KODA Daisuke 神田大輔

… Alternative Names

KOHDA Daisuke 神田大輔

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Researcher Number	80186618
Other IDs
External Links
Affiliation (Current)	2025: 九州大学, 生体防御医学研究所, 特任教授
Affiliation (based on the past Project Information) *help	2024: 九州大学, 生体防御医学研究所, 特任教授 2003 – 2024: 九州大学, 生体防御医学研究所, 教授 2001: Kyushu University, professor, 生体防御医学研究所・バイオサイエンス研究, 教授 2000: 岡崎国立共同研究機構, 生物分子工学研究所, 主任研究員 1998: Biomolecular Engineering Research Institute, 研究員 … More 1994: Tokyo Metropolitan Institute of Medical Science Researcher, 生理活性物質研究部門, 研究員 1993: 生理活性物質研究部門, 研究員 1993: 財団法人東京都臨床医学総合研究所, 生理活性物質研究部門, 研究員 1991: (財)東京都臨床医学総合研究所, 生理活性物質研究部, 研究員 1991: The Tokyo Metropolitan Institute of Medical Science, 生理活性物質研究部門, 研究員 1990: (財)東京都臨床医学総合研究所, 生理活性物質研究部門, 研究員 1988: Tokyo Metropolitan Institute of Medical Science, Researcher, 生理活性物質研究部門, 研究員 1987: (財)東京都臨床医学総合研究所, 生理活性, 研究員 Less
Review Section/Research Field	Principal Investigator Complex systems / Structural biochemistry / Biological Sciences / Basic Section 43040:Biophysics-related / Biophysics / Structural biochemistry Except Principal Investigator 物質生物化学 / Applied microbiology / Biological Sciences / Medium-sized Section 37:Biomolecular chemistry and related fields … More / Living organism molecular science / Cell biology / Structural biochemistry / Complex systems / Molecular biology Less
Keywords	Principal Investigator タンパク質 / X線結晶解析 / 動的構造 / ミトコンドリア / NMR / 蛋白質 / Ｘ線結晶解析 / Tom20 / 融合タンパク質 / オリゴ糖転移酵素 … More / SH3ドメイン / 複合体安定化技術 / 分子認識 / プレ配列 / 細胞内輸送 / 核磁気共鳴法 / タンパク質輸送 / 膜タンパク質 / 立体構造 / コンシステンシー原理 / 自由エネルギー直線関係 / フォールディング / 立体構造形成 / 新測定技術 / 構造生命科学 / 海外共同研究者受入 / 海外研究者招聘 / 海外講演者招聘 / 海外研究者受入 / 海外派遣 / 国際共同研究 / NMR titration study / domain rearrangement / yeast, two-hybrid / pull-down assay / inter-domain interaction / PXA domain / SH3 domain / PX domain / 結晶化 / RVS167 / SNX3 / VPS17 / 酵母 / 小麦胚芽試験内合成系 / 発現系構築 / MDM1 / ソーティングネキシン14 / ソーティングネキシン13 / RGSドメイン / NMR滴定実験 / ドメインリアレンジメン / 酵母ツーハイブリッド / プルダウンアッセイ / ドメイン間相互作用 / PXAドメイン / PXドメイン / 高速ＡＦＭ / 電子顕微鏡単粒子解析 / Ｘ線小角散乱 / シグナル配列 / 高速AFM / 電子顕微鏡 / X線小角散乱 / Tim21 / MBP / 結晶コンタクト / タンパク質結晶 / Ｘ線結晶学 / X線結晶学 / ＡＦＭ / ＮＭＲ / 計算科学 / 計算シミュレーション / 結晶解析 / ODMR / AFM / 測定技術 / NMR緩和時間解析 / 脂質結合型糖鎖 / 古細菌 / N型糖鎖修飾 / 糖転移酵素 / 翻訳後修飾 / Ｎ型糖鎖修飾 / ジスルフィド結合 / 結晶コンタクト効果 / 複合体 / ＮＭＲ解析 / 環状ペプチド / ファージディスプレイ / プロリンリッチ配列 / ペプチドライブラリ / 構造生物学 / X線結晶構造 / 緩和時間解析 / SS結合 / プレ配列受容体 / 分子内ジスルフィド結合 / リガンド係留技術 / 標的シグナル / ,分子認識 / 膜透過チャネル / リフォールディング / 界面活性剤 / Tom40 / 立体構造決定 / GRB2 / Src ホモロジー3 / SH3 ドメイン / ホスホリパーゼCgamma … More Except Principal Investigator NMR / SH3 / Grb2 / X線結晶構造解析 / Vav / N-WASP / SH2 / 表面プラズモン共鳴 / プロタミン / ペプチドの機能改変 / 異常アミノ酸形成酵素NukM / リーダーペプチド / 脱水・環化 / 翻訳後修飾 / ペプチドデザイン / nukacin ISK-1 / 異常アミノ酸 / ランチビオティック / ケミカルバイオロジー / DNA複製 / 複製フォーク / シグナル伝達 / 膜タンパク質 / 構造生物学 / デストリン / 脂質ケミカルバイオロジー / 金ナノ粒子 / バクテリオロドプシン / KcsA / 相互作用 / 脂質 / epitope Deuterium labell / Fab fragment / hybridoma / Monoclonal antibody / alpha-Bungarotoxin / 核磁気共鳴 / ヘビ神経毒タンパク / α-ブンガロトキシン / エピトープ / Fab / 全重水素ラベル / 無血清培地化 / ハイブリドーマ / 単クローン抗体 / αーブンガロトキシン / DNA polymerase / Replication origin / Protein structure and function / Macromolecular complex / DNA replication machinery / Pyrococus / タンパク質相互利用 / ツーハイブリッド / 超好熱菌 / ヌクレアーゼ / ヘリカーゼ / 耐熱性 / アーキア / DNA修復 / DNAポリメラーゼ / 複製起点 / タンパク質の構造と機能 / 超分子複合体 / 複製装置 / ubl / protein degradation / vacuole / Apg / autophagy / タンパク質の脂質修飾 / APG3 / APG7 / APG8 / APG4 / 分泌経路 / 膜動態 / ユビキチン様タンパク質 / オートファゴソーム / オートファジー / tertiary structure IP3 / praline rich region / Neurop / PB2 / PBI / 好中級活性酸素発生系 / タイトジャンクション / Rho / 多核体病ウィルス / バキュロウィルス / Grb2-cSH3 / PRR / Vav-nSH3 / PTB様ドメイン / IP3 / radixin / 蛋白質立体構造 / PRR領域 / midkine / destrin / X-ray crystallography / three dimensional structure of protein / Solution Structure / ポリプロリンヘリックス / Ras / 溶液構造 / プロリンに富むペプチド / リン酸化チロシン / Tob / ArcB / 神経突起伸長 / GRB2 / 嫌気センサー / リン酸基転移反応 / 二成分系 / フィロポディア / 立体構造 / Ash / Link / ミッドカイン / Sos / Shc / proline-rich peptide / SH3 domain / IGF-II / heregulin alpha / erabutoxin b / solution structure / distance geometry / Sosペプチド / EGF / Sosペフチド / EGFレセプター / Distance geometry / Perdeuterated micelles / Bioactive peptides / 構造ー機能相関 / 膜融合性ペプチド / ディスタンスジオメトリ- / 全重水素化リン脂質ミセル / 生理活性ペプチド / 安定同位体標識 / リピドII複合体 / 細胞壁前駆体リピドII / 作用機作 / 抗菌ペプチド / 相互作用領域 / 2成分制御システムLiaRS / NMR解析 / lipidⅡ / アミノ酸の脱水・環化 / 修飾酵素の機能改変解析 / 核磁気共鳴（NMR）解析 / 細胞壁前駆体lipid II / 標的分子 / Nukacin ISK-1 / 結晶化 / 基質認識ドメイン / ケミカルバイオロジ / ケミカル・バイオロジ / Ｘ線結晶構造解析 / 一分子計測学 / 核磁気共鳴法 / 領域とりまとめ / PriAタンパク質 / チェックポイント制御 / DNA末端 / ゲノム安定性 / 高次構造 / DNA結合タンパク質 / X線構造解析 / DNA結合 / DNA3'末端 / PriAタンパク / 分子間相互作用 / ソフトな相互作用 / 核磁気共鳴法(NMR) / 物質輸送 / ソフトな分子間相互作用 / 生命秩序 / 膜インターフェイス / 構造機能相関 / 多次元NMR / アクチン結合タンパク質 / コフィリン Less

Residue-specific Linear Free Energy Relationship is the physicochemical basis of protein foldingPrincipal Investigator
- Principal Investigator
  
  神田大輔
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kyushu University
Establishment of research base for lipid chemical biology
- Principal Investigator
  
  松森信明
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 37:Biomolecular chemistry and related fields
- Research Institution
  Kyushu University
「動的構造生命科学を拓く新発想測定技術」の成果取りまとめを目指した組織活動Principal Investigator
- Principal Investigator
  
  神田大輔
- Project Period (FY)
  2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
Support activities aimed at international network formation in the research area of dynamic structural life sciencesPrincipal Investigator
- Principal Investigator
  
  Kohda Daisuke
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
New measurement techniques for visualizing live protein molecules at workPrincipal Investigator
- Principal Investigator
  
  Kohda Daisuke
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein moleculesPrincipal Investigator
- Principal Investigator
  
  Kohda Daisuke
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
Structural analysis and functional modification of unusual amino acid-forming enzyme, and the application to peptide engineering
- Principal Investigator
  
  SONOMOTO Kenji
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Kyushu University
Novel measurement techniques for visualizing 'live' protein molecules at workArea Organizer
- Area Organizer
  
  神田大輔
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Structural basis for N-linked glycosylation site occupancyPrincipal Investigator
- Principal Investigator
  
  KOHDA Daisuke
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Kyushu University
Lantibiotic engineering: peptide engineering approach using the modification enzymes
- Principal Investigator
  
  SONOMOTO Kenji
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Kyushu University
Integrative understanding of biological processes mediated by transient macromolecul ar complexes; New technology for visualizing physiologically metastable states
- Principal Investigator
  
  SHIMADA Ichio
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo
Development of experimental techniques for the investigation of transient molecular protein complexesPrincipal Investigator
- Principal Investigator
  
  KOHDA Daisuke
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Kyushu University
新規DNA結合モチーフ"TTpocket"を有する機能タンパク質の探索
- Principal Investigator
  
  正井久雄
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Molecular biology
- Research Institution
  Tokyo Metropolitan Organization for Medical Research
SH3ドメインに高親和性・特異的ペプチドの立体構造に基づいたライブラリデザインPrincipal Investigator
- Principal Investigator
  
  神田大輔
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Biophysics
- Research Institution
  Kyushu University
PX domain as a modulator of the cell signaling : the interaction of PX domains with SH3 domains and PXA domainsPrincipal Investigator
- Principal Investigator
  
  KOHDA Daiske
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  KYUSHU UNIVERCITY
ミトコンドリア外膜透過装置の立体構造と通過中のポリペプチド鎖のコンホメーションPrincipal Investigator
- Principal Investigator
  
  神田大輔
- Project Period (FY)
  2003 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
Molecular soft interactions regulating membrane-interface activities in living systems
- Principal Investigator
  
  AKUTSU Hideo
- Project Period (FY)
  2003 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
soft interaction for the recognition of mitochondrial targeting signalPrincipal Investigator
- Principal Investigator
  
  KOHDA Daisuke
- Project Period (FY)
  2003 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
Structural and functional analyses of the DNA replication machinery called replisome complex
- Principal Investigator
  
  ISHINO Yoshizumi
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Living organism molecular science
- Research Institution
  KYUSHU UNIVERSITY
Molecular Mechanism and Function of Ubiquitin-like System in Autophagy
- Principal Investigator
  
  OHSUMI Yoshinori
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Cell biology
- Research Institution
  National Institute for Basic Biology
Protein-protein interaction in intracellular signal transduction
- Principal Investigator
  
  INAGAKI Fuyuhiko
- Project Period (FY)
  1998 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Review Section
  
  Biological Sciences
- Research Institution
  Hokkaido University
  Tokyo Metropolitan Organization for Medical Research
NMRによるコフィリン・デストリンの立体構造解析と機関相関
- Principal Investigator
  
  HATANAKA Hideki
- Project Period (FY)
  1994
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tokyo Metropolitan Organization for Medical Research
Role of three dimensional structure of proteins in signal transduction
- Principal Investigator
  
  INAGAKI Fuyuhiko
- Project Period (FY)
  1994 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Tokyo Metropolitan Organization for Medical Research
SH3(src相同領域3)ドメインのNMRによる立体構造決定と機能部位の同定Principal Investigator
- Principal Investigator
  
  神田大輔
- Project Period (FY)
  1993
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  Structural biochemistry
- Research Institution
  Tokyo Metropolitan Organization for Medical Research
Elucidation of Molecular Mechanism of Signal Transduction Mediated by Growth Factor-Receptor System
- Principal Investigator
  
  INAGAKI Fuyuhiko
- Project Period (FY)
  1993 – 1994
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  Structural biochemistry
- Research Institution
  Tokyo Metropolitan Institute of Medical Science
Structure -Function relationship of Membrane Bound Peptides Using DPC Micelles
- Principal Investigator
  
  INAGAKI Fuyuhiko
- Project Period (FY)
  1990 – 1991
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  物質生物化学
- Research Institution
  The Tokyo Metropolitan Institute of Medical Science
Molecular Recognition of Antigen Determinant by Monoclonal Antibody Specific to Neurotoxins from Snake Venoms
- Principal Investigator
  
  INAGAKI Fuyuhiko
- Project Period (FY)
  1987 – 1988
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  物質生物化学
- Research Institution
  Tokyo Metropolitan Institute of Medical Science

[Book] Experimental approaches of NMR spectroscopy -Methodology and application to life science and materials science-2018
- Author(s)
  Hidekazu Hiroaki, Daisuke Kohda，Chapter 21, Protein-Ligand Interactions Studied by NMRを担当．
- Total Pages
  636
- Publisher
  Springer Nature, Singapore.
- ISBN
  9789811059650
- Data Source
  KAKENHI-PLANNED-26119002
[Book] SPring-8 Research Frontiers 2013　(ISSN 1349-0087)2014
- Author(s)
  James Nyirenda, Shunsuke Matsumoto, and Daisuke Kohda
- Total Pages
  153
- Publisher
  SPRing8
- Data Source
  KAKENHI-PROJECT-24370047
[Book] Glycoscience: Biology and Medicine (ISBN 978-4-431-54840-9)2014
- Author(s)
  Shunsuke Matsumoto, James Nyirenda, Daisuke Kohda
- Total Pages
  1556
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-24370047
[Book] いきなりはじめる構造生物学2011
- Author(s)
  神田大輔
- Total Pages
  260
- Publisher
  秀潤社
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Effects of targeting signal mutations in a mitochondrial presequence on the spatial distribution of the conformational ensemble in the binding site of Tom202022
- Author(s)
  Xiling Han, Nobuo Maita, Atsushi Shimada, Daisuke Kohda
- Journal Title
  
  Protein Science
  
  Volume: 31 Issue: 10
- DOI
  10.1002/pro.4433
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21K06033, KAKENHI-PROJECT-23K21298
[Journal Article] The time-zero HSQC method improves the linear free energy relationship of a polypeptide chain through the accurate measurement of residue-specific equilibrium constants.2022
- Author(s)
  Hayashi S, Kohda D.
- Journal Title
  
  J Biomol NMR
  
  Volume: 76 Issue: 3 Pages: 87-94
- DOI
  10.1007/s10858-022-00396-y
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K21298
[Journal Article] Retrospective study for the universal applicability of the residue-based linear free energy relationship in the two-state exchange of protein molecules.2022
- Author(s)
  Fujinami D, Hayashi S, Kohda D.
- Journal Title
  
  Sci Rep.
  
  Volume: 12 Issue: 1 Pages: 16843-16843
- DOI
  10.1038/s41598-022-21226-z
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K21298
[Journal Article] Crystal structure of the PX domain of Vps17p from <i>Saccharomyces cerevisiae</i>2022
- Author(s)
  Obita Takayuki、Inaka Koji、Kohda Daisuke、Maita Nobuo
- Journal Title
  
  Acta Crystallographica Section F Structural Biology Communications
  
  Volume: 78 Issue: 5 Pages: 210-216
- DOI
  10.1107/s2053230x22004472
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K06540, KAKENHI-PROJECT-23K21298, KAKENHI-PROJECT-19K05696
[Journal Article] The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon.2021
- Author(s)
  Taguchi Y, Yamasaki T, Ishikawa M, Kawasaki Y, Yukimura R, Mitani M, Hirata K, Kohda D.
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 941-941
- DOI
  10.1038/s42003-021-02473-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K21298
[Journal Article] Residue-Specific Kinetic Insights into the Transition State in Slow Polypeptide Topological Isomerization by NMR Exchange Spectroscopy.2021
- Author(s)
  Fujinami D, Hayashi S, Kohda D.
- Journal Title
  
  The Journal of Physical Chemistry Letters
  
  Volume: 12 Issue: 43 Pages: 10551-10557
- DOI
  10.1021/acs.jpclett.1c02387
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K21298
[Journal Article] Preface to the special issue on novel measurement techniques for visualizing ‘live’ protein molecules at work2020
- Author(s)
  Nishida Noritaka、Tsukazaki Tomoya、Kohda Daisuke
- Journal Title
  
  Biochimica et Biophysica Acta (BBA) - General Subjects
  
  Volume: 1864 Issue: 2 Pages: 129421-129421
- DOI
  10.1016/j.bbagen.2019.129421
- Data Source
  KAKENHI-WRAPUP-19H05452
[Journal Article] Conformational ensemble of an intrinsically flexible loop in mitochondrial import protein Tim21 studied by modeling and molecular dynamics simulations2020
- Author(s)
  Srivastava Arpita、Bala Siqin、Motomura Hajime、Kohda Daisuke、Tama Florence、Miyashita Osamu
- Journal Title
  
  Biochimica et Biophysica Acta (BBA) - General Subjects
  
  Volume: 1864 Issue: 2 Pages: 129417-129417
- DOI
  10.1016/j.bbagen.2019.129417
- Peer Reviewed
- Data Source
  KAKENHI-WRAPUP-19H05452
[Journal Article] Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study2020
- Author(s)
  Bala Siqin、Shinya Shoko、Srivastava Arpita、Ishikawa Marie、Shimada Atsushi、Kobayashi Naohiro、Kojima Chojiro、Tama Florence、Miyashita Osamu、Kohda Daisuke
- Journal Title
  
  Biochimica et Biophysica Acta (BBA) - General Subjects
  
  Volume: 1864 Issue: 2 Pages: 129418-129418
- DOI
  10.1016/j.bbagen.2019.129418
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06152, KAKENHI-PUBLICLY-19H04856, KAKENHI-WRAPUP-19H05452, KAKENHI-PROJECT-17H03641, KAKENHI-PROJECT-18J01012, KAKENHI-PROJECT-17K07309
[Journal Article] Biophysics at Kyushu University2020
- Author(s)
  Akiyama Ryo、Annaka Masahiko、Kohda Daisuke、Kubota Hiroyuki、Maeda Yusuke、Matsumori Nobuaki、Mizuno Daisuke、Yoshida Norio
- Journal Title
  
  Biophysical Reviews
  
  Volume: 12 Issue: 2 Pages: 245-247
- DOI
  10.1007/s12551-020-00643-2
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K19149, KAKENHI-PUBLICLY-20H04781, KAKENHI-PUBLICLY-20H05536, KAKENHI-PROJECT-20H00405, KAKENHI-PROJECT-18H01189
[Journal Article] A Radioisotope-free Oligosaccharyltransferase Assay Method2019
- Author(s)
  Yamasaki Takahiro、Kohda Daisuke
- Journal Title
  
  BIO-PROTOCOL
  
  Volume: 9 Issue: 5
- DOI
  10.21769/bioprotoc.3186
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Structural Basis of Protein Asn-Glycosylation by Oligosaccharyltransferases2018
- Author(s)
  Kohda Daisuke
- Journal Title
  
  Adv Exp Med Biol.
  
  Volume: 1104 Pages: 171-199
- DOI
  10.1007/978-981-13-2158-0_9
- ISBN
  9789811321573, 9789811321580
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states2018
- Author(s)
  Fujinami Daisuke、-Mahin Abdullah-Al、Elsayed Khaled M.、Islam Mohammad R.、Nagao Jun-ichi、Roy Urmi、Momin Sabrina、Zendo Takeshi、Kohda Daisuke、Sonomoto Kenji
- Journal Title
  
  Communications Biology
  
  Volume: 1 Issue: 1 Pages: 150-150
- DOI
  10.1038/s42003-018-0150-3
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002, KAKENHI-PROJECT-17H03797
[Journal Article] “Multiple partial recognitions in dynamic equilibrium” in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands2018
- Author(s)
  Kohda Daisuke
- Journal Title
  
  Biophysical Reviews
  
  Volume: 10 Issue: 2 Pages: 421-433
- DOI
  10.1007/s12551-017-0365-4
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Computational investigation of the conformational dynamics in Tom20-mitochondrial presequence tethered complexes2018
- Author(s)
  Srivastava Arpita、Tama Florence、Kohda Daisuke、Miyashita Osamu
- Journal Title
  
  Proteins: Structure, Function, and Bioinformatics
  
  Volume: 87 Issue: 1 Pages: 81-90
- DOI
  10.1002/prot.25625
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002, KAKENHI-PLANNED-26119006
[Journal Article] Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex.2017
- Author(s)
  Matsumoto S, Taguchi Y, Shimada A, Igura M, Kohda D.
- Journal Title
  
  Biochemistry
  
  Volume: 56 Issue: 4 Pages: 602-611
- DOI
  10.1021/acs.biochem.6b01089
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002, KAKENHI-PROJECT-15J05215, KAKENHI-PROJECT-16K21471
[Journal Article] Asn-linked oligosaccharide chain of a crenarchaeon, Pyrobaculum calidifontis, is reminiscent of the eukaryotic high-mannose-type glycan2017
- Author(s)
  Fujinami Daisuke、Taguchi Yuya、Kohda Daisuke
- Journal Title
  
  Glycobiology
  
  Volume: 27 Issue: 8 Pages: 701-712
- DOI
  10.1093/glycob/cwx044
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Comparative analysis of archaeal lipid-linked oligosaccharides that serve as oligosaccharide donors for Asn-glycosylation.2016
- Author(s)
  Taguchi Y, Fujinami D, Kohda D
- Journal Title
  
  J Biol Chem
  
  Volume: 291 Issue: 21 Pages: 11042-11054
- DOI
  10.1074/jbc.m115.713156
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Comparative analysis of archaeal lipid-linked oligosaccharides that serve as oligosaccharide donors for Asn-glycosylation2016
- Author(s)
  Taguchi Y, Fujinami D, Kohda D
- Journal Title
  
  Journal Biological Chemistry
  
  Volume: in press
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain2016
- Author(s)
  Shimada A, Yamaguchi A, Kohda D
- Journal Title
  
  Scietific Report
  
  Volume: 6 Issue: 1 Pages: 19565-19565
- DOI
  10.1038/srep19565
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] N-Glycosylation with Synthetic Undecaprenyl Pyrophosphate-Linked Oligosaccharide to Oligopeptides by PglB Oligosaccharyltransferase from Campylobacter jejuni2015
- Author(s)
  Ishiwata A, Taguchi Y, Lee YJ, Watanabe T, Kohda D, Ito Y.
- Journal Title
  
  Chembiochem
  
  Volume: 16 Issue: 5 Pages: 731-737
- DOI
  10.1002/cbic.201402658
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24370047, KAKENHI-PROJECT-26350966, KAKENHI-PROJECT-15H02443
[Journal Article] Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Archaeoglobus fulgidus.2015
- Author(s)
  Fujinami D, Nyirenda J, Matsumoto S, Kohda D
- Journal Title
  
  Carbohydrate Research
  
  Volume: 413 Pages: 55-62
- DOI
  10.1016/j.carres.2015.05.010
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-26119002
[Journal Article] Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.2015
- Author(s)
  Matsuoka R, Shimada A, Komuro Y, Sugita Y, Kohda D
- Journal Title
  
  Protein Science
  
  Volume: 25 Issue: 3 Pages: 754-768
- DOI
  10.1002/pro.2867
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-26119002, KAKENHI-PLANNED-26119006
[Journal Article] 新しいワインは新しい皮袋に入れよ2014
- Author(s)
  神田大輔
- Journal Title
  
  実験医学
  
  Volume: 32 Pages: 2661-2661
- Data Source
  KAKENHI-ORGANIZER-26119001
[Journal Article] Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus2014
- Author(s)
  Fujinami, D., Matsumoto, M., Noguchi, T., Sonomoto, K., Kohda, D.
- Journal Title
  
  Carbohydr Res
  
  Volume: 387C Pages: 30-36
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Overview2014
- Author(s)
  神田大輔
- Journal Title
  
  細胞工学　特集バイオＮＭＲ
  
  Volume: 33 Pages: 810-814
- Data Source
  KAKENHI-ORGANIZER-26119001
[Journal Article] Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus.2014
- Author(s)
  Fujinami D, Matsumoto M, Noguchi T, Sonomoto K, Kohda D
- Journal Title
  
  Carbohydr Res
  
  Volume: 387C Pages: 30-36
- DOI
  10.1016/j.carres.2014.01.021
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21121003, KAKENHI-PROJECT-24370047
[Journal Article] Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT2014
- Author(s)
  Esaki K, Yoshinaga S, Tsuji T, Toda E, Terashima Y, Saitoh T, Kohda D, Kohno T, Osawa M, Ueda T, Shimada I, Matsushima K, Terasawa H
- Journal Title
  
  FEBS J
  
  Volume: 281 Issue: 24 Pages: 552-566
- DOI
  10.1111/febs.13096
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-ORGANIZER-21121001, KAKENHI-PROJECT-24590048, KAKENHI-PUBLICLY-25121707, KAKENHI-PROJECT-26670326, KAKENHI-PROJECT-26860317
[Journal Article] Structural Basis of the Asparagine Side Chain Activation in N-Linked Protein Glycosylation2014
- Author(s)
  松本俊介，神田大輔
- Journal Title
  
  Seibutsu Butsuri
  
  Volume: 54 Issue: 3 Pages: 158-159
- DOI
  10.2142/biophys.54.158
- NAID
  130004719365
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Data Source
  KAKENHI-PROJECT-24370047
[Journal Article] 動的生命科学を拓く新発想測定技術ータンパク質が動作する姿を活写するー2014
- Author(s)
  神田大輔
- Journal Title
  
  ニュースレター１号
  
  Volume: 1 Pages: 1-10
- Data Source
  KAKENHI-ORGANIZER-26119001
[Journal Article] Energetics of the presequence-binding poses in mitochondrial protein import through Tom202013
- Author(s)
  Komuro, Y., Miyashita, N., Mori, T., Muneyuki, E., Saitoh, T., Kohda, D., Sugita, Y.
- Journal Title
  
  J Phys Chem B
  
  Volume: 117 Pages: 2864-2871
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Crystallographic and NMR evidence for flexibility in oligosaccharyltransferases and its catalytic significance2013
- Author(s)
  Nyirenda, J., Matsumoto, S., Saitoh, T., Maita, N., Noda, N. N., Inagaki, F., Kohda, D.
- Journal Title
  
  Structure
  
  Volume: 21 Pages: 32-41
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation.2013
- Author(s)
  Matsumoto S, Shimada A, Nyirenda J, Igura M, Kawano Y, Kohda D
- Journal Title
  
  Proc Natl Acad Sci USA
  
  Volume: 110 Issue: 44 Pages: 17868-17873
- DOI
  10.1073/pnas.1309777110
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21121003, KAKENHI-PROJECT-24370047, KAKENHI-PROJECT-24687014, KAKENHI-PUBLICLY-25121726
[Journal Article] Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases.2013
- Author(s)
  Matsumoto S, Shimada A, Kohda D
- Journal Title
  
  BMC Struct Biol
  
  Volume: 13 Issue: 1
- DOI
  10.1186/1472-6807-13-11
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21121003, KAKENHI-PROJECT-24370047
[Journal Article] Crystallographic and NMR evidence for flexibility in oligosaccharyltransferases and its catalytic significance2013
- Author(s)
  James Nyirenda, et al.
- Journal Title
  
  Structure
  
  Volume: 21 Issue: 1 Pages: 32-41
- DOI
  10.1016/j.str.2012.10.011
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23570139, KAKENHI-PROJECT-24370047, KAKENHI-PLANNED-21121003
[Journal Article] Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation2013
- Author(s)
  Matsumoto, S., Shimada, A., Nyirenda, J., Igura, M., Kawano, Y., Kohda, D.
- Journal Title
  
  Proc Natl Acad Sci U S A
  
  Volume: 110 Pages: 17868-17873
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Rapid identification of ligand-binding sites by using an assignment-free NMR approach2013
- Author(s)
  Kodama Y, Takeuchi K, Shimba N, Ishikawa K, Suzuki E, Shimada I, Takahashi H.
- Journal Title
  
  J Med Chem
  
  Volume: 56 Issue: 22 Pages: 9342-9350
- DOI
  10.1021/jm4014357
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21121001, KAKENHI-PLANNED-21121002, KAKENHI-PROJECT-23570146, KAKENHI-PUBLICLY-24102524, KAKENHI-PROJECT-24370048, KAKENHI-PUBLICLY-25121743
[Journal Article] Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases2013
- Author(s)
  Matsumoto, S., Shimada, A., Kohda, D.
- Journal Title
  
  BMC Struct Biol
  
  Volume: 13 Pages: 11-11
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Crystal structure of the C-terminal globular domain of oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 A resolution2012
- Author(s)
  Matsumoto, S., Igura, M., Nyirenda, J., Matsumoto, M., Yuzawa, S., Noda, N., Inagaki, F., Kohda, D.
- Journal Title
  
  Biochemistry
  
  Volume: 51 Pages: 4157-4166
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Ring A of nukacin ISK-1 : a lipid II-binding motif for type-A (II) lantibiotic2012
- Author(s)
  ISLAM M.R., et al
- Journal Title
  
  Journal of the American Chemical Society
  
  Volume: 134 Issue: 8 Pages: 3687-3690
- DOI
  10.1021/ja300007h
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-10F00099, KAKENHI-PROJECT-10J03407, KAKENHI-PROJECT-23380050
[Journal Article] Crystal structure of the C-terminal globular domain of oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75Å resolution.2012
- Author(s)
  Matsumoto, S., Igura, M., Nyirenda, J., Matsumoto. M, Yuzawa, S., Noda, N., Inagaki, F., Kohda, D.
- Journal Title
  
  Biochemistry
  
  Volume: 51 Issue: 20 Pages: 4157-4166
- DOI
  10.1021/bi300076u
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24370047, KAKENHI-PLANNED-21121003, KAKENHI-PUBLICLY-24113718
[Journal Article] Crystallographic snapshots of Tom20-mitochondrial presequence interactions with disulfide-stabilized peptides2011
- Author(s)
  Saitoh, T., Igura, M., Miyazaki, Y., Ose, T., Maita, N., Kohda, D.
- Journal Title
  
  Biochemistry
  
  Volume: 50 Pages: 5487-5496
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Rapid Identification of Protein-Protein Interfaces and Construction of Complex Model Based on Multiple Unassigned Signals By Using Time-sharing NMR Measurement2011
- Author(s)
  Yuya Kodama, Michael L.Reese, Nobuhisa Shimba, Volker Dotsch, Ei-ichiro Suzuki, Ichio Shimada, Hideo Takahashi
- Journal Title
  
  J.Struct.Biol.
  
  Volume: 174 Pages: 434-42
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21121001
[Journal Article] Quantitative assessment of the preferences for the amino acid residues flanking archaeal N-linked glycosylation sites2011
- Author(s)
  Igura, M., Kohda, D.
- Journal Title
  
  Glycobiology
  
  Volume: 21 Pages: 575-583
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] 共有結合を用いた平衡シフトによる過渡的タンパク質複合体からの構造情報の取得2011
- Author(s)
  神田大輔,齊藤貴士
- Journal Title
  
  生化学
  
  Volume: 83(10) Pages: 902-911
- NAID
  10029850124
- URL
  http://www.jbsoc.or.jp/seika/wp-content/uploads/2013/05/83-10-03.pdf
- Data Source
  KAKENHI-ORGANIZER-21121001
[Journal Article] Selective control of oligosaccharide transfer efficiency for the N-glycosylation sequon by a point mutation in oligosaccharyltransferase2011
- Author(s)
  Igura, M., Kohda, D.
- Journal Title
  
  J Biol Chem
  
  Volume: 286 Pages: 13255-13260
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] 共有結合を用いた平衡シフトによる過渡的タンパク質複合体からの構造情報の取得2011
- Author(s)
  神田大輔,齊藤貴士
- Journal Title
  
  生化学
  
  Volume: 第83巻第10号 Pages: 902-911
- NAID
  10029850124
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Comparative structural biology of eubacterial and archaeal oligosaccharyltransferases2010
- Author(s)
  Maita, N., Nyirenda, J., Igura, M., Kamishikiryo, J., Kohda, D.
- Journal Title
  
  J Biol Chem
  
  Volume: 285 Pages: 4941-4950
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Stalled replication forks : making ends meet for recognition and stabilization.2010
- Author(s)
  Masai H, Tanaka T, Kohda D.
- Journal Title
  
  Bioessays
  
  Volume: 32 Pages: 687-697
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Crystallographic and functional analyses of J-domain of JAC1 essential for chloroplast photorelocation movement in Arabidopsis thaliana2010
- Author(s)
  Takano, A., Suetsugu, N., Wada, M., Kohda, D.
- Journal Title
  
  Plant Cell Physiol
  
  Volume: 51 Pages: 1372-1376
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Structure and activity of JAC1 J-domain implicate the involvement of the cochaperone activity with HSC70 in chloroplast photorelocation movement2010
- Author(s)
  Suetsugu, N., Takano, A., Kohda, D., Wada, M.
- Journal Title
  
  Plant Signal Behav
  
  Volume: 5 Pages: 1602-1606
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Comparative Structural Biology of Eubacterial and Archaeal Oligosaccharyltransferases2010
- Author(s)
  N.Maita, J.Nyirenda, M.Igura, J.Kamishikiryo, D.Kohda
- Journal Title
  
  Journal of Biological Chemistry 285
  
  Pages: 4941-4950
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21121003
[Journal Article] Structure-guided identification of a new catalytic motif of oligosaccharyltransferase2008
- Author(s)
  M. Igura, N. Maita, J. Kamishikiryo, M. Yamada, T. Obita, K. Maenaka, D. Kohda
- Journal Title
  
  EMBO J 27
  
  Pages: 234-243
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Complete Covalent Structure of Nisin Q, New Natural Nisin Variant, Containing Post-Translationally Modified Amino Acids2008
- Author(s)
  M. Fukao, T. Obita, F. Yoneyama, D. Kohda, T. Zendo, J. Nakayama, K. Sonomoto
- Journal Title
  
  Biosci Biotechnol Biochem 72
  
  Pages: 1750-1755
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] ミトコンドリア行きシグナルを識別するためのソフトな分子認識2008
- Author(s)
  神田大輔
- Journal Title
  
  生化学第80巻第10号
  
  Pages: 888-896
- NAID
  10022594528
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Structure-guided identification of a new catalytic motif of oligosaccharyltransferase.2008
- Author(s)
  Igura M, Maita N, Kamishikiryo J, Yamada M, Obita T, Maenaka K, Kohda, D
- Journal Title
  
  EMBO J 27
  
  Pages: 234-243
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083101
[Journal Article] Structure-guided identification of a new catalytic motif of oligosaccharyltransferase2008
- Author(s)
  Igura M, Maita N, Kamishikiryo J, Yamada M, Obita T, Maenaka K, Kohda D
- Journal Title
  
  EMBO J 27
  
  Pages: 234-243
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Biophysical characterization of O-glycosylated CD99 recognition by paired Ig-like type 2 receptors2008
- Author(s)
  S. Tabata, K. Kuroki, J. Wang, M. Kajikawa, I. Shiratori, D. Kohda, H. Arase, K. Maenaka
- Journal Title
  
  J Biol Chem 283
  
  Pages: 8893-8893
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Crystal structure of measles virus hemagglutinin provides insight into effective vaccines.2007
- Author(s)
  T. Hashiguchi, M. Kajikawa, N. Maita, M. Takeda, K. Kuroki, K. Sasaki, D. Kohda, Y. Yanagi, *K. Maenaka
- Journal Title
  
  Proc. Natl. Acad. Sci. USA 104
  
  Pages: 19535-19540
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083101
[Journal Article] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states2007
- Author(s)
  Saitoh T, Igura M, Obita T, Ose T, Kojima R, Maenaka K, Endo T, Kohda D
- Journal Title
  
  EMBO J 26
  
  Pages: 4777-4787
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA2007
- Author(s)
  Sasaki K, Ose T, Okamoto N, Maenaka K, Tanaka T, Masai H, Saito M, Shirai T, Kohda D
- Journal Title
  
  EMBO J 26
  
  Pages: 2584-2593
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] "Structural basis of the 3'-end recognition of a leading strand in stalled DNAreplication forks by PriA."2007
- Author(s)
  Sasaki, K., Ose, T., Okamoto, N., Maenaka, K., Tanaka, T., Masai, H., Saito, M., Shirai, T.,and Kohda, D.
- Journal Title
  
  EMBO J. 26
  
  Pages: 2584-2593
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18657057
[Journal Article] New oligosaccharyltransferase assay method2007
- Author(s)
  Kohda D, Yamada M, Igura M, Kamishikiryo J, Maenaka K
- Journal Title
  
  Glycobiology 17
  
  Pages: 1175-1182
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] New oligosaccharyltransferase assay method2007
- Author(s)
  D., Kohda, et. al.
- Journal Title
  
  Glycobiology 17
  
  Pages: 1175-1182
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] "Escherichia coli PriA protein:Two modes of DNA binding and activation of ATP hydrolysis."2007
- Author(s)
  Tanaka, T., Mizukoshi, T., Sasaki, K., Kohda, D.,and Masai, H.
- Journal Title
  
  J.Biol.Chem. 282
  
  Pages: 19917-19927
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18657057
[Journal Article] Tom20 recognizes mitochondrial presequences through 5 dynamic equilibrium among multiple bound states.2007
- Author(s)
  T. Saitoh, M. Igura, T. Obita, T. Ose, R. Kojima, K. Maenaka, T. Endo, D. Kohda
- Journal Title
  
  EMBO J 26
  
  Pages: 777-4787
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083101
[Journal Article] Purification,crystallization and preliminary X-ray diffraction studies of the soluble domain of the oligosaccharyltransferase STT3 subunit from the thermophilic archaeon Pyrococcus furiosus2007
- Author(s)
  Igura M, Maita N, Obita T, Kamishikiryo J, Maenaka K, Kohda D
- Journal Title
  
  Acta Crystallogr Sect F Struct Biol Cryst Commun 63
  
  Pages: 798-801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d)2006
- Author(s)
  M. Shiroishi, K. Kuroki, L. Rasubala, K. Tsumoto, I. Kumagai, E. Kurimoto, K. Kato, D. Kohda, K. Maenaka
- Journal Title
  
  Proc. Natl. Acad. Sci. U S A. 103
  
  Pages: 16412-16417
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083101
[Journal Article] Crystallization and preliminary crystallographic analysis of the N-terminal domain of PriA from Escherica is coli.2006
- Author(s)
  K.Sasaki, T.Ose, T.Tanaka, T.Mizukoshi, T.Ishigaki, K.Maenaka, H.Masai, D.Kohda
- Journal Title
  
  Biochim. Biophys. Acta 1764
  
  Pages: 157-160
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Crystallization and preliminary crystallographic analysis of the N-terminal domain of PriA from Escherichia coli2006
- Author(s)
  Kohda, D., et al.
- Journal Title
  
  Biochim Biophys Acta 1764
  
  Pages: 157-160
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15310151
[Journal Article] Crystallization and preliminary crystallographic analysis of the N-terminal domain of PriA from Escherichia coli2006
- Author(s)
  Sasaki K, Ose T, Tanaka T, Mizukoshi T, Ishigaki T, Maenaka K, Masai H, Kohda D
- Journal Title
  
  Biochim Biophys Acta 1764
  
  Pages: 157-160
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site2005
- Author(s)
  Kohda, D., et al.
- Journal Title
  
  Biochem Biophys Res Commun 326
  
  Pages: 766-776
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15310151
[Journal Article] Crystallization and preliminary X-ray analysis of mitochondrial presequence receptor Tom20 in complexes with a presequence from aldehyde dehydrogenase2005
- Author(s)
  M.Igura, T.Ose, T.Obita, C.Sato, K.Maenaka, T.Endo, D.Kohda
- Journal Title
  
  Acta Crystography F61
  
  Pages: 514-517
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Crystallization and preliminary X-ray analysis of mitochondrial presequence receptor Tom20 in complexes with a presequence from aldehyde dehydrogenase2005
- Author(s)
  Igura M, Ose T, Obita T, Sato C, Maenaka K, Endo T, Kohda D
- Journal Title
  
  Acta Crystallogr Sect F Struct Biol Cryst Commun 61
  
  Pages: 514-517
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Journal Article] Peptide library approach with a disulfide tether to refine the Tom20 recognition motif in mitochondrial presequences2003
- Author(s)
  Obita, T, Muto, T, Endo, T, Kohda, D
- Journal Title
  
  J Mol Biol 328
  
  Pages: 495-504
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] 残基特異的LFER関係はポリペプチド鎖のスムーズな構造変化のための物理化学的要件である2022
- Author(s)
  神田大輔，林成一郎，藤浪大輔
- Organizer
  第６１回NMR討論会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] 残基特異的な熱力学・速度論解析が明らかにするスペクトリンSH3 ドメインの共同性の低いフォールディング2022
- Author(s)
  林成一郎，藤浪大輔，神田大輔
- Organizer
  第６０回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] アミノ酸残基レベルの熱力学・速度論解析が明らかにした自由エネルギー関係2022
- Author(s)
  藤浪大輔，林成一郎，神田大輔
- Organizer
  物性研短期研究会「理論タンパク質物性科学の最前線：理論と実験との密な協働」
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] 残基特異的QFER（自由エネルギー2 次関係）はスムーズな蛋白質折れ畳みを実現するコンシステンシー原理の数学的表現である2022
- Author(s)
  神田大輔，林成一郎，藤浪大輔
- Organizer
  第６０回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] 残基特異的な熱力学・速度論解析が明らかにするnukacin ISK-1 の構造変換機構2022
- Author(s)
  林成一郎，神田大輔
- Organizer
  第22回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] 残基特異的LFER 関係を使って蛋白質分子の構造変化の遷移状態を観る2022
- Author(s)
  神田大輔，林成一郎，藤浪大輔
- Organizer
  第22回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] 残基特異的な熱力学・速度論解析が明らかにする spectrin SH3ドメインのフォールディング機構2022
- Author(s)
  林成一郎，藤浪大輔，神田大輔
- Organizer
  第６１回NMR討論会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] NMRを用いたalpha-spectrin SH3ドメインのアミノ酸残基特異的な熱力学的解析2021
- Author(s)
  林成一郎，藤浪大輔，神田大輔
- Organizer
  第21回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] Residue-specific thermodynamic and kinetic analyses of slow polypeptide topological isomerization by NMR exchange spectroscopy2021
- Author(s)
  Seiichiro Hayashi, Daisuke Fujinami, Daisuke Kohda
- Organizer
  The ISMAR-APNMR-NMRSJ-SEST 2021 Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] スペクトリンSH3ドメインのアミノ酸残基特異的な熱力学・速度論的解析2021
- Author(s)
  林成一郎，藤浪大輔，神田大輔
- Organizer
  令和３年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-23K21298
[Presentation] Multiple partial recognitions in dynamic equilibrium in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands2019
- Author(s)
  Daisuke Kohda
- Organizer
  第42回日本分子生物学会年会，福岡
- Data Source
  KAKENHI-WRAPUP-19H05452
[Presentation] The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states: Thermodynamic analysis using the NMR signals as residue-specific probes2019
- Author(s)
  Daisuke Kohda
- Organizer
  Annual Taiwan Magnetic Resonance Society Meeting, Taipei
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-WRAPUP-19H05452
[Presentation] The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states2019
- Author(s)
  Daisuke Kohda
- Organizer
  8th Asia-Pacific NMR Symposium 2019, Singapore
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-WRAPUP-19H05452
[Presentation] Integrative Analysis Combining AFM, NMR, and EM Revealed Two-State Conformational Exchange of a Single-subunit Oligosaccharyltransferase from Archaeoglobus fulgidus2019
- Author(s)
  Yuki Kawasaki, Hirotaka Ariyama, Daisuke Fujinami, Hajime Motomura, Ashutosh Srivastava, Florence Tama, Daisuke Noshiro, Toshio Ando, Kouta Mayanagi, Daisuke Kohda
- Organizer
  Thermophiles 2019, Fukuoka
- Int'l Joint Research
- Data Source
  KAKENHI-WRAPUP-19H05452
[Presentation] Integrative approach combining electron microscopy and high-speed AFM revealed the dynamic conformational exchange of the oligosaccharyltransferase in lipid bilayers2018
- Author(s)
  Yuki Kawasaki, Kouta Mayanagi, Ashutosh Srivastava, Hirotaka Ariyama, Florence Tama, Toshio Ando, and Daisuke Kohda
- Organizer
  第13回研究所ネットワーク国際シンポジウム
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] The lantibiotic Nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states2018
- Author(s)
  Daisuke Fujinami, Abdullah-Al-Mahin, Khaled M. Elsayed, Jun-ichi Nagao, Takeshi Zendo, Kenji Sonomoto, and Daisuke Kohda
- Organizer
  XXVIIIth International Conference on Magnetic Resonance in Biological Systems (ICMRBS), アイルランド
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Creating crystal contact-free space in protein crystals makes the spatial distribution of a presequence peptide in the binding site of the mitochondrial presequence receptor, Tom20, visible2018
- Author(s)
  韓喜玲，嶋田睦，神田大輔
- Organizer
  第91回日本生化学会大会
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] promiscuous だが洗練されたタンパク質の分子認識（英語セッション）2018
- Author(s)
  塚崎智也，神田大輔（オーガナイザー）
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] Visualization of the spatial distribution of a presequence peptide in the binding site of the mitochondrial presequence receptor, Tom20, using crystal contact-free space created in protein crystals2018
- Author(s)
  韓喜玲，嶋田睦，神田大輔
- Organizer
  日本生化学会九州支部例会
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 生体高分子のインセル測定技術（英語セッション）2018
- Author(s)
  西田紀貴，神田大輔（オーガナイザー）
- Organizer
  第18回日本蛋白質科学会年会
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] Integrative Structural Biology Approach to Understand the Structural and Dynamic Basis of Asn-Glycosylation2018
- Author(s)
  Daisuke Kohda
- Organizer
  The Japanese Biochemical Society Bio-Frontier Symposium, International symposium on ER stress, glycosylation, homeostasis and diseases (埼玉）
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] NMRによる抗菌ペプチドnukacin ISK-1 の溶液構造決定と熱力学的解析2018
- Author(s)
  藤浪大輔，Abdullah Al Mahin，Khaled M Elsayed，永尾潤ー，善藤　威史，園元謙二，神田大輔
- Organizer
  第57回NMR討論会
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Integrative Structural Biology Approach to Understand the Structural and Dynamic Basis of Asn-Glycosylation2017
- Author(s)
  Daisuke Kohda
- Organizer
  The 10th Anniversary of Protein & Peptide Conference (PepCon-2017)
- Place of Presentation
  Fukuoka
- Year and Date
  2017-03-22
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 拡大を続けるグライコサイエンス：基礎・応用生物学から健康・医療まで（英語と日本語セッション）2017
- Author(s)
  神田大輔（世話人代表）
- Organizer
  第15回糖鎖科学コンソーシアムシンポジウム（九州大学）
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] 生体膜模倣環境としての新しい界面活性剤，リポソーム，ナノディスクの利用（英語セッション）2017
- Author(s)
  塚崎智也，神田大輔（オーガナイザー）
- Organizer
  第55回日本生物物理学会年会（熊本大学）
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] アスパラギン結合型糖鎖転移反応の理解のための統合的構造生物学アプローチ2017
- Author(s)
  神田大輔
- Organizer
  第15回糖鎖科学コンソーシアム（JCGG）シンポジウム（福岡）
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Integrative Structural Biology Approach to Understand the Structural and Dynamic Basis of Asn-Glycosylation2017
- Author(s)
  Daisuke Kohda
- Organizer
  2nd Joint International Symposium of NSRRC and IPR (Hsinchu, Taiwan)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] クライオ電子顕微鏡の先端技術2017
- Author(s)
  神田大輔（主催者）
- Organizer
  第8回構造生物学に関する先端技術講演会
- Place of Presentation
  九州大学馬出病院キャンパス
- Year and Date
  2017-01-18
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] 蛋白質のＮ型糖鎖転移反応理解のための統合的構造生物学アプローチ2017
- Author(s)
  神田大輔
- Organizer
  第44回生体分子科学討論会(秋田）
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 技術開発が牽引する新しいライフサイエンス研究（英語セッション）2017
- Author(s)
  西田紀貴，神田大輔（オーガナイザー）
- Organizer
  第17回日本蛋白質科学会年会（仙台国際センター）
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] Archaeal Glycobiology by MS and NMR2017
- Author(s)
  Yuya Taguchi, Daisuke Fujinami, and 〇Daisuke Kohda
- Organizer
  2017 Taiwan-Japan Biomedical Symposium on Magnetic Resonance (Tainan, Taiwan)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 技術開発が牽引する新しいライフサイエンス研究2016
- Author(s)
  神田大輔，塚崎智也（オーガナイザー）
- Organizer
  第16回日本蛋白質科学会
- Place of Presentation
  福岡国際会議場（福岡市）
- Year and Date
  2016-06-07
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] Integrative structural biology approach to decipher the molecular mechanism of Asn-glycosylation2016
- Author(s)
  Daisuke Kohda
- Organizer
  The 42nd Naito Conference
- Place of Presentation
  Sapporo
- Year and Date
  2016-10-07
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Single particle analysis of DNA replication fork complex2016
- Author(s)
  Kouta Mayanagi, Sonoko Ishino, Mika Takafuji, Kaoru Mitsuoka, Tsuyoshi Shirai, Shinichi Kiyonari, Hirokazu Nishida, Daisuke Kohda, Kosuke Morikawa, Yoshizumi Ishino
- Organizer
  10th International 3R (DNA, Replication, Recombination, and Repair) Symposium
- Place of Presentation
  ホテル一畑（松江市）
- Year and Date
  2016-11-16
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] アスパラギン結合型糖鎖転移反応の理解のための統合的構造生物学アプローチ2016
- Author(s)
  神田大輔
- Organizer
  第55回NMR討論会
- Place of Presentation
  広島
- Year and Date
  2016-11-18
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Live protein molecules at work, a special session in memory of Prof. Fuyuhiko Inagaki2016
- Author(s)
  神田大輔，C. Redfield（座長と口演）
- Organizer
  27th International Conference on Magnetic Resonance in Biological Systems
- Place of Presentation
  京都国際会議場（京都市）
- Year and Date
  2016-08-25
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] “結晶コンタクトフリー空間“を利用する新しい結晶解析技術を用いて蛋白質分子の内部運動の空間分布を視覚化する2015
- Author(s)
  神田大輔
- Organizer
  第15回日本蛋白質科学会
- Place of Presentation
  徳島市
- Year and Date
  2015-06-26
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation2015
- Author(s)
  Daisuke Kohda
- Organizer
  Progress 100: Kyushu-U and Stanford-U Joint Research and Education Program, First Symposium
- Place of Presentation
  福岡
- Year and Date
  2015-03-16
- Invited
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Integrative structural biology approach to understand the structural and dynamical basis of Asn-glycosylation2015
- Author(s)
  Daisuke Kohda
- Organizer
  the 6th Asia-Pacific NMR Symposium (APNMR6)
- Place of Presentation
  香港科技大学
- Year and Date
  2015-08-13
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 動的生命科学を拓く新発想測定技術2015
- Author(s)
  神田大輔
- Organizer
  第25回九州大学生医研国際シンポジウム
- Place of Presentation
  福岡市　九州大学
- Year and Date
  2015-11-13
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] 動的生命科学を拓く新発想測定技術2015
- Author(s)
  神田大輔，西田紀貴
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢市　金沢大学
- Year and Date
  2015-09-14
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] 動的生命科学を拓く新発想測定技術2015
- Author(s)
  神田大輔，西田紀貴
- Organizer
  第15回日本蛋白質科学会
- Place of Presentation
  徳島市　あわぎんホール
- Year and Date
  2015-06-26
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] オリゴ糖転移酵素の結晶構造解析が明らかにするアスパラギン糖鎖修飾反応のダイナミクス2015
- Author(s)
  神田大輔
- Organizer
  大阪大学蛋白研セミナー
- Place of Presentation
  大阪大学
- Year and Date
  2015-08-28
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 蛋白質のアスパラギン残基に糖鎖を転移するオリゴ糖転移酵素の構造生物学－超好熱性古細菌由来の蛋白質の安定性を最大限に活かす－2015
- Author(s)
  神田大輔
- Organizer
  平成27年度日本生化学会九州支部例会
- Place of Presentation
  九州大学
- Year and Date
  2015-05-16
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Application of “crystal contact-free space” to the study of protein dynamics2015
- Author(s)
  Daisuke Kohda
- Organizer
  The 25th Hot Spring Harbor International Symposium
- Place of Presentation
  九州大学
- Year and Date
  2015-11-13
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 蛋白質結晶中に隙間を創り出す新しいＸ線結晶解析を用いて蛋白質分子内部の動きを観る2015
- Author(s)
  神田大輔
- Organizer
  日本生物物理学会九州支部・熊本大学イメージングセミナー
- Place of Presentation
  熊本大学
- Year and Date
  2015-05-07
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] 新学術領域動的構造生命の概要2015
- Author(s)
  神田大輔
- Organizer
  生命分子ダイナミクスの探求を目指す次世代NMR研究会
- Place of Presentation
  岡崎統合バイオサイエンスセンター（愛知）
- Year and Date
  2015-01-13
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] Crystal contact-free space for analyzing spatial distribution of protein internal motions2015
- Author(s)
  Daisuke Kohda
- Organizer
  第53回日本生物物理学会年会シンポジウム
- Place of Presentation
  金沢大学
- Year and Date
  2015-09-13
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] タンパク質の膜透過と共役したオリゴ糖転移酵素の反応様式の解明2014
- Author(s)
  山崎貴大, 神田大輔
- Organizer
  第87回日本生化学会大会
- Place of Presentation
  京都
- Year and Date
  2014-10-17
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Crystal structures of oligosaccharyltransferase provide insights into the sequon recognition and activation of N-linked protein glycosylation2014
- Author(s)
  Daisuke Kohda
- Organizer
  第87回日本生化学会大会
- Place of Presentation
  京都
- Year and Date
  2014-10-15
- Invited
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] 動的生命科学を拓く新発想測定技術ータンパク質が動作する姿を活写するー2014
- Author(s)
  神田大輔
- Organizer
  キックオフミーティング
- Place of Presentation
  九州大学病院キャンパス（福岡）
- Year and Date
  2014-10-03
- Data Source
  KAKENHI-ORGANIZER-26119001
[Presentation] 古細菌由来オリゴ糖転移酵素の基質ペプチド複合体の結晶構造2014
- Author(s)
  松本俊介, 嶋田睦, 遠藤斗志也, 神田大輔
- Organizer
  第87回日本生化学会大会
- Place of Presentation
  京都
- Year and Date
  2014-10-16
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Insights into the molecular mode of action of nukacin ISK-12014
- Author(s)
  Abdullah-Al-Mahin, Urmi Roy, Daisuke Fujinami, Mohammad Riazul Islam, Sabrina Momin, Jun-ichi Nagao, Hiroshi Iida, Takeshi Zendo, Jiro Nakayama, Daisuke Kohda and Kenji Sonomoto
- Organizer
  第66回日本生物工学会大会（2014）
- Place of Presentation
  札幌国際会議場（札幌）
- Year and Date
  2014-09-10
- Data Source
  KAKENHI-PROJECT-26292040
[Presentation] Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation2014
- Author(s)
  Shunsuke Matsumoto, Atsushi Shimada, Takahiro Yamasaki, Daisuke Kohda
- Organizer
  27th International Carbohydrate Symposium
- Place of Presentation
  Bangalore, India
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Crystal structure of an archaeal oligosaccharyltransferase, a membrane enzyme that catalyzes the transfer of sugar chains to asparagine residues of glycoproteins2013
- Author(s)
  Daisuke Kohda
- Organizer
  Post-GCOE Symposium & Retreat in Singapore with NUS and TLL
- Place of Presentation
  Singapore
- Year and Date
  2013-03-04
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] タンパク質結晶中に意図的に創り出した空間を使って,タンパク質に結合した状態のリガンドの大振幅運動を解析する2013
- Author(s)
  神田大輔
- Organizer
  第51回日本生物物理学会年会ワークショップ「過渡的複合体が関わる生命現象の統合的理解」
- Place of Presentation
  京都府京都市
- Year and Date
  2013-10-29
- Data Source
  KAKENHI-ORGANIZER-21121001
[Presentation] Intentional creation of crystal-contact free space for monitoring large amplitude motions of proteins and ligands in protein crystals2012
- Author(s)
  Daisuke Kohda
- Organizer
  第８５回日本生化学会年会
- Place of Presentation
  福岡
- Year and Date
  2012-12-14
- Invited
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Structural biology of the N-glycosylation reaction2012
- Author(s)
  Daisuke Kohda
- Organizer
  The 20th Anniversary of the Mizutani Foundation for Glycosciences
- Place of Presentation
  Tokyo, Japan(招待講演)
- Year and Date
  2012-11-19
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] 共有結合を用いた平衡シフトによる過渡的タンパク質複合体の安定化とその応用2011
- Author(s)
  神田大輔
- Organizer
  新学術領域研究「過渡的複合体」公開シンポジウム
- Place of Presentation
  東京大学薬学部東京
- Year and Date
  2011-07-21
- Data Source
  KAKENHI-ORGANIZER-21121001
[Presentation] 共有結合を用いた平衡シフトによる過渡的タンパク質複合体の安定化とその応用2011
- Author(s)
  神田大輔
- Organizer
  大阪大学蛋白質研究所セミナー
- Place of Presentation
  大阪(招待講演)
- Year and Date
  2011-07-28
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Comparative Structural Biology of Oligosaccharyltransferases2011
- Author(s)
  Daisuke Kohda
- Organizer
  The 71st Okazaki Conference
- Place of Presentation
  岡崎(招待講演)
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Stabilization and Structure Analysis of Mitochondrial Tom20-Presequence Complexes2011
- Author(s)
  T Saitoh, K Izumi, Y Miyazaki, D Kohda
- Organizer
  The 7th Global COE International Symposium, the 6th Young Investigators Forum
- Place of Presentation
  Bintan Island, Indonesia
- Year and Date
  2011-02-11
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] A combined NMR and crystallography approach for analyzing the promiscuous recognition of peptidic ligands by proteins2011
- Author(s)
  Daisuke Kohda
- Organizer
  The 4th APNMR Symposium
- Place of Presentation
  北京,China(招待講演)
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Crystallographic and NMR evidence for flexibility in the C-terminal globular domain of oligosaccharyltransferases and its catalytic significance2011
- Author(s)
  Daisuke Kohda
- Organizer
  The 10th Global COE International Symposium on Biochemistry and Cell Biology
- Place of Presentation
  シンガポール,singapore
- Year and Date
  2011-12-22
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Comparative Structural Biology of Oligosaccharyltransferases2011
- Author(s)
  Daisuke Kohda
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  横浜(招待講演)
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Comparative structural biology of archaeal and eubacterial oligosaccharyl transferases2011
- Author(s)
  Daisuke Kohda
- Organizer
  IX European Symposium of The Protein Society
- Place of Presentation
  ストックホルム,Sweden(招待講演)
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] 準安定な分子複合体から構造情報を得るための新戦略2010
- Author(s)
  神田大輔
- Organizer
  第10回日本蛋白質科学会年会ワークショップ
- Place of Presentation
  札幌
- Year and Date
  2010-06-16
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states - Complex stabilization with molecular tethering and stiffening2010
- Author(s)
  Daisuke Kohda
- Organizer
  The 5th Global COE International Symposium Cell Cycle and Differentiation
- Place of Presentation
  Singapore
- Year and Date
  2010-02-24
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] 準安定な分子複合体から構造情報を得るための新戦略2010
- Author(s)
  神田大輔
- Organizer
  第10回日本蛋白質科学会年会ワークショップ「過渡的複合体の視点から生命現象を捉えなおす」
- Place of Presentation
  北海道札幌市
- Year and Date
  2010-06-16
- Data Source
  KAKENHI-ORGANIZER-21121001
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states - Complex stabilization with molecular tethering and stiffening2009
- Author(s)
  Daisuke Kohda
- Organizer
  the 3rd Asia-Pacific NMR Symposium
- Place of Presentation
  Jeju Island, Korea
- Year and Date
  2009-10-28
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states2009
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral) 蛋白質立体構造解析NEDO 特別講座国際シンポジウム2009
- Place of Presentation
  東京
- Year and Date
  2009-01-26
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states2009
- Author(s)
  Daisuke Kohda
- Organizer
  International Symposium on Molecular Soft Interactions in Biological Systems
- Place of Presentation
  Osaka
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states - Complex stabilization with a molecular tether - (invited,oral)2009
- Author(s)
  Daisuke Kohda
- Organizer
  International Symposium on Molecular Soft Interactions in Biological Systems Organized by The Priority Area ゛Membrane Interface゛
- Place of Presentation
  Osaka
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Tom20 recognizes mitochondrial presequences through dynamic equilibrium among multiple bound states2009
- Author(s)
  Daisuke Kohda
- Organizer
  蛋白質立体構造解析NEDO特別講座国際シンポジウム2009
- Place of Presentation
  東京
- Year and Date
  2009-01-26
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Structure-guided identification of a new catalytic motif of oligosaccharyltransferase2008
- Author(s)
  Daisuke Kohda
- Organizer
  Fukuoka Symposium on Molecular Soft Interactions at Biomembrane Interface
- Place of Presentation
  Fukuoka
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] 「アスパラギン結合型糖鎖修飾を決定するオリゴ糖転移酵素の構造生化学」(シンポジウム口演)2007
- Author(s)
  神田大輔
- Organizer
  第27回日本糖質学会年会
- Place of Presentation
  福岡
- Year and Date
  2007-08-02
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Relaxation study reveals a dual-mode interaction mechanism for mitochondrial presequence recognition by Tom202007
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral)International Workshop on Perspectives on stable isotope aided NMR methods for protein structural analysis
- Place of Presentation
  Osaka
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Recognize not to discriminate : mechanism of nonselective base recognition of 3'-terminus of DNA by PriA protein2006
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral)The 2nd Sapporo Conference 2006 ; New Trend in Structural Biology
- Place of Presentation
  Sapporo
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] 「ゆるい相互作用をX線結晶解析とNMRで見る」(ワークショップ口演)2006
- Author(s)
  神田大輔
- Organizer
  第6回日本蛋白質科学会
- Place of Presentation
  京都
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Cracking of the targeting signal embedded in mitochondrial presequences2005
- Author(s)
  Daisuke Kohda
- Organizer
  XX Congress of the International Union of Crystallography
- Place of Presentation
  Florence, Italy
- Data Source
  KAKENHI-PROJECT-15083101
[Presentation] <ゆるい>相互作用に対する構造生物学アプローチ2005
- Author(s)
  神田大輔
- Organizer
  よこはまNMR構造生物学研究会第27回ワークショップ「細胞シグナリングの構造生物学」
- Place of Presentation
  横浜
- Year and Date
  2005-09-21
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Cracking of the targeting signal embedded in mitochondrial presequences2005
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral)XX Congress of the International Union of Crystallography Florence
- Place of Presentation
  Italy
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] ミトコンドリアへの標的シグナルを構造の観点から解読する2004
- Author(s)
  神田大輔
- Organizer
  2004蛋白研セミナー「生体系NMRにおける技術革新」
- Place of Presentation
  大阪
- Year and Date
  2004-11-19
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Cracking of the targeting signal embedded in mitochondrial presequences by NMR and crystallography2004
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral)UK-Japan Structural Genomics Conference UK/Japan Symposium
- Place of Presentation
  Oxford UK
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] ミトコンドリアへの標的シグナルを構造の観点から解読する2004
- Author(s)
  神田大輔
- Organizer
  第26回生体膜と薬物の相互作用シンポジウム
- Place of Presentation
  東京
- Year and Date
  2004-11-25
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Disulfide bond tethering approach for the study of molecular interactions2004
- Author(s)
  Daisuke Kohda
- Organizer
  特定領域研究「膜インタフェイス」第2回公開シンポジウムMolecular Soft Interactions at Biomembrane Interface
- Place of Presentation
  大阪
- Year and Date
  2004-08-04
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Cracking of the targeting signal embedded in mitochondrial presequences by NMR and crystallography2004
- Author(s)
  Daisuke Kohda
- Organizer
  (invited, oral)CREST internationalsymposium, Frontier of Biological NMR Spectroscopy
- Place of Presentation
  OSAKA
- Data Source
  KAKENHI-PROJECT-15083205
[Presentation] Structural elucidation of N-linked oligosaccharides of hyperthermophilic archaea
- Author(s)
  Daisuke Fujinami, Masaki Matsumoto, Daisuke Kohda
- Organizer
  International Symposium between Kyushu U. Post Global COE and School of Biomedical Sciences, Monash U.
- Place of Presentation
  Melbourne, Australia
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Structural and dynamic basis for mitochondrial presequence recognition by Tom20
- Author(s)
  Daisuke Kohda
- Organizer
  ISN 2014 Special Neurochemistry Conference
- Place of Presentation
  東京
- Year and Date
  2014-09-20 – 2014-09-22
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Intentional crystal-contact-free space to observe the large amplitude motions of ligands by X-ray crystallography
- Author(s)
  Rei Matsuoka, Daisuke Kohda
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  兵庫
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation
- Author(s)
  Daisuke Kohda
- Organizer
  2014 SFG & JSCR joint annual meeting
- Place of Presentation
  Hawaii, USA
- Year and Date
  2014-11-16 – 2014-11-19
- Invited
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] 蛋白質結晶中に創り出した隙間を利用して分子の動きを観るための新しいX線結晶解析
- Author(s)
  松岡礼，神田大輔
- Organizer
  第13回日本蛋白質科学会年会
- Place of Presentation
  鳥取
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] 蛋白質結晶中に創り出した隙間を利用して分子の動きを観るための新しいX線結晶解析
- Author(s)
  松岡礼，神田大輔
- Organizer
  SPring-8萌芽的研究課題ワークショップ
- Place of Presentation
  東京
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] 超好熱性古細菌由来N結合型糖鎖の化学構造決定
- Author(s)
  藤浪大輔，ジェイムスニレンダ，神田大輔
- Organizer
  第86回日本生化学会大会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] X線結晶解析から分子の動的情報を得るための方法
- Author(s)
  松岡礼, 小室靖明, 杉田有治, 神田大輔
- Organizer
  立体視プロジェクションシステムを使った分子科学研究講演会
- Place of Presentation
  飯塚，福岡
- Year and Date
  2014-12-05 – 2014-12-06
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Intentional creation of crystal-contact free space for monitoring large amplitude motions of ligands in protein crystals
- Author(s)
  Daisuke Kohda
- Organizer
  第51回日本生物物理学会
- Place of Presentation
  第51回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Intentional crystal-contact-free space in protein crystal
- Author(s)
  Rei Matsuoka, Yasuaki Komuro, Yuji Sugita, Daisuke Kohda
- Organizer
  23rd congress and general assembly of the international union of crystallography (IUCr2014)
- Place of Presentation
  Montreal
- Year and Date
  2014-08-05 – 2014-08-12
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Unraveling the blueprint of the molecular mode of action of nukacin ISK-1, a type-A(II) lantibiotic
- Author(s)
  Abdullah-Al-Mahin, Urmi Roy, Daisuke Fujinami, Mohammad Riazul Islam, Sabrina Momin, Jun-ichi Nagao, Hiroshi Iida, Takeshi Zendo, Jiro Nakayama, Daisuke Kohda and Kenji Sonomoto
- Organizer
  4th International Symposium on Antimicrobial Peptides
- Place of Presentation
  Lorient（フランス共和国）
- Year and Date
  2014-06-04 – 2014-06-06
- Data Source
  KAKENHI-PROJECT-26292040
[Presentation] 超好熱性古細菌由来のオリゴ糖転移酵素の基質となるオリゴ糖鎖の化学構造決定と相互作用解析
- Author(s)
  藤浪大輔，神田大輔
- Organizer
  第52回ＮＭＲ討論会
- Place of Presentation
  金沢
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] 古細菌型オリゴ糖転移酵素によるN型糖鎖修飾の構造基盤の解明
- Author(s)
  松本俊介, 嶋田睦, ジェイムスニレンダ, 井倉真由美, 河野能顕, 神田大輔
- Organizer
  第86回日本生化学会大会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] 超好熱性古細菌由来N結合型オリゴ糖鎖の化学構造決定
- Author(s)
  藤浪大輔，James Nyirenda，神田大輔
- Organizer
  第14回日本蛋白質科学会年会
- Place of Presentation
  横浜
- Year and Date
  2014-06-25 – 2014-06-27
- Data Source
  KAKENHI-PROJECT-24370047
[Presentation] Structural and dynamic basis for mitochondrial presequence recognition by Tom20
- Author(s)
  Rei Matsuoka, Daisuke Kohda
- Organizer
  The 5th Japan-Taiwan bilateral NMR symposium
- Place of Presentation
  札幌
- Year and Date
  2014-09-29 – 2014-09-30
- Invited
- Data Source
  KAKENHI-PLANNED-26119002
[Presentation] Intentional crystal-contact-free space to observe the large amplitude motions of ligands by X-ray crystallography
- Author(s)
  Rei Matsuoka, Daisuke Kohda
- Organizer
  International Symposium between Kyushu U. Post Global COE and School of Biomedical Sciences, Monash U.
- Place of Presentation
  Melbourne, Australia
- Data Source
  KAKENHI-PLANNED-21121003
[Presentation] Intentional creation of crystal-contact free space for analyzing large amplitude motions in protein crystals
- Author(s)
  Daisuke Kohda
- Organizer
  International Symposium between Kyushu U. Post Global COE and School of Biomedical Sciences, Monash U.
- Place of Presentation
  Melbourne, Australia
- Data Source
  KAKENHI-PLANNED-21121003

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# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
52. OBITA Takayuki

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
53. 小林直宏

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
54. 児嶋長次郎

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
55. ISLAM M.R.

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
56. 園元兼二

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

KODA Daisuke 神田 大輔

KOHDA Daisuke 神田 大輔

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Residue-specific Linear Free Energy Relationship is the physicochemical basis of protein foldingPrincipal Investigator

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「動的構造生命科学を拓く新発想測定技術」の成果取りまとめを目指した組織活動Principal Investigator

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Support activities aimed at international network formation in the research area of dynamic structural life sciencesPrincipal Investigator

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New measurement techniques for visualizing live protein molecules at workPrincipal Investigator

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Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein moleculesPrincipal Investigator

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Novel measurement techniques for visualizing 'live' protein molecules at workArea Organizer

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Structural basis for N-linked glycosylation site occupancyPrincipal Investigator

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Development of experimental techniques for the investigation of transient molecular protein complexesPrincipal Investigator

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SH3ドメインに高親和性・特異的ペプチドの立体構造に基づいたライブラリデザインPrincipal Investigator

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KODA Daisuke 神田大輔

KOHDA Daisuke 神田大輔