62 Issue: 3 Pages: 155-155
- DOI
  10.2142/biophys.62.155
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Data Source
  KAKENHI-PLANNED-20H05932
[Journal Article] Classification of proteins inducing liquid?liquid phase separation: sequential, structural and functional characterization2022
- Author(s)
  Ozawa Yuhei、Anbo Hiroto、Ota Motonori、Fukuchi Satoshi
- Journal Title
  
  The Journal of Biochemistry
  
  Volume: 173 Issue: 4 Pages: 255-264
- DOI
  10.1093/jb/mvac106
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05932
[Journal Article] Knowledge-based Modeling of SARS-CoV-2 Proteins and Predicting its Potential Drugs2021
- Author(s)
  HIJIKATA Atsushi、SHIONYU-MITSUYAMA Clara、NAKAE Setsu、SHIONYU Masafumi、OTA Motonori、KANAYA Shigehiko、SHIRAI Tsuyoshi
- Journal Title
  
  Seibutsu Butsuri
  
  Volume: 61 Issue: 2 Pages: 102-106
- DOI
  10.2142/biophys.61.102
- NAID
  130008002757
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01818, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-23K21721
[Journal Article] Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins2021
- Author(s)
  Hijikata Atsushi、Shionyu Clara、Nakae Setsu、Shionyu Masafumi、Ota Motonori、Kanaya Shigehiko、Shirai Tsuyoshi
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 18 Issue: 0 Pages: 226-240
- DOI
  10.2142/biophysico.bppb-v18.025
- NAID
  130008106407
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-18H03331, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-23K21721
[Journal Article] Structural insights into the regulation of actin capping protein by twinfilin C-terminal tail2021
- Author(s)
  Shuichi Takeda, Ryotaro Koike, Ikuko Fujiwara, Akihiro Narita, Makoto Miyata, Motonori Ota and Yuichiro Maeda
- Journal Title
  
  J Mol Biol
  
  Volume: 433 Issue: 9 Pages: 166891-166891
- DOI
  10.1016/j.jmb.2021.166891
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06522, KAKENHI-PUBLICLY-21H00394, KAKENHI-PROJECT-19K12217, KAKENHI-PROJECT-20K06591, KAKENHI-PLANNED-20H05932
[Journal Article] 天然変性タンパク質の機能部位：理解の変容と進展2021
- Author(s)
  福地佐斗志，太田元規
- Journal Title
  
  細胞
  
  Volume: 53 Pages: 533-536
- Data Source
  KAKENHI-PLANNED-20H05932
[Journal Article] Crystal structure of human V-1 in the apo form2021
- Author(s)
  Shuichi Takeda, Ryotaro Koike, Takayuki Nagae, Ikuko Fujiwara, Akihiro Narita, Yuichiro Maeda, Motonori Ota
- Journal Title
  
  Acta Crystallogr F Struct Biol Commun
  
  Volume: 77 Issue: 1 Pages: 13-21
- DOI
  10.1107/s2053230x20016829
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K12217, KAKENHI-PROJECT-20K06522, KAKENHI-PROJECT-20K06591, KAKENHI-PUBLICLY-19H05390, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-18H03331
[Journal Article] Evaluating cepharanthine analogues as natural drugs against SARS‐CoV‐22021
- Author(s)
  Hijikata Atsushi、Shionyu‐Mitsuyama Clara、Nakae Setsu、Shionyu Masafumi、Ota Motonori、Kanaya Shigehiko、Hirokawa Takatsugu、Nakajima Shogo、Watashi Koichi、Shirai Tsuyoshi
- Journal Title
  
  FEBS Open Bio
  
  Volume: 12 Issue: 1 Pages: 285-294
- DOI
  10.1002/2211-5463.13337
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12211, KAKENHI-PROJECT-18H03331, KAKENHI-PROJECT-21K15458, KAKENHI-PLANNED-20H05932, KAKENHI-PROJECT-23K21721
[Journal Article] Knowledge‐based structural models of SARS‐CoV‐2 proteins and their complexes with potential drugs2020
- Author(s)
  Hijikata Atsushi、Shionyu‐Mitsuyama Clara、Nakae Setsu、Shionyu Masafumi、Ota Motonori、Kanaya Shigehiko、Shirai Tsuyoshi
- Journal Title
  
  FEBS Letters
  
  Volume: 594 Issue: 12 Pages: 1960-1973
- DOI
  10.1002/1873-3468.13806
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H01818, KAKENHI-PROJECT-18H03331
[Journal Article] Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins2019
- Author(s)
  Koike Ryotaro、Amano Mutsuki、Kaibuchi Kozo、Ota Motonori
- Journal Title
  
  Protein Science
  
  Volume: 29 Issue: 2 Pages: 564-571
- DOI
  10.1002/pro.3789
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12217, KAKENHI-PUBLICLY-19H05390, KAKENHI-PROJECT-18H03331, KAKENHI-PROJECT-17K07383
[Journal Article] All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins2019
- Author(s)
  Koike Ryotaro、Ota Motonori
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 16 Issue: 0 Pages: 280-286
- DOI
  10.2142/biophysico.16.0_280
- NAID
  130007752770
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12217, KAKENHI-PUBLICLY-19H05390, KAKENHI-PROJECT-18H03331
[Journal Article] 天然変性タンパク質：既知のこと，未知のこと2019
- Author(s)
  太田元規，福地佐斗志
- Journal Title
  
  実験医学
  
  Volume: 37 Pages: 3077-3082
- Data Source
  KAKENHI-PROJECT-18H03331
[Journal Article] Using 1HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method2018
- Author(s)
  Okazaki Hiroki、Matsuo Naoki、Tenno Takeshi、Goda Natsuko、Shigemitsu Yoshiki、Ota Motonori、Hiroaki Hidekazu
- Journal Title
  
  Protein Science
  
  Volume: 27 Issue: 10 Pages: 1821-1830
- DOI
  10.1002/pro.3485
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H03331
[Journal Article] MICAN-SQ: A sequential protein structure alignment program that is applicable to monomers and all types of oligomers2018
- Author(s)
  Shintaro Minami, Kengo Sawada, Motonori Ota, and George Chikenji
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 19 Pages: 3324-3331
- DOI
  10.1093/bioinformatics/bty369
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07315, KAKENHI-PROJECT-18H03331, KAKENHI-PROJECT-17J02339
[Journal Article] IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels2016
- Author(s)
  Kota Kasahara and Kengo Kinoshita
- Journal Title
  
  Plos One
  
  Volume: 11 Issue: 12 Pages: e0167524-e0167524
- DOI
  10.1371/journal.pone.0167524
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H02773, KAKENHI-PROJECT-16K18526
[Journal Article] Comprehensive analysis of motions in molecular dynamics trajectories of the actin capping protein and its inhibitor complexes2016
- Author(s)
  Koike, R., Takeda, S., Maeda, Y., Ota, M.
- Journal Title
  
  Proteins
  
  Volume: 未定 Issue: 7 Pages: 948-956
- DOI
  10.1002/prot.25043
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25650064, KAKENHI-PROJECT-26251017, KAKENHI-PROJECT-16K14708
[Journal Article] Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population2016
- Author(s)
  Matsuyuki Shirota and Kengo Kinoshita
- Journal Title
  
  Database
  
  Volume: 1 Pages: 1-15
- DOI
  10.1093/database/baw124
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H02773
[Journal Article] GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes2014
- Author(s)
  Kasahara K and Kinoshita K
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 15 Issue: 1 Pages: 12-12
- DOI
  10.1186/1471-2105-15-12
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22136005, KAKENHI-PROJECT-15H02773
[Journal Article] Hierarchical description and extensive classification of protein structural changes by Motion Tree2014
- Author(s)
  Koike, R., Ota, M., and Kidera, A.
- Journal Title
  
  J. Mol. Biol
  
  Volume: 426 Issue: 3 Pages: 752-762
- DOI
  10.1016/j.jmb.2013.10.034
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007, KAKENHI-PROJECT-23247027
[Journal Article] IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners2014
- Author(s)
  Fukuchi, S., Amemiya, T., Sakamoto, S., Nobe, Y., Hosoda, K., Kado, Y., Murakami, S.D., Koike, R., Hiroaki, H., and Ota, M.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 42 Issue: D1 Pages: D320-D325
- DOI
  10.1093/nar/gkt1010
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007
[Journal Article] Accidental interaction between PDZ domains and diclofenac revealed by NMR-assisted virtual screening2013
- Author(s)
  Tenno, T., Goda, N., Umetsu, Y., Ota, M., Kinoshita, K., and Hiroaki, H.
- Journal Title
  
  Molecules
  
  Volume: 18 Issue: 8 Pages: 9567-9581
- DOI
  10.3390/molecules18089567
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007
[Journal Article] An assignment of intrinsically disordered regions of proteins based on NMR structures.2013
- Author(s)
  M. Ota et al.
- Journal Title
  
  J. Struct. Biol.
  
  Volume: 181 Pages: 29-36
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] An assignment of intrinsically disordered regions of proteins based on NMR structures2013
- Author(s)
  M.Ota, H.Hiroaki, S.Fukuchi, et al.
- Journal Title
  
  J. Struct. Biol.
  
  Volume: 181巻 Issue: 1 Pages: 29-36
- DOI
  10.1016/j.jsb.2012.10.017
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] IDEAL : intrinsically disordered proteins with extensive annotations and literature2012
- Author(s)
  S.Fukuchi.H.Hiroaki, M.Ota, et al.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 40巻 Issue: D1 Pages: D507-D511
- DOI
  10.1093/nar/gkr884
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007, KAKENHI-PROJECT-22570118
[Journal Article] SCPC : A method to structurally compare protein complexes2012
- Author(s)
  R.Koike, M.Ota
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 3 Pages: 324-330
- DOI
  10.1093/bioinformatics/btr654
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] Actin Capping protein and its inhibitor CARMIL : how intrinsically disordered regions function2011
- Author(s)
  Takeda Shuichi
- Journal Title
  
  Phys Biol.
  
  Volume: 8(3) Issue: 3 Pages: 35005-35005
- DOI
  10.1088/1478-3975/8/3/035005
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20227008, KAKENHI-PLANNED-21113007
[Journal Article] Amino acid substitutions at protein-protein interfaces that madulate the oligomeric state2010
- Author(s)
  Nishi, H., Ota, M.
- Journal Title
  
  Proteins
  
  Volume: 78 Pages: 1563-1574
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] 人工タンパク質設計の創薬への展開2009
- Author(s)
  磯貝泰弘, 太田元規
- Journal Title
  
  遺伝子医学-次世代創薬テクノロジー、実践:インシリコ創薬の最前線- 14
  
  Pages: 66-70
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] 遺伝子医学14、次世代創薬テクノロジー2009
- Author(s)
  磯貝泰弘、太田元規
- Journal Title
  
  実践:インシリコ創薬の最前線(メディカルドゥ)
  
  Pages: 66-70
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] タンパク質のフォールディング軌道を比較分類する2009
- Author(s)
  太田元規
- Journal Title
  
  分子シミュレーション研究会会誌アンサンブル 11
  
  Pages: 24-27
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] An evaluation of minimal cellular functions to sustain a bacterial cell2009
- Author(s)
  Azuma, Y., Ota, M.
- Journal Title
  
  BMC Syst.Biol. 3
  
  Pages: 111-111
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories.2008
- Author(s)
  H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
- Journal Title
  
  BMC Bioinformatics 9
  
  Pages: 344-344
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] 最小細胞機能セットの探求2007
- Author(s)
  東裕介, 太田元規
- Journal Title
  
  化学と工業 60
  
  Pages: 590-592
- NAID
  10019487696
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] Extracting characteristic properties of fitness landscape from in vitro evolution : A case study on infectivity of fd phage to E. coli2007
- Author(s)
  Aita, T., Hayashi, S., Toyota, H., Husimi, Y., Urabe, I, Yomo, T.
- Journal Title
  
  J. Theor. Biol. (accepted)
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] Experimental Rugged Fitness Landscape in Protein Sequence Space2007
- Author(s)
  Hayashi, S., Aita, T., Toyota, H., Husimi, Y., Urabe, I., Yomo, T.
- Journal Title
  
  PLoS ONE (accepted)
- NAID
  120006385827
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] λ Croフォールドのデノボデザイン2007
- Author(s)
  磯貝泰弘, 太田元規
- Journal Title
  
  生物物理 271
  
  Pages: 185-189
- NAID
  110006273087
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] Unfolding pathways of goatα-lactalbumin as revealed in multiple alignment of molecular dynamics trajectories.2007
- Author(s)
  T. Oroguchi, M. Ikeguchi, M. Ota, K. Kuwajima, A. Kidera
- Journal Title
  
  Mol. Biol. 371
  
  Pages: 1354-64
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] λCroフォールドのデノボデザイン2007
- Author(s)
  磯貝泰弘、太田元規
- Journal Title
  
  生物物理第47巻、第3号
  
  Pages: 185-189
- NAID
  110006273087
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] Enhanced partial order curve comparison over multiple protein folding trajectories.2007
- Author(s)
  H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
- Journal Title
  
  Comput. Syst. Bioinformatics. Conf. 6
  
  Pages: 299-310
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] A Hyperthermophilic Protein Acquires Function at the Cost of Stability2006
- Author(s)
  Mukaiyama, A., Haruki, M., Ota, M., Koga, Y., Takano, K., Kanay, a S.
- Journal Title
  
  Biochemistry 45
  
  Pages: 12673-12679
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] タンパク質フォールディングのバイオインフォマティクス2006
- Author(s)
  太田元規
- Journal Title
  
  パリティ 21
  
  Pages: 63-65
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] Stabilization of E. coli Ribonuclease HI by the ‘stability profile of mutant protein' (SPMP)-inspired random and non-random mutagenesis.2006
- Author(s)
  Haruki, M., Saito, Y., Ota, M., Nishikawa, K., Kanaya, S.
- Journal Title
  
  J.Biotechnol (掲載決定)
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] P-cats : Prediction of catalytic residues in proteins from the tertiary structures2005
- Author(s)
  Kinoshita, Ota
- Journal Title
  
  Bioinformatics 17
  
  Pages: 3570-3571
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] タンパク質のフォールディングシミュレーション2005
- Author(s)
  太田元規
- Journal Title
  
  シミュレーション 24
  
  Pages: 29-34
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] タンパク質の安定性と機能部位2004
- Author(s)
  太田元規
- Journal Title
  
  生物物理 255
  
  Pages: 230-231
- NAID
  110001820217
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure.2004
- Author(s)
  M.Ota et al.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories a unique pathway to native structure2004
- Author(s)
  M.Ota et al.
- Journal Title
  
  Proc. Natl. Acad. Sci. USA. 101
  
  Pages: 17658-17663
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  Ota, Ikeguchi, Kidera
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-16014208
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  Ota, Ikeguchi, Kidera
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] タンパク質の安定性と機能部位2004
- Author(s)
  太田元規
- Journal Title
  
  生物物理 255
  
  Pages: 230-231
- NAID
  110001820217
- Data Source
  KAKENHI-PROJECT-16014208
[Patent] タンパク質凍結保存用保護剤2014
- Inventor(s)
  廣明秀一,太田元規,福地佐斗志, 他
- Industrial Property Rights Holder
  廣明秀一,太田元規,福地佐斗志, 他
- Industrial Property Rights Type
  特許
- Filing Date
  2014-02-24
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質とバイオインフォマティクス2023
- Author(s)
  太田元規
- Organizer
  中性子構造生物学研究会
- Invited
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] 天然変性タンパク質データベース：IDEAL2022
- Author(s)
  ANBO Hiroto, SAKUMA Koya, KADO Yumiko, SAKAMOTO Shigetaka, HOSODA Kazuo, SHIKAMA Noriko, DAIYASU Hiromi, TAKAGI Daisuke, YAMAGUCHI Atsuko, HATANAKA Hideki, KOIKE Ryotaro, HIROAKI Hidekazu, FUKUCHI Satoshi, OTA Motonori
- Organizer
  トーゴーの日シンポジウム
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] IDEAL in 20222022
- Author(s)
  M. Ota
- Organizer
  ELIXIR IDP annual meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] How AlphaFold predicts conditionally-foldable segments in intrinsically disordered regions2022
- Author(s)
  K. Sakuma, H. Anbo, S. Fukuchi, M. Ota
- Organizer
  第60回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] in silicoによる液滴関連タンパク質の分類と解析2022
- Author(s)
  小澤侑平，安保勲人，太田元規，福地佐斗志
- Organizer
  第45回分子生物学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] 液滴関連タンパク質の天然変性領域における特徴2022
- Author(s)
  小澤侑平，安保勲人，太田元規，福地佐斗志
- Organizer
  第12回生物物理学会関東支部会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] AlphaFold2は天然変性領域中の機能部位をどう予測するのか?2022
- Author(s)
  安保勲人，佐久間航也，福地佐斗志，太田元規
- Organizer
  第45回分子生物学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Structural flexibility of actin in molecular dynamics simulation2021
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  環太平洋国際化学会議2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] 液滴形成の生命情報解析2021
- Author(s)
  太田元規，福地佐斗志
- Organizer
  相分離メガネをかけて生命現象を見てみよう(トランスフォーマティブ化学生命融合大学院プログラム)
- Invited
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Structural characterization of homologous hetero-oligomers2021
- Author(s)
  Kota Ito, Clara Shionyu, Yasunobu Sugimoto, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Protein kinases phosphorylate long intrinsically disordered regions of substrate proteins2021
- Author(s)
  Ryotaro Koike, Mutsuki Amano, Kozo Kaibuchi, Motonori Ota
- Organizer
  環太平洋国際化学会議2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Directed Protein-Protein Interaction Network Representing Intracellular Signaling Pathways2021
- Author(s)
  Wenruo Cao, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Structural flexibility of actin in molecular dynamics simulation2021
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  環太平洋国際化学会議2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Small structural pattern common in chaperonin GroE substrate proteins2021
- Author(s)
  S. Minami, T. Niwa, E. Uemura, R. Koike, H. Taguchi, M. Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Elastic network model analysis shows distinct flexibilities of capping protein bound to CARMIL or twinfilin2021
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Elastic network model analysis shows distinct flexibilities of capping protein bound to CARMIL or twinfilin2021
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 異なる機能状態にあるアクチンの構造ゆらぎとその相関関係2021
- Author(s)
  小池亮太郎，森次圭，太田元規
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Protein kinases phosphorylate long intrinsically disordered regions of substrate proteins2021
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  環太平洋国際化学会議2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] 異なる機能状態にあるアクチンの構造ゆらぎとその相関関係2021
- Author(s)
  小池亮太郎，森次圭，太田元規
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 液滴形成の生命情報解析2021
- Author(s)
  太田元規，福地佐斗志
- Organizer
  相分離メガネをかけて生命現象を見てみよう(トランスフォーマティブ化学生命融合大学院プログラム)
- Invited
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Structural characterization of homologous hetero-oligomers2021
- Author(s)
  Kota Ito, Clara Shionyu, Yasunobu Sugimoto, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Relationship between Length of Intrinsically Disordered Regions and Protein Function2021
- Author(s)
  Haruka Tanimoto, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] 天然変性タンパク質データベース：IDEAL (@2021)2021
- Author(s)
  太田元規，嘉戸裕美子，坂本盛宇，細田和男，鹿間周子，大安裕美，高木大輔，安保勲人，山口敦子，畠中秀樹，小池亮太郎，廣明秀一，福地佐斗志
- Organizer
  トーゴーの日シンポジウム2021
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Relationship between Length of Intrinsically Disordered Regions and Protein Function2021
- Author(s)
  Haruka Tanimoto, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Directed Protein-Protein Interaction Network Representing Intracellular Signaling Pathways2021
- Author(s)
  Wenruo Cao, Ryotaro Koike, Motonori Ota
- Organizer
  第59回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 天然変性タンパク質データベース：IDEAL2020
- Author(s)
  太田元規，嘉戸裕美子，坂本盛宇，細田和男，山口敦子，畠中秀樹，小池亮太郎，廣明秀一，福地佐斗志
- Organizer
  トーゴーの日シンポジウム2020
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Structural flexibility of actin studied by molecular dynamics simulation2020
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  第58回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] データベースアノテーションに基づく液滴の分析2020
- Author(s)
  岩塚光輝，太田元規，福地佐斗志，安保勲人
- Organizer
  第58回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 液滴を作るタンパク質に見られる天然変性タンパク質2020
- Author(s)
  太田元規，福地佐斗志
- Organizer
  CBI学会2020年大会
- Invited
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Intrinsically disordered proteins (IDPs) included in droplets2020
- Author(s)
  Motonori Ota, Satoshi Fukuchi
- Organizer
  第43回日本分子生物学会
- Invited
- Data Source
  KAKENHI-PLANNED-20H05932
[Presentation] Intrinsically disordered proteins (IDPs) included in droplets2020
- Author(s)
  Motonori Ota, Satoshi Fukuchi
- Organizer
  第43回日本分子生物学会
- Invited
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 天然変性タンパク質データベース：IDEAL2019
- Author(s)
  太田元規．嘉戸裕美子，坂本盛宇，細田和男，山口敦子，畠中秀樹，小池亮太郎，廣明秀一，福地佐斗志
- Organizer
  トーゴーの日シンポジウム2019
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Structural pattern that would be recognized by GroE2019
- Author(s)
  Motonori Ota
- Organizer
  Patterns in protein sequence and structure (reloaded)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 液滴を作るタンパク質に見られる天然変性タンパク質2019
- Author(s)
  太田元規．福地佐斗志
- Organizer
  大阪大学蛋白研セミナー（第3回LLPS研究会）
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Description of structural changes by Motion Tree2019
- Author(s)
  Ryotaro Koike, Kei Moritsugu, Motonori Ota
- Organizer
  63rd Annual Meeting of the Biophysical Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 全原子Motion Treeとドメイン運動に伴う側鎖の運動2019
- Author(s)
  小池亮太郎，太田元規
- Organizer
  第19回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Structural flexibility of actin monomer in molecular dynamics simulation2019
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  11th Toyota Riken International Workshop, Actin Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] π-π相互作用と相分離現象2019
- Author(s)
  葉山雄揮，太田元規
- Organizer
  第2回LLPS研究会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] タンパク質ータンパク質間相互作用の有向ネットワークが示す細胞内情報伝達2019
- Author(s)
  葉山雄揮，小池亮太郎，太田元規
- Organizer
  第19回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] A database of intrincially disordered proteins: IDEAL2019
- Author(s)
  Motonori Ota
- Organizer
  Elixir IDP user community meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Full-atom Motion Tree detects side-chain motions and their coupling with domain motions2019
- Author(s)
  Ryotaro Koike, Motonori Ota
- Organizer
  第57回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 天然変性タンパク質データベース：IDEAL2018
- Author(s)
  太田元規，嘉戸裕美子，坂本盛宇，細田和男，小池亮太郎，廣明秀一，福地佐斗志
- Organizer
  トーゴーの日シンポジウム2018
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 類縁タンパク質立体構造中の二次構造スワップの解析2018
- Author(s)
  柴田哲郎，南慎太朗，小池亮太郎，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] A database of intrinsically disordered protein: IDEAL (and its application to Protean segments)2018
- Author(s)
  Motonori Ota
- Organizer
  17th European Conference on Computational Biology Pre-meeting "Intrinsically disordered proteins: advances and state-of-the-art of the field"
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Property of intrinsically disordered "hub" proteins2018
- Author(s)
  Motonori Ota
- Organizer
  4th Symposium on non-globular proteins
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] リン酸化によって誘起されるイベントのRDF記述フォーマット2018
- Author(s)
  嘉戸裕美子，細田和男，坂本盛宇，小池亮太郎，福地佐斗志，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] リン酸化部位を含む天然変性領域2018
- Author(s)
  小池亮太郎，天野睦紀，貝淵弘三，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] How the binding of CP (capping protein) to the B-end of actin filaments is regulated2014
- Author(s)
  Takeda S., Koike R., Ota M., Maeda Y.
- Organizer
  43rd European Muscle Conference
- Place of Presentation
  オーストリア
- Year and Date
  2014-09-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26251017
[Presentation] Regulation of capping protein (CP=CapZ) association with the B-end of actin filament2014
- Author(s)
  Takeda S., Koike R., Ota M., Maeda Y
- Organizer
  Gordon Research Conference "Muscle and Molecular Motors"
- Place of Presentation
  USA
- Year and Date
  2014-07-06
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26251017
[Presentation] Structural analysis of protean segments (ProSs) in intrinsically disordered proteins (IDPs)2013
- Author(s)
  D.Shaji, T.Amemiya, S.Fukuchi & M.Ota
- Organizer
  第13回日本蛋白質科学会
- Place of Presentation
  鳥取
- Year and Date
  2013-06-12
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Rho family の可動領域におけるタンパク質間相互作用の解析2013
- Author(s)
  伴知晃，太田元規
- Organizer
  第３６回日本分子生物学会
- Place of Presentation
  神戸
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Structural study on REV7, the adaptor protein coordinating REV1 and REV3 polymerase in ttanslesion DNA synthesis2013
- Author(s)
  Sotaro Kikuchi, Kodai Hara, Toshiyuki Shimizu, Mamoru Sato, Hiroshi Hashimoto
- Organizer
  International Conference on Structural Genomics-Structural Life Science-(ICSG2013-SLS)
- Place of Presentation
  Keio Plaza Hotel Sapporo in Sapporo
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] 天然変性タンパク質データベースIDEAL の機能拡張 ―PPI ネットワーク2013
- Author(s)
  T.Amemiya, H.Hiroaki, M.Ota & S.Fukuchi, et al.
- Organizer
  第51回日本生物物理学会
- Place of Presentation
  京都
- Year and Date
  2013-10-28
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Hierarchical description of protein structural change by Motion Tree2013
- Author(s)
  M. Ota
- Organizer
  Satellite Meeting of ICMS2013 in Nagoya
- Place of Presentation
  名古屋
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] MotionTree 法によるホモダイマータンパク質の構造変化の解析2013
- Author(s)
  堀井達哉，太田元規
- Organizer
  第１３回日本蛋白質科学会
- Place of Presentation
  鳥取
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Collection and annotation of intrinsically disordered protein2013
- Author(s)
  M. Ota
- Organizer
  The 2nd ISIDP Symposium
- Place of Presentation
  理研鶴見研究所
- Year and Date
  2013-01-20
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] タンパク質立体構造データ解析私論2013
- Author(s)
  太田元規
- Organizer
  生物物理若手の会，第５３回夏の学校
- Place of Presentation
  伊豆長岡
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Motion Tree を利用した capping protein の動的構造解析2013
- Author(s)
  M. Ota et al.
- Organizer
  第５１回日本生物物理学会
- Place of Presentation
  京都
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] The IDEAL database, Intrinsically disordered proteins with extensive annotations and literature2012
- Author(s)
  S.Fukuchi, H.Hiroaki, M.Ota, et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Actin capping protein and its inhibitor CARMIL: how intrinsically disordered regions function2012
- Author(s)
  M. Ota et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] What happens on the histone multimers in the gas phase?2012
- Author(s)
  Kazumi Saikusa, Sotaro Fuchigami, Kyohei Takahashi, Yuuki Asano, Aritaka Nagadoi, Hiroaki Tachiwana, Hitoshi Kurumizaka, Mitsunori Ikeguchi, Yoshifumi Nishimura, Satoko Akashi
- Organizer
  19th International Conference on Mass Spectrometry
- Place of Presentation
  Kyoto International Conference Center, Kyoto
- Year and Date
  2012-09-16
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Actin capping protein and its inhibitor CARMIL : how intrinsically disordered regions function2012
- Author(s)
  M.Ota, et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Database for the research of intrinsically disordered proteins2011
- Author(s)
  Ota, M.
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Assignment of intrinsically disordered regions based on NMR structural data2011
- Author(s)
  Ota, M.
- Organizer
  ISDIP
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 蛋白質複合体のための構造比較法SCPCの開発2011
- Author(s)
  小池亮太郎、太田元規
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  兵庫県立大
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 蛋白質複合体のための構造比較法の開発2011
- Author(s)
  小池亮太郎、太田元規
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  ホテル阪急エキスポパーク
- Year and Date
  2011-06-08
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] How intrinsically disordered regions function : Lessons from CARMIL peptide cases2011
- Author(s)
  Ota, M.
- Organizer
  立命館大学国際シンポジウム
- Place of Presentation
  草津
- Year and Date
  2011-01-30
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 進化的起源を同じくする酵素群における機能とドメイン構成の多様性について2011
- Author(s)
  丹谷恵子、太田元規
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  ホテル阪急エキスポパーク
- Year and Date
  2011-06-07
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Database for the research of intrinsically disordered proteins2011
- Author(s)
  太田元規
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(招待講演)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] ミニマム細胞の設計原理:比較ゲノムからのアプローチ2011
- Author(s)
  太田元規
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  兵庫県立大(招待講演)
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質のデータベース構築と解析2010
- Author(s)
  太田元規
- Organizer
  文科省「新学術領域研究(天然変性蛋白質)」第1回公開シンポジウム
- Place of Presentation
  理化学研究所横浜研究所
- Year and Date
  2010-01-19
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] 天然変性タンパク質:バイオインフォマティクスによるアプローチ2010
- Author(s)
  太田元規
- Organizer
  岡崎統合バイオサイエンスセンター・サマースクール
- Place of Presentation
  岡崎統合バイオサイエンスセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] NMRモデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回日本蛋白質科学会年会ワークショップ「天然変性タンパク質研究が目指すサイエンス」
- Place of Presentation
  札幌コンベンションセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] NMRモデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回蛋白質科学会
- Place of Presentation
  札幌
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質の相互作用部位データベースの開発と解析2010
- Author(s)
  黒木隆博, 太田元規
- Organizer
  第48回生物物理学会
- Place of Presentation
  東北大学
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Enzymatic function and conformational change2010
- Author(s)
  太田元規
- Organizer
  Fifty Years of Biophysical Research at Nagoya University
- Place of Presentation
  名古屋大学 (愛知県)
- Year and Date
  2010-03-13
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Intrinsically disordered regions in NMR models2010
- Author(s)
  Ota, M.
- Organizer
  Gordon conference
- Place of Presentation
  Davidson, NC, USA
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] RESAT-vector を用いた天然変性タンハク質配列の網羅的検証系の確立2010
- Author(s)
  合田(天野)名都子,太田元規,廣明秀一, 他
- Organizer
  第10回蛋白質科学会
- Place of Presentation
  札幌
- Year and Date
  2010-06-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質:バイオインフォマティクスによるアプローチ2010
- Author(s)
  太田元規
- Organizer
  岡崎統合バイオサイエンスセンターサマースクール
- Place of Presentation
  岡崎
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] NMR モデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回日本蛋白質科学会年会
- Place of Presentation
  札幌コンベンションセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] 酵素タンパク質の運動、機能、ドメイン構成2009
- Author(s)
  太田元規
- Organizer
  CBRC2009
- Place of Presentation
  生命情報工学研究センター (東京都)
- Year and Date
  2009-12-04
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 天然変性タンパク質のデータベース構築と解析2009
- Author(s)
  太田元規、福地佐斗志
- Organizer
  第82回日本生化学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] タンパク質間相互作用面での Hotspot におけるアミル酸置換2009
- Author(s)
  西羽美, 太田元規
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本全日空ホテルニュースカイ (熊本県)
- Year and Date
  2009-05-22
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 天然変性タンパク質のプロテオーム情報解析2009
- Author(s)
  福地佐斗志, 太田元規
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県)
- Year and Date
  2009-12-11
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質のデータベース構築と解析2009
- Author(s)
  太田元規, 福地佐斗志
- Organizer
  第82回日本生化学会
- Place of Presentation
  神戸ポートアイランド(兵庫県)
- Year and Date
  2009-10-21
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 大きなタンパク質のフォールディングシミュレーション2009
- Author(s)
  太田元規
- Organizer
  2009年度「タンパク質・ゲノム構造」勉強会
- Place of Presentation
  諏訪
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 大きなタンパク質のフォールディングシミュレーション2009
- Author(s)
  太田元規
- Organizer
  2009年度「タンパク質・ゲノム構造」勉強会
- Place of Presentation
  聴泉閣かめや (長野県)
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] ヒト・マウスをターゲットとしたデータベース : COXPRESdbとSAHG2008
- Author(s)
  木下賢吾, 太田元規
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Amino acid substitutions on protein-protein interfaces that modulate alternation of oligomeric state2008
- Author(s)
  Hafumi Nishi, Motnori Ota
- Organizer
  International symposium on frontiers of computational science 2008
- Place of Presentation
  Nagoya
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] タンパク質問相互作用面の形成-アミノ酸置換と会合状態変化2008
- Author(s)
  西羽美, 太田元規
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Motion Tree法による蛋白質構造変化の階層的記述2008
- Author(s)
  小池亮太郎, 太田元規, 木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場、福岡
- Year and Date
  2008-12-04
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 祖先型と最近接種ミオグロビンの自動酸化反応の温度依存性2007
- Author(s)
  石田学、村上裕太、安田温、山崎伊織、太田元規、磯貝泰弘、今井清博
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18310149
[Presentation] Evolutional insight from a set of minimal cellular functions2007
- Author(s)
  Azuma, Y. and Ota, M
- Organizer
  GIW2008
- Place of Presentation
  Singapore
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 組換え祖先型ミオグロビン:酸素結合特性に対するpH及び温度の効果2007
- Author(s)
  石田学、山崎伊織、村上裕太、太田元規、磯貝泰弘、今井清博
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18310149
[Presentation] Difference of oligomeric states in protein families: amino acid composition and substitutions on protein-protein interfaces2007
- Author(s)
  H. Nishi and M. Ota
- Organizer
  VII European Symposium of the Protein Society
- Place of Presentation
  Stockholm
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Annotating protein-folding funnel by landscape profile and network2007
- Author(s)
  M. Ota, M. Ikeguchi, A. Kidera
- Organizer
  VII European Symposium of the Protein Society
- Place of Presentation
  Stockholm
- Data Source
  KAKENHI-PROJECT-19300101

1. ISOGAI Yasuhiro (00201921)

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2. IKEGUCHI Mitsunori (60261955)

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3. FUKUCHI Satoshi (70360336)

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4. Shuichi Takeda (50509081)

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5. KIDERA Akinori (00186280)

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6. SATO Mamoru (60170784)

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7. SHIBATA Takehiko (70087550)

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8. AKASHI Satoko (10280728)

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9. ISHONO Yoshizumi (30346837)

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10. HIGO Jyunichi (80265719)

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11. NISHIMURA Yoshifumi (70107390)

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12. FUJII Yoshiaki (00098146)

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13. ISHIKAWA Fuyuki (30184493)

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14. NAKAMURA Haruki (80134485)

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15. MORIKAWA Kousuke (80012665)

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16. HIROAKI Hidekazu (10336589)

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17. Maeda Yuichiro (10321811)

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18. Tomoharu Matsumoto (30392880)

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19. Mahito Kikumoto (20462880)

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20. Kayo Maeda (00321810)

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21. Ryotaro Koike (20381577)

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22. Kinoshita Kengo (60332293)

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23. SHIRAI TSUYOSHI (00262890)

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24. MASUDA TOMOYUKI (70372828)

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25. Yamaguchi Rui (90380675)

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26. 西川建 (10093288)

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27. 小林薫(深海薫) (20225494)

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28. 輪湖博 (60158607)

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29. 梅山秀明 (20050619)

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30. 富井健太郎 (40357570)

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31. 山村雅幸 (00220442)

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32. 樺島祥介 (80260652)

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33. 木賀大介 (30376587)

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34. 伏見譲 (80011641)

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35. 春木満 (30273593)

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36. 染谷博司 (00333518)

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37. 新田克巳 (60293073)

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38. 喜多一 (20195241)

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39. 井上真郷 (70376953)

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40. 坂本健作 (50240685)

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41. 成田哲博 (30360613)

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42. 松下博和 (80597782)

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43. 岡村文子 (10546948)

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44. 吉田亮 (70401263)

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45. 小田俊郎 (20321739)

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46. 岩佐充貞 (60509082)

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47. 田口英樹 (40272710)

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48. 千葉志信 (20523517)

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49. 永井義隆 (60335354)

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50. NIWA Tatsuya

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51. SHIONYU Masafumi

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52. 森次圭

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53. 木寺詔記

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54. 千見寺浄慈

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55. 土方敦司

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Oota Motonori 太田 元規

Motonori Ota 太田 元規

OTA Motonori 太田 元規

太田 元規 オオタ モトノリ

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Structural changes of hetero-oligomers in the Protein Data BankPrincipal Investigator

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Development and application of a database of intrinsic protein disorderPrincipal Investigator

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Protein folding simulation on the large scale computer systemPrincipal Investigator

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タンパク-タンパク相互作用面の構造インフォマティクスPrincipal Investigator

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Oota Motonori 太田元規

Motonori Ota 太田元規

OTA Motonori 太田元規

太田元規オオタモトノリ

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