Ito Takehiko 伊藤武彦

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ITOH Takehiko 伊藤武彦

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Researcher Number	90501106
Other IDs
Affiliation (Current)	2025: 東京科学大学, 生命理工学院, 教授
Affiliation (based on the past Project Information) *help	2016 – 2024: 東京工業大学, 生命理工学院, 教授 2019: 東京工業大学, 生命理工学研究科, 教授 2015: 東京工業大学, 大学院生命理工学研究科, 教授 2012 – 2015: 東京工業大学, 生命理工学研究科, 教授 2014: 東京工業大学, 大学院・生命理工学研究科, 教授 … More 2009 – 2012: 東京工業大学, 大学院・生命理工学研究科, 教授 2010 – 2011: 東京工業大学, 生命理工, 教授 2009: 東京工業大学, バイオフロンティアセンター, 特任教授 Less
Review Section/Research Field	Principal Investigator Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Basic Section 43050:Genome biology-related / Genome biology / Biological Sciences / Genome biology / Genetics/Genome dynamics Except Principal Investigator Biological Sciences / Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Basic Section 17050:Biogeosciences-related / Broad Section I … More / Medium-sized Section 63:Environmental analyses and evaluation and related fields / Basic Section 45010:Genetics-related / System genome science / Bacteriology (including mycology) / Ecology/Environment / Genome biology / Applied genomics / Genome biology / 基礎ゲノム科学 Less
Keywords	Principal Investigator ゲノムアセンブル / ゲノムアセンブラ / ゲノム情報 / ゲノム情報解析 / バイオインフォマティクス / メタゲノム / Hi-C法 / 遺伝子予測 / アセンブラ / 染色体動態 … More / 多倍体ゲノム / de bruijnグラフ / de bruijn グラフ / GWAS / k-mer解析 / アセンブル / 相同組み替え / 相同組み換え / NGS / 相同組換え / Hi-C / メタゲノム解析 / HiC法 / ビンニング / HI-C法 / 遺伝子配列構築 / RNA-seq / 遺伝子構造予測 / ゲノム解析 / ハプロタイプ / ゲノム構築 / 次世代シークエンサー / ヘテロ接合性 / 染色体立体構造解析 / 染色体構造 / エピゲノム / 染色体高次構造 / 新型シークエンサー / 新型シークエンサ / ChIP-seq法 / ChIP-seq解析 … More Except Principal Investigator ゲノム / エピゲノム / 染色体構造 / ChIP-seq / メタゲノム / 染色体動態 / ゲノム構造 / ゲノム解析 / 染色体構築 / 発現制御 / ゲノム編集 / 微生物 / 進化 / リシーケンシング / 次世代DNAシーケンサー / バイオインフォマティクス / 次世代シーケンサー / メタゲノム解析 / 染色体機能 / 転写 / 相同組換え / ゲノムアダプテーション / 染色体 / 熱ショックタンパク質 / 遺伝子発現比較 / ゲノム比較 / 透明ナマズ / 海洋堆積物 / 微生物群集構造 / 16S RNA / 微生物生態 / 極限環境 / DNA / 16S rRNA / 適応 / 海底下堆積物 / 適応・進化 / 微生物群集 / 堆積物 / 海底下生命圏 / Aurora Bキナーゼ / がん幹細胞 / Auroraキナーゼ / 異数体 / クロマチン高次構造 / 染色体不安定性 / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / シングルセル解析 / オミックス解析 / 核内受容体 / 生理活性 / 生体分子 / 蛋白質 / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / 1細胞解析 / RNA-Seq / 新規ゲノム配列決定 / SOX9 / XO / トゲネズミ / 生体生命情報学 / 染色体構築原理 / 生態生命情報学 / モデル化 / データベース / 数理解析 / 生命情報 / ゲノム情報 / 染色体高次構造 / プラスミド / 銅イオン / Cryptococcus 酵母 / ウラシル要求性 / 酵母 / Cryptococcus / モデル生物 / 分子生物学ツール / 銅耐性 / 分子生物学 / 形質転換 / Cryptococcus酵母 / 遺伝子 / 集団構造 / 多様性 / O157 / 病原性大腸菌 / 細菌 / 系統解析 / 大腸菌O157 / HUS / 腸管出血性大腸菌O157 / 感染症 / 疫学 / 腸管出血性大腸菌 / 木質分解 / セルラーゼ / 腸内微生物群集 / 昆虫 / セルロース / 原生生物 / 腸内微生物 / 共生 / シロアリ / 次世代DNAシーケンサ / インフォームドコンセント / GWAS / 個人ゲノム / de novo配列決定 / RNA-seq / 全ゲノム解析 / 新規変異 / 個体ゲノム / ゲノム科学 / ゲノム変異 / ゲノム解析技術 / 次世代代シーケンサー / polymicrobial diseases / 難培養細菌 / 比較ゲノム / ウシ趾乳頭腫症 / polymicrobial disease / 染色体情報 / ChIP-seq解析 / 染色体可視化 / SMCタンパク / タンパクプロファイル解析 / 次世代シークエンサー / 遺伝 / ストレス / リプログラミング / 受精卵 / 初期胚発生 / クロマチンダイナミクス / リモデリング / 発生生物学 / シナプトネマ複合体 / 組換え / 環境ストレス / 生殖細胞 / 減数分裂 / 染色体適応 / 染色体複製 / 染色体凝縮 / 染色体分配 / DNAチップ / 脱アセチル化 / アセチル化修飾 / コヒーシン病 / 転写制御 / 染色体モデル / コヒーシン / ChIP-chip Less

近縁ナマズ２種のゲノム比較に基づく体組織の高度な透明化に関わる遺伝子基盤
- Principal Investigator
  
  二階堂雅人
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  Tokyo Institute of Technology
Study of nuclear receptors and repeat sequences to reveal the basis of prenatal neurological effects of environmental chemicals
- Principal Investigator
  
  松島綾美
- Project Period (FY)
  2023 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 63:Environmental analyses and evaluation and related fields
- Research Institution
  Kyushu University
Pore-Cデータを活用した多倍体ゲノムアセンブル手法の開発Principal Investigator
- Principal Investigator
  
  伊藤武彦
- Project Period (FY)
  2023 – 2024
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Tokyo Institute of Technology
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
Plastic regulation of chromosome dynamics in cancer
- Principal Investigator
  
  広田亨
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section I
- Research Institution
  Japanese Foundation for Cancer Research
Development of genome assembler for long-reads using de bruign graph algorithmPrincipal Investigator
- Principal Investigator
  
  伊藤武彦
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Institute of Science Tokyo
Microbial evolution below the seafloor
- Principal Investigator
  
  星野辰彦
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 17050:Biogeosciences-related
- Research Institution
  Japan Agency for Marine-Earth Science and Technology
Development of a k-mer-based GWAS method for metagenomic analysisPrincipal Investigator
- Principal Investigator
  
  Itoh Takehiko
- Project Period (FY)
  2021 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Tokyo Institute of Technology
Development of an algorithm for determining the location of homologous recombination sites from NGS data and analysis of the relationship with genetic informationPrincipal Investigator
- Principal Investigator
  
  Takehiko Itoh
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Tokyo Institute of Technology
A novel sex-determining mechanism in the mammalian species lacking SRY
- Principal Investigator
  
  Kuroiwa Asato
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 45010:Genetics-related
- Research Institution
  Hokkaido University
Development of a metagenomic analysis method that enables whole-genome construction from metagenome using the Hi-C methodPrincipal Investigator
- Principal Investigator
  
  Itoh Takehiko
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Tokyo Institute of Technology
Development of haplotype phased genome assemblerPrincipal Investigator
- Principal Investigator
  
  Itoh Takehiko
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genome biology
- Research Institution
  Tokyo Institute of Technology
Deciphering the mechanism of acquisition and evolution of symbiotic microbes in the termite gut
- Principal Investigator
  
  Hongoh Yuichi
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Ecology/Environment
- Research Institution
  Tokyo Institute of Technology
Nation-wide spatio-temporal phylogenomics of E. coli O157 and search for high risk O157 lineages
- Principal Investigator
  
  Hayashi Tetsuya
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Kyushu University
Development of novel RNA-seq and assemble method for gene structure annotationPrincipal Investigator
- Principal Investigator
  
  ITOH Takehiko
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Genome biology
- Research Institution
  Tokyo Institute of Technology
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Computational reconstruction of the higher-order structure of chromosomes and linkage analysis between chromosome structure and phenotypePrincipal Investigator
- Principal Investigator
  
  Itoh Takehiko
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
Molecular mechanism of Cryptococcus liquefaciens N6 strain
- Principal Investigator
  
  Iwasaki Hiroshi
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  System genome science
- Research Institution
  Tokyo Institute of Technology
Chromosome Orchestration System
- Principal Investigator
  
  Shirahige Katsuhiko
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of the integrated technologies to analyze genomic bases of individuality
- Principal Investigator
  
  Fujiyama Asao
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Genome biology
- Research Institution
  National Institute of Genetics
Development of denovo genome/gene assembler for highly heterozygous samples from NGS sequence dataPrincipal Investigator
- Principal Investigator
  
  ITOH TAKEHIKO
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genome biology
- Research Institution
  Tokyo Institute of Technology
Metagenome analysis of polymicrobial diseases and its application to clinical fields
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied genomics
- Research Institution
  University of Miyazaki
Systematic understanding of genome adaptation
- Principal Investigator
  
  SHINOHARA Akira
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
Understanding the "genome adaptation" in fertilized embryo
- Principal Investigator
  
  OKADA Yuki
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Development of bioinformatics platform for analyzing chromosome dynamics and comparative genomics.Principal Investigator
- Principal Investigator
  
  ITOH TAKEHIKO
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
A novel approach for the understanding of basic structure and behavior of human chromosomes
- Principal Investigator
  
  SHIRAHIGE Katsuhiko
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  Genome biology
- Research Institution
  The University of Tokyo
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Research and development of biological information platform for ChIP-seq analysis using next generation sequencerPrincipal Investigator
- Principal Investigator
  
  ITOH Takehiko
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  Tokyo Institute of Technology
A Novel Genomic Approch for the Understanding of the Structure and Function of Chromosomes
- Principal Investigator
  
  SHIRAHIGE Katsuhiko
- Project Period (FY)
  2006 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Tokyo Institute of Technology

[Book] “Single Molecule and Single Cell Sequencing”, Advances in Experimental Medicine2019
- Author(s)
  Yutaka Suzuki (Editor)
- Total Pages
  150
- Publisher
  Springer Singapore
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] Methods in Enzymology, Elsevier Life Sciences (CA) vol. 409, chapter 23, 389-4102006
- Author(s)
  Y.Kugou, H.Sasanuma, K.Matsumoto, K.Shirahige, K.Ohta
- Total Pages
  575
- Publisher
  Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Modeling the SDF-1/CXCR4 protein using advanced artificial intelligence and antagonist screening for Japanese anchovy2024
- Author(s)
  Issei Yahiro、Kyle D. Barnuevo、Oga Sato、Sipra Mohapatra、Atsushi Toyoda、Takehiko Itoh、Kaoru Ohno、Michiya Matsuyama、Tapas Chakraborty、 Kohei Ohta
- Journal Title
  
  Frontiers in Physiology
  
  Volume: 15 Pages: 1349119-1349119
- DOI
  10.3389/fphys.2024.1349119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00386
[Journal Article] Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz2024
- Author(s)
  3.Uehata T, Yamada S, Ori D, Vandenbon A, Giladi A, Jelinski A, Murakawa Y, Watanabe H, Takeuchi K, Toratani K, Mino T, Kiryu H, Standley DM, Tsujimura T, IkawaT, Kondoh G, Landthaler M, Kawamoto H, Rodewald HR, Amit I, Yamamoto R, Miyazaki M, Takeuchi O
- Journal Title
  
  Blood
  
  Volume: 143 Issue: 3 Pages: 243-257
- DOI
  10.1182/blood.2023020903
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KF0209, KAKENHI-PROJECT-23K11299, KAKENHI-PROJECT-20K12059, KAKENHI-PROJECT-22K19430, KAKENHI-PROJECT-22KF0226, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00402, KAKENHI-PROJECT-23K27425
[Journal Article] Impact of translational regulation on diel expression revealed by time‐series ribosome profiling in Arabidopsis2024
- Author(s)
  Aoyama Haruka、Arae Toshihiro、Yamashita Yui、Toyoda Atsushi、Naito Satoshi、Sotta Naoyuki、Chiba Yukako
- Journal Title
  
  The Plant Journal
  
  Volume: - Issue: 6 Pages: 1-18
- DOI
  10.1111/tpj.16716
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22KJ0759, KAKENHI-PROJECT-23K05628, KAKENHI-PLANNED-20H05926, KAKENHI-PROJECT-22H04925
[Journal Article] The history of ancient Japanese dogs revealed by mitogenomes2024
- Author(s)
  Xiayire Xiaokaiti, Takao Sato, Kenji Kasai, Kenichi Machida, Kyomi Yamazaki, Naomitsu Yamaji, Hiroki Kikuchi, Jun Gojobori1, Hitomi Hongo, Yohey Terai, Takashi Gakuhari
- Journal Title
  
  Anthropological Science
  
  Volume: 132 Issue: 1 Pages: 1-11
- DOI
  10.1537/ase.230617
- ISSN
  0918-7960, 1348-8570
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05819, KAKENHI-PLANNED-20H05822, KAKENHI-PLANNED-23H04846, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04358, KAKENHI-PROJECT-23K22009
[Journal Article] PIGB maintains nuclear lamina organization in skeletal muscle of Drosophila2024
- Author(s)
  Yamamoto-Hino Miki、Ariura Masaru、Tanaka Masahito、Iwasaki Yuka W.、Kawaguchi Kohei、Shimamoto Yuta、Goto Satoshi
- Journal Title
  
  Journal of Cell Biology
  
  Volume: 223 Issue: 2 Pages: 1-30
- DOI
  10.1083/jcb.202301062
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15109, KAKENHI-PROJECT-23KJ1900, KAKENHI-PROJECT-23KJ2155, KAKENHI-PROJECT-23K05772, KAKENHI-PROJECT-22K15099, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00431, KAKENHI-PROJECT-23K23811
[Journal Article] Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance2024
- Author(s)
  He Xiaohui、Kusuya Yoko、Hagiwara Daisuke、Toyotome Takahito、Arai Teppei、Bian Cai、Nagayama Masaki、Shibata Saho、Watanabe Akira、Takahashi Hiroki
- Journal Title
  
  Communications Biology
  
  Volume: 7 Issue: 1 Pages: 274-274
- DOI
  10.1038/s42003-024-05902-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07001, KAKENHI-PROJECT-22H04925
[Journal Article] Japanese wolves are most closely related to dogs and share DNA with East Eurasian dogs2024
- Author(s)
  Gojobori Jun、Arakawa Nami、Xiaokaiti Xiayire、Matsumoto Yuki、Matsumura Shuichi、Hongo Hitomi、Ishiguro Naotaka、Terai Yohey
- Journal Title
  
  Nature Communications
  
  Volume: 15 Issue: 1 Pages: 1680-1680
- DOI
  10.1038/s41467-024-46124-y
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-23H04846, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K22009
[Journal Article] Impact of <scp>ACSL4</scp> on the prognosis of hepatocellular carcinoma: Association with cancer‐associated fibroblasts and the tumour immune microenvironment2024
- Author(s)
 Toshida Katsuya、Itoh Shinji、Iseda Norifumi、Tomiyama Takahiro、Yoshiya Shohei、Toshima Takeo、Liu Yu‐Chen、Iwasaki Takeshi、Okuzaki Daisuke、Taniguchi Koji、Oda Yoshinao、Mori Masaki、Yoshizumi Tomoharu
- Journal Title
 
 Liver International
 
 Volume: 44 Issue: 4 Pages: 1011-1023
- DOI
 10.1111/liv.15839
- Peer Reviewed
- Data Source
 KAKENHI-PROJECT-23K08133, KAKENHI-PROJECT-22H04925
[Journal Article] Neonatal skin dysbiosis to infantile atopic dermatitis: Mitigating effects of skin care2024
- Author(s)
  Aoyama Reika、Nakagawa Seitaro、Ichikawa Yoko、Inohara Naohiro、Yamazaki Yuriko、Ito Tomoka、Sugihira Takashi、Kono Michihiro、Akiyama Masashi、Takahashi Hiroki、Takaya Akiko、Ichikawa Fumitaka、Nakano Taiji、Tanaka Seiko、Koyano Yutaka、Fujimoto Manabu、Nunez Gabriel、Shimojo Naoki、Nakamura Yuumi
- Journal Title
  
  Allergy
  
  Volume: 0 Issue: 6 Pages: 1-5
- DOI
  10.1111/all.16095
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K19617, KAKENHI-PROJECT-20H03701, KAKENHI-PROJECT-22H04925
[Journal Article] Revealing neuropilin expression patterns in pancreatic cancer: From single-cell to therapeutic opportunities (Review)2024
- Author(s)
  Meng Sikun、Hara Tomoaki、Sato Hiromichi、Tatekawa Shotaro、Tsuji Yoshiko、Saito Yoshiko、Hamano Yumiko、Arao Yasuko、Gotoh Noriko、Ogawa Kazuhiko、Ishii Hideshi
- Journal Title
  
  Oncology Letters
  
  Volume: 27 Issue: 3 Pages: 1-8
- DOI
  10.3892/ol.2024.14247
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18237, KAKENHI-PROJECT-23K07108, KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00541, KAKENHI-PROJECT-21H02761
[Journal Article] Paneth-like cells produced from OLFM4+ stem cells support OLFM4+ stem cell growth in advanced colorectal cancer2024
- Author(s)
  Sakahara Mizuho、Okamoto Takuya、Srivastava Upasna、Natsume Yasuko、Yamanaka Hitomi、Suzuki Yutaka、Obama Kazutaka、Nagayama Satoshi、Yao Ryoji
- Journal Title
  
  Communications Biology
  
  Volume: 7 Issue: 1 Pages: 27-27
- DOI
  10.1038/s42003-023-05504-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19468, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02770
[Journal Article] RN7SL1 may be translated under oncogenic conditions2024
- Author(s)
  Hara Tomoaki、Meng Sikun、Tsuji Yoshiko、Arao Yasuko、Saito Yoshiko、Sato Hiromichi、Motooka Daisuke、Uchida Shizuka、Ishii Hideshi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 121 Issue: 12
- DOI
  10.1073/pnas.2312322121
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18313, KAKENHI-PROJECT-23K19505, KAKENHI-PROJECT-23KK0153, KAKENHI-PROJECT-21K19526, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00541
[Journal Article] Gene expression and metabolite levels converge in the thermogenic spadix of skunk cabbage2024
- Author(s)
  Haruka Tanimoto、Yui Umekawa、Hideyuki Takahashi、Kota Goto、Kikukatsu Ito
- Journal Title
  
  Plant Physiology
  
  Volume: － Issue: 2 Pages: 1561-1585
- DOI
  10.1093/plphys/kiae059
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Mechanisms of action and resistance in histone methylation-targeted therapy.2024
- Author(s)
  Yamagishi M, Kuze Y, Kobayashi S, Nakashima M, Morishima S, Kawamata T, Makiyama J, Suzuki K, Seki M, Abe K, Imamura K, Watanabe E, Tsuchiya K, Yasumatsu I, Takayama G, Hizukuri Y, Ito K, Taira Y, Nannya Y, Tojo A, Watanabe T, Tsutsumi S, Suzuki Y, Uchimaru K.
- Journal Title
  
  Nature
  
  Volume: 627 Issue: 8002 Pages: 221-228
- DOI
  10.1038/s41586-024-07103-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K08386, KAKENHI-PROJECT-22K15420, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24248
[Journal Article] Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease2024
- Author(s)
  Ishii Tomoya、Tsuchida Natsuki、Hemelda Niarsi Merry、Saito Kirara、Bao Jiyuan、Watanabe Megumi、Toyoda Atsushi、Matsubara Takehiro、Sato Mayuko、Toyooka Kiminori、Ishihama Nobuaki、Shirasu Ken、Matsui Hidenori、Toyoda Kazuhiro、Ichinose Yuki、Hayashi Tetsuya、Kawaguchi Akira、Noutoshi Yoshiteru
- Journal Title
  
  The ISME Journal
  
  Volume: 18 Issue: 1 Pages: 1-12
- DOI
  10.1093/ismejo/wrad003
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K05157, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00364
[Journal Article] Deep generative design of RNA family sequences2024
- Author(s)
  Shunsuke Sumi、Michiaki Hamada、Hirohide Saito
- Journal Title
  
  Nature Methods
  
  Volume: 21 Issue: 3 Pages: 435-443
- DOI
  10.1038/s41592-023-02148-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility2024
- Author(s)
  Ishii Satoko、Kakizuka Taishi、Park Sung-Joon、Tagawa Ayako、Sanbo Chiaki、Tanabe Hideyuki、Ohkawa Yasuyuki、Nakanishi Mahito、Nakai Kenta、Miyanari Yusuke
- Journal Title
  
  Nature Genetics
  
  Volume: 56 Issue: 3 Pages: 473-482
- DOI
  10.1038/s41588-024-01658-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19275, KAKENHI-PUBLICLY-22H04676, KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00372
[Journal Article] Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes2023
- Author(s)
  Okuno Miki、Mochimaru Yuta、Matsuoka Kentaro、Yamabe Takahiro、Matiz-Ceron Luisa、Jogahara Takamichi、Toyoda Atsushi、Kuroiwa Asato、Itoh Takehiko
- Journal Title
  
  Scientific Data
  
  Volume: 10 Issue: 1 Pages: 927-927
- DOI
  10.1038/s41597-023-02845-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K18093, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23861
[Journal Article] Microglia sense astrocyte dysfunction and prevent disease progression in an Alexander disease model2023
- Author(s)
  Saito Kozo、Shigetomi Eiji、Shinozaki Youichi、Kobayashi Kenji、Parajuli Bijay、Kubota Yuto、Sakai Kent、Miyakawa Miho、Horiuchi Hiroshi、Nabekura Junichi、Koizumi Schuichi
- Journal Title
  
  Brain
  
  Volume: 147 Issue: 2 Pages: 698-716
- DOI
  10.1093/brain/awad358
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19411, KAKENHI-PROJECT-22K15704, KAKENHI-PROJECT-20KK0366, KAKENHI-PROJECT-22K06445, KAKENHI-PROJECT-22K07368, KAKENHI-PROJECT-23K05976, KAKENHI-PROJECT-19K17042, KAKENHI-PLANNED-20H05902, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04786
[Journal Article] GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level2023
- Author(s)
  Takeaki Taniguchi、Miki Okuno、Takahiro Shinoda、Fumiya Kobayashi、Kazuki Takahashi、Hideaki Yuasa、Yuta Nakamura、Hiroyuki Tanaka、Rei Kajitani、Takehiko Itoh
- Journal Title
  
  DNA Research
  
  Volume: 30(4) Issue: 4
- DOI
  10.1093/dnares/dsad017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23861
[Journal Article] Extensive copy number variation explains genome size variation in the unicellular zygnematophycean alga, Closterium peracerosum-strigosum-littorale complex2023
- Author(s)
  Kawaguchi, Y., Tsuchikane, Y., Tanaka, K., Taji, T., Suzuki, Y., Toyoda, A., Ito, M., Watano, Y., Nishiyama, T., Sekimoto, H., Tsuchimatsu, T.
- Journal Title
  
  Genome Biol. Evol.
  
  Volume: 15 Issue: 8
- DOI
  10.1093/gbe/evad115
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21451, KAKENHI-PROJECT-22K21352, KAKENHI-PUBLICLY-23H04206, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00334
[Journal Article] Whole-genome sequencing reveals the molecular implications of the stepwise progression of lung adenocarcinoma2023
- Author(s)
  Haga Y, Sakamoto Y, Kajiya K, Kawai H, Oka M, Motoi N, Shirasawa M, Yotsukura M, Watanabe S, Arai M, Zenkoh J, Shiraishi K, Seki M, Kanai A, Shiraishi Y, Yatabe Y, Matsubara D, Suzuki Y, Noguchi M, Kohno T, Suzuki A.
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 8375-8375
- DOI
  10.1038/s41467-023-43732-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K14469, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00545, KAKENHI-PROJECT-23K27389, KAKENHI-PROJECT-23K27449
[Journal Article] Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing2023
- Author(s)
  Fauzia Kartika Afrida、Aftab Hafeza、Miftahussurur Muhammad、Waskito Langgeng Agung、Tuan Vo Phuoc、Alfaray Ricky Indra、Matsumoto Takashi、Yurugi Michiyuki、Subsomwong Phawinee、Kabamba Evariste Tshibangu、Akada Junko、Yamaoka Yoshio
- Journal Title
  
  BMC Microbiology
  
  Volume: 23 Issue: 1 Pages: 159-159
- DOI
  10.1186/s12866-023-02889-8
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15454, KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-22K17352, KAKENHI-PROJECT-18KK0266, KAKENHI-PUBLICLY-21H00346, KAKENHI-PROJECT-22H04925
[Journal Article] Meningiomas in patients with neurofibromatosis type 2 predominantly comprise 'immunogenic subtype' tumours characterised by macrophage infiltration2023
- Author(s)
  Teranishi Y, Miyawaki S, Nakatochi M, Okano A, Ikemura M, Komura D, Katoh H, Mitsui J, Morishita S, Ushiku T, Ishikawa S, Nakatomi H, Saito N.
- Journal Title
  
  Acta Neuropathologica Communications
  
  Volume: 11(1) Issue: 1 Pages: 156-156
- DOI
  10.1186/s40478-023-01645-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04923, KAKENHI-PROJECT-22H04925
[Journal Article] A non-cell-autonomous circadian rhythm of bioluminescence reporter activities in individual duckweed cells2023
- Author(s)
  Watanabe Emiri、Muranaka Tomoaki、Nakamura Shunji、Isoda Minako、Horikawa Yu、Aiso Tsuyoshi、Ito Shogo、Oyama Tokitaka
- Journal Title
  
  Plant Physiology
  
  Volume: kiad218 Issue: 1 Pages: 677-688
- DOI
  10.1093/plphys/kiad218
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20J00255, KAKENHI-PROJECT-22KJ0706, KAKENHI-PROJECT-20K15861, KAKENHI-PROJECT-20K06342, KAKENHI-PROJECT-22H04925
[Journal Article] Complete genomes of mutualistic bacterial co-symbionts ”Candidatus Sulcia muelleri” and ”Candidatus Nasuia deltocephalinicola” of the rice green leafhopper Nephotettix cincticeps2023
- Author(s)
  Minoru Moriyama、Yudai Nishide、Atsushi Toyoda、Takehiko Itoh、Takema Fukatsu
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 12(9) Issue: 9
- DOI
  10.1128/mra.00353-23
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Low-grade intestinal metaplasia in Indonesia: Insights into the expression of proinflammatory cytokines during Helicobacter pylori infection and unique East-Asian CagA characteristics2023
- Author(s)
  Miftahussurur Muhammad、Alfaray Ricky Indra、Fauzia Kartika Afrida、Dewayani Astri、Doohan Dalla、Waskito Langgeng Agung、Rezkitha Yudith Annisa Ayu、Utomo Didik Huswo、Somayana Gde、Fahrial Syam Ari、Lubis Masrul、Akada Junko、Matsumoto Takashi、Yamaoka Yoshio
- Journal Title
  
  Cytokine
  
  Volume: 163 Pages: 156122-156122
- DOI
  10.1016/j.cyto.2022.156122
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H03473, KAKENHI-PUBLICLY-21H00346, KAKENHI-PROJECT-23K24133
[Journal Article] Best practices for comprehensive annotation of neuropeptides of Gryllus bimaculatus2023
- Author(s)
  Takako Mochizuki、Mika Sakamoto、Yasuhiro Tanizawa、Hitomi Seike、Zhen Zhu、Yi Jun Zhou、Keisuke Fukumura、Shinji Nagata、Yasukazu Nakamura
- Journal Title
  
  Insects
  
  Volume: 14(2) Issue: 2 Pages: 121-121
- DOI
  10.3390/insects14020121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20K21304, KAKENHI-PROJECT-21H02129
[Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023
- Author(s)
  Kobayashi Y, Niida A, Nagayama S, Saeki K, （中略）, Mizuno S, Kawazu M, Kohsaka S, Ueno T, Mano H, Ishihara S, Uemura M, Mori M, Doki Y, Eguchi H, Oshima M, Suzuki Y, Shibata T, Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: 129 Issue: 7 Pages: 1105-1118
- DOI
  10.1038/s41416-023-02395-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07153, KAKENHI-PROJECT-21K12117, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02772, KAKENHI-PROJECT-21H02795, KAKENHI-PROJECT-23K24164
[Journal Article] Angiogenic and inflammatory responses in human induced microglia-like (iMG) cells from patients with Moyamoya disease2023
- Author(s)
  Shirozu Noritoshi, et al.
- Journal Title
  
  Scientific Reports
  
  Volume: 13 Issue: 1 Pages: 14842-14842
- DOI
  10.1038/s41598-023-41456-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K07334, KAKENHI-PROJECT-23K08545, KAKENHI-PROJECT-23K10453, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H03044, KAKENHI-PROJECT-23K24261
[Journal Article] Small RNA-mediated silencing of phototropin suppresses the induction of photoprotection in the green alga Chlamydomonas reinhardtii2023
- Author(s)
  Yamasaki, T., Tokutsu, R., Sawa, H., Razali, N.N.B., Hayashi, M., Minagawa, J.
- Journal Title
  
  Proc. Natl. Acad. Sci. U. S. A.
  
  Volume: 120 Issue: 18
- DOI
  10.1073/pnas.2302185120
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03282, KAKENHI-PROJECT-22K06268, KAKENHI-PROJECT-22H04925
[Journal Article] Haplotype-resolved chromosomal-level assembly of wasabi (Eutrema japonicum) genome2023
- Author(s)
  Hiroyuki Tanaka、Tatsuki Hori、Shohei Yamamoto、Atsushi Toyoda、Kentaro Yano、Kyoko Yamane、Takehiko Itoh
- Journal Title
  
  Scientific Data
  
  Volume: 10(1) Issue: 1 Pages: 441-441
- DOI
  10.1038/s41597-023-02356-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Identification of small-sized intrachromosomal segments at the ends of INV-DUP-DEL patterns2023
- Author(s)
  Shimojima Yamamoto K, Tamura T, Okamoto N, Nishi E, Noguchi A, Takahashi I, Sawaishi Y, Shimizu M, Kanno H, Minakuchi Y, Toyoda A, Yamamoto T
- Journal Title
  
  Journal of Human Genetics
  
  Volume: 68 Issue: 11 Pages: 751-757
- DOI
  10.1038/s10038-023-01181-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K07257, KAKENHI-PROJECT-21K07873, KAKENHI-PROJECT-22H04925
[Journal Article] Long-read sequence analysis for clustered genomic copy number aberrations revealed architectures of intricately intertwined rearrangements2023
- Author(s)
  Tamura T, Shimojima Yamamoto K, Okamoto N, Yagasak H, Morioka I, Kanno H, Minakuchi Y, Toyoda A, Yamamoto T
- Journal Title
  
  American Journal of Medical Genetics Part A
  
  Volume: 191 Issue: 1 Pages: 112-119
- DOI
  10.1002/ajmg.a.62997
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07873, KAKENHI-PROJECT-22H04925
[Journal Article] Cellular senescence induction leads to progressive cell death via the INK4a‐RB pathway in naked?mole‐rats2023
- Author(s)
  Kawamura Y, Oka K, Semba T, Takamori M, Sugiura Y, Yamasaki R, Suzuki Y, Chujo T, Nagase M, Oiwa Y, Fujioka S, Homma S, Yamamura Y, Miyawaki S, Narita M, Fukuda T, Sakai Y, Ishimoto T, Tomizawa K, Suematsu M, Yamamoto T, Bono H, Okano H, Miura K
- Journal Title
  
  The EMBO Journal
  
  Volume: 42 Issue: 16
- DOI
  10.15252/embj.2022111133
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21KK0153, KAKENHI-PROJECT-22H04925
[Journal Article] Differential cardiomyocyte transcriptomic remodeling during in vitro Trypanosoma cruzi infection using laboratory strains provides implications on pathogenic host responses2023
- Author(s)
  Candray-Medina KS, Nakagama Y, Ito M, Nakagama S, Tshibangu-Kabamba E, Takeda N, Sugiura Y, Nitahara Y, Michimuko-Nagahara Y, Kaku N, Onizuka Y, Arias CE, Mejia M, Alas K, Pena S, Maejima Y, Komuro I, Nakajima-Shimada J, Kido Y.
- Journal Title
  
  Tropical Medicine and Health
  
  Volume: 51 Issue: 1 Pages: 86-86
- DOI
  10.1186/s41182-023-00552-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K14509, KAKENHI-PROJECT-22KK0279, KAKENHI-PROJECT-19K16626, KAKENHI-PROJECT-22K17352, KAKENHI-PROJECT-22H04925
[Journal Article] Alternative splicing of a single exon causes a major impact on the affinity of Caenorhabditis elegans tropomyosin isoforms for actin filaments2023
- Author(s)
  Ono Shoichiro、Watabe Eichi、Morisaki Keita、Ono Kanako、Kuroyanagi Hidehito
- Journal Title
  
  Frontiers in Cell and Developmental Biology
  
  Volume: 11 Pages: 1208913-1208913
- DOI
  10.3389/fcell.2023.1208913
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03181, KAKENHI-PROJECT-22H04925
[Journal Article] Murine breast cancers disorganize the liver transcriptome in a zonated manner2023
- Author(s)
  Alexis Vandenbon、Rin Mizuno、Riyo Konishi、Masaya Onishi、Kyoko Masuda、Yuka Kobayashi、Hiroshi Kawamoto、Ayako Suzuki、Chenfeng He、Yuki Nakamura、Kosuke Kawaguchi、Masakazu Toi、Masahito Shimizu、Yasuhito Tanaka、Yutaka Suzuki、Shinpei Kawaoka
- Journal Title
  
  Communications Biology
  
  Volume: 6(1) Issue: 1 Pages: 97-97
- DOI
  10.1038/s42003-023-04479-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H03451, KAKENHI-PROJECT-20K06609
[Journal Article] Neural Isoforms of Agrin Are Generated by Reduced PTBP1-RNA Interaction Network Spanning the Neuron-Specific Splicing Regions in AGRN2023
- Author(s)
  Bushra Samira、Lin Ying-Ni、Joudaki Atefeh、Ito Mikako、Ohkawara Bisei、Ohno Kinji、Masuda Akio
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 24 Issue: 8 Pages: 7420-7420
- DOI
  10.3390/ijms24087420
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-22K19269, KAKENHI-PROJECT-23K06412, KAKENHI-PROJECT-20K06925, KAKENHI-PROJECT-21K06392, KAKENHI-PROJECT-23K21309, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04815, KAKENHI-PROJECT-23K27485
[Journal Article] Downregulation of 15-PGDH enhances MASH-HCC development via fatty acid-induced T-cell exhaustion2023
- Author(s)
  Hu X、Yasuda T、Yasuda-Yosihara N、Yonemura A、Umemoto T、Nakachi Y、Yamashita K、Semba T、Arima K、Uchihara T、Nishimura A、Bu L、Fu Li、Wei F、Zhang J、Tong Y、Wang H、Iwamoto K、Fukuda T、Nakagawa H、Taniguchi K、Miyamoto Y、Baba H、Ishimoto T
- Journal Title
  
  JHEP Reports
  
  Volume: 5 Issue: 12 Pages: 100892-100892
- DOI
  10.1016/j.jhepr.2023.100892
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K08051, KAKENHI-PROJECT-21K08686, KAKENHI-PROJECT-21KK0153, KAKENHI-PROJECT-20H03758, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K27463, KAKENHI-PROJECT-23K27669
[Journal Article] HMGA2 directly mediates chromatin condensation in association with neuronal fate regulation2023
- Author(s)
  Kuwayama Naohiro、Kujirai Tomoya、Kishi Yusuke、Hirano Rina、Echigoya Kenta、Fang Lingyan、Watanabe Sugiko、Nakao Mitsuyoshi、Suzuki Yutaka、Ishiguro Kei-ichiro、Kurumizaka Hitoshi、Gotoh Yukiko
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 6420-6420
- DOI
  10.1038/s41467-023-42094-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15033, KAKENHI-PROJECT-22K19823, KAKENHI-PROJECT-20KK0185, KAKENHI-PUBLICLY-22H04687, KAKENHI-PUBLICLY-23H04214, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00431, KAKENHI-PROJECT-21H02686
[Journal Article] Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere2023
- Author(s)
  Piyusha Mongia、Naoko Toyofuku、Ziyi Pan、Ran Xu、Yakumo Kinoshita、Keitaro Oki、Hiroki Takahashi、Yoshitoshi Ogura、Tetsuya Hayashi、Takuro Nakagawa
- Journal Title
  
  Communications Biology
  
  Volume: 6(1) Issue: 1 Pages: 551-551
- DOI
  10.1038/s42003-023-04925-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Bioinformatics approaches for unveiling virus-host interactions2023
- Author(s)
  Iuchi Hitoshi、Kawasaki Junna、Kubo Kento、Fukunaga Tsukasa、Hokao Koki、Yokoyama Gentaro、Ichinose Akiko、Suga Kanta、Hamada Michiaki
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 21 Pages: 1774-1784
- DOI
  10.1016/j.csbj.2023.02.044
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K15078, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22KJ2901
[Journal Article] Comparative pathogenicity of SARS-CoV-2 Omicron subvariants including BA.1, BA.2, and BA.52023
- Author(s)
  Tamura T, Yamasoba D, Oda Y, Ito J, Kamasaki T, Nao N, Hashimoto R, Fujioka Y, Suzuki R, Wang L, Ito H, Kashima Y, Kimura I, Kishimoto M, Tsuda M, Sawa H, Yoshimatsu K, Yamamoto Y, Nagamoto T, Kanamune J, Suzuki Y, Ohba Y, et al.
- Journal Title
  
  Communications Biology
  
  Volume: 6 Issue: 1 Pages: 772-772
- DOI
  10.1038/s42003-023-05081-w
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KF0004, KAKENHI-PROJECT-22KJ0023, KAKENHI-PLANNED-20H05872, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H01171, KAKENHI-PROJECT-21H02736, KAKENHI-PROJECT-21H03802
[Journal Article] MED26‐containing Mediator may orchestrate multiple transcription processes through organization of nuclear bodies2023
- Author(s)
  Suzuki Hidefumi、Furugori Kazuki、Abe Ryota、Ogawa Shintaro、Ito Sayaka、Akiyama Tomohiko、Horiuchi Keiko、Takahashi Hidehisa
- Journal Title
  
  BioEssays
  
  Volume: 45 Issue: 4
- DOI
  10.1002/bies.202200178
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15041, KAKENHI-PLANNED-21H05159, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02405, KAKENHI-PROJECT-21K19356, KAKENHI-ORGANIZER-21H05158
[Journal Article] FIGNL1 AAA+ ATPase remodels RAD51 and DMC1 filaments in pre-meiotic DNA replication and meiotic recombination2023
- Author(s)
  Ito Masaru、Furukohri Asako、Matsuzaki Kenichiro、Fujita Yurika、Toyoda Atsushi、Shinohara Akira
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 6857-6857
- DOI
  10.1038/s41467-023-42576-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18036, KAKENHI-PROJECT-20K15716, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K20059
[Journal Article] Mitochondrial gene defects in Arabidopsis can broadly affect mitochondrial gene expression through copy number2023
- Author(s)
  Hiroki Ayabe、Atsushi Toyoda、Akitoshi Iwamoto、Nobuhiro Tsutsumi、Shin-ichi Arimura
- Journal Title
  
  Plant Physiology
  
  Volume: 191 Issue: 4 Pages: 2256-2275
- DOI
  10.1093/plphys/kiad024
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PUBLICLY-21H00375, KAKENHI-PROJECT-20H05680
[Journal Article] Multifaced roles of desmoplastic reaction and fibrosis in pancreatic cancer progression: Current understanding and future directions2023
- Author(s)
  Sato Hiromichi、Hara Tomoaki、Meng Sikun、Tsuji Yoshiko、Arao Yasuko、Saito Yoshiko、Sasaki Kazuki、Kobayashi Shogo、Doki Yuichiro、Eguchi Hidetoshi、Ishii Hideshi
- Journal Title
  
  Cancer Science
  
  Volume: 114 Issue: 9 Pages: 3487-3495
- DOI
  10.1111/cas.15890
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K18313, KAKENHI-PROJECT-23K19505, KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00541
[Journal Article] An integrative epigenomic approach identifies ELF3 as an oncogenic regulator in ASCL1‐positive neuroendocrine carcinoma2023
- Author(s)
  Horie M, Tanaka H, Suzuki M, Sato Y, Takata S, Takai E, Miyashita N, Saito A, Nakatani Y, Yachida S
- Journal Title
  
  Cancer Science
  
  Volume: - Issue: 6 Pages: 2596-2608
- DOI
  10.1111/cas.15764
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06800, KAKENHI-PROJECT-22K08277, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20K16440
[Journal Article] Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families2023
- Author(s)
  Kohei Nagao、Yoshiki Tanaka、Rei Kajitani、Atsushi Toyoda、Takehiko Itoh、Souichirou Kubota、Yuji Goto
- Journal Title
  
  PLOS ONE
  
  Volume: 18 Issue: 8 Pages: e0286941-e0286941
- DOI
  10.1371/journal.pone.0286941
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Stable nuclear transformation methods for Euglena gracilis and its application to a related Euglenida2023
- Author(s)
  Masami Nakazawa、Hiroko Andoh、Hiromi Tsujii、Katsumi Amada、Hitomi Okuno、Yusuke Gejima、Kumi Iizuka、Daiki Haruguchi、Moe Maruyama、Yuichiro Kashiyama、Mitsuhiro Ueda、Kazutaka Miyatake、Tatsuji Sakamoto
- Journal Title
  
  Algal Research
  
  Volume: 75 Pages: 103292-103292
- DOI
  10.1016/j.algal.2023.103292
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes2023
- Author(s)
  Yamabe Takahiro、Kajitani Rei、Toyoda Atsushi、Itoh Takehiko
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 15 Issue: 9
- DOI
  10.1093/gbe/evad141
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K23861
[Journal Article] A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae2023
- Author(s)
  Hiruma Kei、Aoki Seishiro、Takino Junya、Higa Takeshi、Utami Yuniar Devi、Shiina Akito、Okamoto Masanori、Nakamura Masami、Kawamura Nanami、Ohmori Yoshihiro、Sugita Ryohei、Tanoi Keitaro、Sato Toyozo、Oikawa Hideaki、Minami Atsushi、Iwasaki Wataru、Saijo Yusuke
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 5288-5288
- DOI
  10.1038/s41467-023-40867-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06317, KAKENHI-PLANNED-21H05150, KAKENHI-PLANNED-21H05152, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K26903
[Journal Article] Simultaneous measurement of nascent transcriptome and translatome using 4-thiouridine metabolic RNA labeling and translating ribosome affinity purification2023
- Author(s)
  Imai Hirotatsu、Utsumi Daisuke、Torihara Hidetsugu、Takahashi Kenzo、Kuroyanagi Hidehito、Yamashita Akio
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 51 Issue: 14 Pages: e76-e76
- DOI
  10.1093/nar/gkad545
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08387, KAKENHI-PROJECT-23K08826, KAKENHI-PROJECT-21K15015, KAKENHI-PROJECT-20H03181, KAKENHI-PROJECT-22H04925
[Journal Article] Complete Genome Sequence of the Thermophilic Enterococcus faecalis Strain K-4, Isolated from a Grass Silage in Thailand2023
- Author(s)
  Kuwabara Meimi、Irimajiri Rei、Togo Shun、Fujino Yasuhiro、Honsho Masanori、Mawatari Shiro、Fujino Takehiko、Doi Katsumi
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 12 Issue: 4
- DOI
  10.1128/mra.00814-22
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06839, KAKENHI-PROJECT-22K19155, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K20281
[Journal Article] GreenHill: a de novo chromosome-level scaffolding and phasing tool using Hi-C2023
- Author(s)
  Shun Ouchi、Rei Kajitani、Takehiko Itoh
- Journal Title
  
  Genome Biology
  
  Volume: 24(1) Issue: 1 Pages: 162-162
- DOI
  10.1186/s13059-023-03006-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23861
[Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023
- Author(s)
  Kitagawa A, Osawa T,Noda M,Kobayashi Y, Aki S,Nakano Y,Saito T,Shimizu D,Komatsu H,Sugaya M,Takahashi J,...Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: - Issue: 12 Pages: 22068-22068
- DOI
  10.1038/s41416-023-02256-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08826, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K07260, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-22K07774, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K08745, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24164
[Journal Article] Staphylococcus aureus MazG hydrolyzes oxidized guanine nucleotides and contributes to oxidative stress resistance2023
- Author(s)
  Fuki Nigo、Ryosuke Nakagawa、Yuuki Hirai、Lina Imai、Yutaka Suzuki、Kazuyuki Furuta、Chikara Kaito
- Journal Title
  
  Biochimie
  
  Volume: 209 Pages: 52-60
- DOI
  10.1016/j.biochi.2023.02.001
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22K19435, KAKENHI-PROJECT-23K24131
[Journal Article] PHACES-like syndrome with TMEM260 compound heterozygous variants2023
- Author(s)
  Yukiko Kuroda、Yoko Saito、Yumi Enomoto、Takuya Naruto、Jun Mitsui、Kenji Kurosawa
- Journal Title
  
  American Journal of Medical Genetics Part A
  
  Volume: 191 Issue: 8 Pages: 2215-2218
- DOI
  10.1002/ajmg.a.63245
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Crucial role of iron in epigenetic rewriting during adipocyte differentiation mediated by JMJD1A and TET2 activity2023
- Author(s)
  Suzuki T, Komatsu T, Shibata H, Tanioka A, Vargas D, Kawabata-Iwakawa R, Miura F, Masuda S, Hayashi M, Tanimura-Inagaki K, Morita S, Kohmaru J, Adachi K, Tobo M, Obinata H, Hirayama T, Kimura H, Sakai J, Nagasawa H, Itabashi H, Hatada I, Ito T, Inagaki T.
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 51 Issue: 12 Pages: 6120-6142
- DOI
  10.1093/nar/gkad342
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18411, KAKENHI-PROJECT-23K05727, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04826, KAKENHI-PROJECT-23K23490
[Journal Article] Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis2022
- Author(s)
  Rai A, Hirakawa H, Rai M, Shimizu Y, Shirasawa K, Kikuchi S, Seki H, Yamazaki M, Toyoda A, Isobe S, Muranaka T, Saito K
- Journal Title
  
  DNA Res.
  
  Volume: 29 Issue: 6 Pages: 1-14
- DOI
  10.1093/dnares/dsac043
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19082, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-20H02913
[Journal Article] Paternally inherited H3K27me3 affects chromatin accessibility in mouse embryos produced by round spermatid injection2022
- Author(s)
  Mizuki Sakamoto、Daiyu Ito、Rei Inoue、Sayaka Wakayama、Yasuyuki Kikuchi、Li Yang、Erika Hayashi、Rina Emura、Hirosuke Shiura、Takashi Kohda、Satoshi H. Namekawa、Takashi Ishiuchi、Teruhiko Wakayama、Masatoshi Ooga
- Journal Title
  
  Development
  
  Volume: 149(18) Issue: 18 Pages: 18-18
- DOI
  10.1242/dev.200696
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20J23364, KAKENHI-PLANNED-19H05756
[Journal Article] OAT10/SLC22A13 Acts as a Renal Urate Re-Absorber : Clinico-Genetic and Functional Analyses With Pharmacological Impacts2022
- Author(s)
  Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Keito Morimoto, Seiko Shimizu, Yuki Tanahashi, Takashi Tamura, Takaaki Kondo, Yasufumi Kato, Hirotaka Matsuo, et al.
- Journal Title
  
  Frontiers in Pharmacology
  
  Volume: 13 Pages: 842717-842717
- DOI
  10.3389/fphar.2022.842717
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21KK0173, KAKENHI-PROJECT-22KK0152, KAKENHI-PROJECT-20H00566, KAKENHI-PROJECT-20H00568, KAKENHI-PROJECT-23K21618, KAKENHI-PROJECT-22H04923
[Journal Article] Establishment of a reference single-cell RNA sequencing dataset for human pancreatic adenocarcinoma2022
- Author(s)
  Chijimatsu R、Kobayashi S、Takeda Y、Kitakaze M、Tatekawa S、Tachibana N、Saito T、Ennishi D、Tomida S、Sasaki K、Yamada D、Tomimaru Y、Takahashi H、Doki Y、Eguchi H
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 8 Pages: 104659-104659
- DOI
  10.1016/j.isci.2022.104659
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08773, KAKENHI-PROJECT-21K19526, KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00541, KAKENHI-PROJECT-20K16824, KAKENHI-PROJECT-20K18053
[Journal Article] Identification of ancestral sex chromosomes in the frog Glandirana rugosa bearing XX‐XY and ZZ‐ZW sex‐determining systems2022
- Author(s)
  Miura Ikuo、Shams Foyez、Jeffries Daniel Lee、Katsura Yukako、Mawaribuchi Shuuji、Perrin Nicolas、Ito Michihiko、Ogata Mitsuaki、Ezaz Tariq
- Journal Title
  
  Molecular Ecology
  
  Volume: 31 Issue: 14 Pages: 3859-3870
- DOI
  10.1111/mec.16551
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K06454, KAKENHI-ORGANIZER-22H05069, KAKENHI-PROJECT-22H04925, KAKENHI-PLANNED-22H05070
[Journal Article] Phenolic signals for prehaustorium formation in Striga hermonthica2022
- Author(s)
  Natsumi Aoki、Songkui Cui、Chiharu Ito、Kie Kumaishi、Shungo Kobori、Yasunori Ichihashi、Satoko Yoshida
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 13 Pages: 1077996-1077996
- DOI
  10.3389/fpls.2022.1077996
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02506, KAKENHI-PLANNED-20H05909
[Journal Article] Analysis of gastric microbiota and Helicobacter pylori infection in gastroesophageal reflux disease2022
- Author(s)
  Sugihartono Titong、Fauzia Kartika Afrida、Miftahussurur Muhammad、Waskito Langgeng Agung、Rejeki Purwo Sri、I’tishom Reny、Alfaray Ricky Indra、Doohan Dalla、Amalia Rizki、Savitri Camilia Metadea Aji、Rezkitha Yudith Annisa Ayu、Akada Junko、Matsumoto Takashi、Yamaoka Yoshio
- Journal Title
  
  Gut Pathogens
  
  Volume: 14 Issue: 1 Pages: 38-38
- DOI
  10.1186/s13099-022-00510-3
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H03473, KAKENHI-PUBLICLY-21H00346, KAKENHI-PROJECT-23K24133
[Journal Article] Helicobacter pylori prevalence in Indonesia: Higher infection risk in Eastern region population2022
- Author(s)
  Hasan Maulahela、Dalla Doohan、Yudith Annisa Ayu Rezkhita、Ari Fahrial Syam、Langgeng Agung Waskito、Camilia Metadea Aji Savitri、Marselino Richardo、Abdul Rahman、Yoma Sari Namara、Hamzah Shatri、Andri Sanityoso、Gontar Alamsyah Siregar、Eko Sudarmo、Tomohisa Uchida、Yoshio Yamaoka、Muhammad Miftahussurur et al.
- Journal Title
  
  F1000Research
  
  Volume: 11 Pages: 1581-1581
- DOI
  10.12688/f1000research.127094.1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Semibulk RNA-seq analysis as a convenient method for measuring gene expression statuses in a local cellular environment2022
- Author(s)
  Kyoko Muto、Issei Tsuchiya、Soo Hyeon Kim、Satoi Nagasawa、Mariko Takishita、Koichiro Tsugawa、Hiroaki Saito、Yusuke Komazaki、Toru Torii、Teruo Fujii、Yutaka Suzuki、Ayako Suzuki、Masahide Seki
- Journal Title
  
  Scientific Reports
  
  Volume: 12(1) Issue: 1 Pages: 15309-15309
- DOI
  10.1038/s41598-022-19391-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Circadian-period variation underlies the local adaptation of photoperiodism in the short-day plant Lemna aequinoctialis2022
- Author(s)
  Muranaka Tomoaki、Ito Shogo、Kudoh Hiroshi、Oyama Tokitaka
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 7 Pages: 104634-104634
- DOI
  10.1016/j.isci.2022.104634
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K18239, KAKENHI-ORGANIZER-21H05129, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20J00255, KAKENHI-PROJECT-20K15861
[Journal Article] A bifurcation concept for B-lymphoid/plasmacytoid dendritic cells with largely fluctuating transcriptome dynamics.2022
- Author(s)
  Nagaharu K, Kojima Y, Hirose H, Minoura K, Hinohara K, Minami H, Kageyama Y, Sugimoto Y, Masuya M, Nii S, Seki M, Suzuki Y, Tawara I, Shimamura T, Katayama N, Nishikawa H, Ohishi K.
- Journal Title
  
  Cell Rep.
  
  Volume: 40 Issue: 9 Pages: 111260-111260
- DOI
  10.1016/j.celrep.2022.111260
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K10838, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00455, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839
[Journal Article] DDX41 coordinates RNA splicing and transcriptional elongation to prevent DNA replication stress in hematopoietic cells2022
- Author(s)
  Satoru Shinriki;Mayumi Hirayama;Akiko Nagamachi;Akihiko Yokoyama;Takeshi Kawamura;Akinori Kanai;Hidehiko Kawai;Junichi Iwakiri;Rin Liu;Manabu Maeshiro;Saruul Tungalag;Masayoshi Tasaki;Mitsuharu Ueda;Kazuhito Tomizawa;Naoyuki Kataoka;Takashi Ideue;Yutaka Suzuki;Kiyoshi Asai;Tokio Tani;Toshiya Inaba;Hirotaka Matsui
- Journal Title
  
  Leukemia
  
  Volume: 36 Issue: 11 Pages: 2605-2620
- DOI
  10.1038/s41375-022-01708-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K06174, KAKENHI-PROJECT-21K08395, KAKENHI-PROJECT-21K08419, KAKENHI-PROJECT-21K12239, KAKENHI-PROJECT-22K10195, KAKENHI-PROJECT-22K12375, KAKENHI-PROJECT-22K20997, KAKENHI-PROJECT-22KK0119, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02948, KAKENHI-PROJECT-20K12041, KAKENHI-PROJECT-23K24368
[Journal Article] The latent dedifferentiation capacity of newt limb muscles is unleashed by a combination of metamorphosis and body growth2022
- Author(s)
  Zhan Yang Yu、Shota Shiga、Martin Miguel Casco-Robles、Kazuhito Takeshima、Fumiaki Maruo、Chikafumi Chiba
- Journal Title
  
  Scientific Reports
  
  Volume: 12(1) Issue: 1 Pages: 11653-11653
- DOI
  10.1038/s41598-022-15879-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-18H04061
[Journal Article] Somatic GJA4 gain-of-function mutation in orbital cavernous venous malformations2022
- Author(s)
  Hongo Hiroki、Miyawaki Satoru、Teranishi Yu、Mitsui Jun、Katoh Hiroto、Komura Daisuke、Tsubota Kinya、Matsukawa Takashi、Watanabe Masakatsu、Kurita Masakazu、Yoshimura Jun、Dofuku Shogo、Ohara Kenta、Ishigami Daiichiro、Okano Atsushi、Kato Motoi、Hakuno Fumihiko、Takahashi Ayaka、Kunita Akiko、Ishiura Hiroyuki、et al.
- Journal Title
  
  Angiogenesis
  
  Volume: 26 Issue: 1 Pages: 37-52
- DOI
  10.1007/s10456-022-09846-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K16677, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19K09473, KAKENHI-PROJECT-20K07417, KAKENHI-PROJECT-20K07422, KAKENHI-PROJECT-21K20985
[Journal Article] The 3′ Pol II pausing at replication-dependent histone genes is regulated by Mediator through Cajal bodies’ association with histone locus bodies2022
- Author(s)
  Suzuki Hidefumi、Abe Ryota、Shimada Miho、Hirose Tomonori、Hirose Hiroko、Noguchi Keisuke、Ike Yoko、Yasui Nanami、Furugori Kazuki、Yamaguchi Yuki、Toyoda Atsushi、Suzuki Yutaka、Yamamoto Tatsuro、Saitoh Noriko、Sato Shigeo、Tomomori-Sato Chieri、Conaway Ronald C.、Conaway Joan W.、Takahashi Hidehisa
- Journal Title
  
  Nature Communications
  
  Volume: 13 Issue: 1 Pages: 2905-2905
- DOI
  10.1038/s41467-022-30632-w
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06482, KAKENHI-PROJECT-22K19466, KAKENHI-ORGANIZER-21H05158, KAKENHI-PLANNED-21H05159, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H03182, KAKENHI-PROJECT-20H03520, KAKENHI-PROJECT-21H02405, KAKENHI-PROJECT-20K06893, KAKENHI-PROJECT-21K19356, KAKENHI-PLANNED-18H05531
[Journal Article] Decoding the diversity of killer immunoglobulin-like receptors by deep sequencing and a high-resolution imputation method2022
- Author(s)
  Sakaue S, Hosomichi K, Hirata J, Nakaoka H, Yamazaki K, Yawata M, Yawata N, Naito T, Umeno J, Kawaguchi T, Matsui T, Motoya S, Suzuki Y, Inoko H, Tajima A, Morisaki T, Matsuda K, Kamatani Y, Yamamoto K, Inoue I, Okada Y
- Journal Title
  
  Cell Genomics
  
  Volume: 2 Issue: 3 Pages: 100101-100101
- DOI
  10.1016/j.xgen.2022.100101
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21705, KAKENHI-PROJECT-20K21834, KAKENHI-PUBLICLY-21H00342, KAKENHI-PROJECT-19H01021, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21K09723
[Journal Article] Spatiotemporal dynamics of clonal selection and diversification in normal endometrial epithelium2022
- Author(s)
  Yamaguchi Manako、Nakaoka Hirofumi、Suda Kazuaki、Yoshihara Kosuke、Ishiguro Tatsuya、Yachida Nozomi、Saito Kyota、Ueda Haruka、Sugino Kentaro、Mori Yutaro、Yamawaki Kaoru、Tamura Ryo、Revathidevi Sundaramoorthy、Motoyama Teiichi、Tainaka Kazuki、Verhaak Roel G. W.、Inoue Ituro、Enomoto Takayuki
- Journal Title
  
  Nature Communications
  
  Volume: 13 Issue: 1 Pages: 943-943
- DOI
  10.1038/s41467-022-28568-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K09822, KAKENHI-PROJECT-20K21246, KAKENHI-PROJECT-20K21647, KAKENHI-PUBLICLY-20H04700, KAKENHI-PROJECT-18H02105, KAKENHI-PROJECT-20H03749, KAKENHI-PROJECT-20H03821, KAKENHI-PROJECT-20K07318, KAKENHI-PROJECT-16H06279
[Journal Article] Whole-genome sequencing analysis and protocol for RNA interference of the endoparasitoid wasp Asobara japonica2022
- Author(s)
  Takumi Kamiyama、Yuko Shimada-Niwa、Hiroyuki Tanaka、Minami Katayama、Takayoshi Kuwabara、Hitoha Mori、Akari Kunihisa、Takehiko Itoh、Atsushi Toyoda、Ryusuke Niwa
- Journal Title
  
  DNA Research
  
  Volume: 29(4) Issue: 4
- DOI
  10.1093/dnares/dsac019
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Runx2 regulates chromatin accessibility to direct the osteoblast program at neonatal stages2022
- Author(s)
  Hojo Hironori, Saito Taku, He Xinjun, Guo Qiuyu, Onodera Shoko, Azuma Toshifumi, Koebis Michinori, Nakao Kazuki, Aiba Atsu, Seki Masahide, Suzuki Yutaka, Okada Hiroyuki, Tanaka Sakae, Chung Ung-il, McMahon Andrew P., Ohba Shinsuke
- Journal Title
  
  Cell Reports
  
  Volume: 40 Issue: 10 Pages: 111315-111315
- DOI
  10.1016/j.celrep.2022.111315
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K05318, KAKENHI-PROJECT-22K10212, KAKENHI-PROJECT-22K10261, KAKENHI-PROJECT-21K19552, KAKENHI-PROJECT-21K19589, KAKENHI-PROJECT-22KK0272, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04952, KAKENHI-PROJECT-20H03885, KAKENHI-PROJECT-17K11932, KAKENHI-PROJECT-21K19883, KAKENHI-PROJECT-23K21494, KAKENHI-PROJECT-21H03146
[Journal Article] Helicobacter pylori genomes reveal Paleolithic human migration to the east end of Asia2022
- Author(s)
  Suzuki Rumiko、Saitou Naruya、Matsuari Osamu、Shiota Seiji、Matsumoto Takashi、Akada Junko、Kinjo Nagisa、Kinjo Fukunori、Teruya Kuniko、Shimoji Makiko、Shiroma Akino、Kato Mototsugu、Satou Kazuhito、Hirano Takashi、Asaka Masahiro、Kryukov Kirill、Moodley Yoshan、Yamaoka Yoshio
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 7 Pages: 104477-104477
- DOI
  10.1016/j.isci.2022.104477
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K07321, KAKENHI-PROJECT-21K07898, KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H03473, KAKENHI-PUBLICLY-21H00346, KAKENHI-PROJECT-23K24133
[Journal Article] Circulating cancer‐associated extracellular vesicles as early detection and recurrence biomarkers for pancreatic cancer2022
- Author(s)
  Yoshioka Yusuke、Shimomura Manami、Saito Keigo、Ishii Hideshi、Doki Yuichiro、Eguchi Hidetoshi、Nakatsura Tetsuya、Itoi Takao、Kuroda Masahiko、Mori Masaki、Ochiya Takahiro
- Journal Title
  
  Cancer Science
  
  Volume: 113 Issue: 10 Pages: 3498-3509
- DOI
  10.1111/cas.15500
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19526, KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925
[Journal Article] Assessing reproducibility of inherited variants detected with short-read whole genome sequencing2022
- Author(s)
  B Pan, L Ren, V Onuchic, M Guan, R Kusko, S Bruinsma, L Trigg , . , Y Gondo, et al.
- Journal Title
  
  Genome Biology
  
  Volume: 23 Issue: 1 Pages: 2-2
- DOI
  10.1186/s13059-021-02569-8
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H00789, KAKENHI-PROJECT-22H04925
[Journal Article] Early prediction of functional prognosis in neurofibromatosis type 2 patients based on genotype-phenotype correlation with targeted deep sequencing2022
- Author(s)
  Yu Teranishi、Satoru Miyawaki、Hirofumi Nakatomi、Kenta Ohara、Hiroki Hongo、Shogo Dofuku、Atsushi Okano、Shunsaku Takayanagi、Takahiro Ota、Jun Yoshimura、Wei Qu、Jun Mitsui、Shinichi Morishita、Shoji Tsuji、Nobuhito Saito
- Journal Title
  
  Scientific Reports
  
  Volume: 12(1) Issue: 1 Pages: 9543-9543
- DOI
  10.1038/s41598-022-13580-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19K09473, KAKENHI-PROJECT-21H03041
[Journal Article] Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions2022
- Author(s)
  Horoiwa Mizuki、Nakamura Takashi、Yuasa Hideaki、Kajitani Rei、Ameda Yosuke、Sasaki Tetsuro、Taninaka Hiroki、Kikuchi Taisei、Yamakita Takehisa、Toyoda Atsushi、Itoh Takehiko、Yasuda Nina
- Journal Title
  
  Frontiers in Marine Science
  
  Volume: 8 Pages: 688139-688139
- DOI
  10.3389/fmars.2021.688139
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J21342, KAKENHI-PROJECT-16H06279
[Journal Article] A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution2022
- Author(s)
  Shimizu M,Hirabuchi, Sugihara Y, Abe A, Takeda T, Kobayashi M, Hiraka Y, Kanzaki E, Oikawa K, Saitoh H, Langner T, Banfield MJ, Kamoun S, Terauchi R
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 27 Pages: 1-10
- DOI
  10.1073/pnas.2116896119
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K14834, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H05681
[Journal Article] Gene Recruitments and Dismissals in the Argonaut Genome Provide Insights into Pelagic Lifestyle Adaptation and Shell-like Eggcase Reacquisition2022
- Author(s)
  Yoshida Masa-aki、Hirota Kazuki、Imoto Junichi、Okuno Miki、Tanaka Hiroyuki、Kajitani Rei、Toyoda Atsushi、Itoh Takehiko、Ikeo Kazuho、Sasaki Takenori、Setiamarga Davin H E
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 14 Issue: 11
- DOI
  10.1093/gbe/evac140
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K12424, KAKENHI-PROJECT-22K06340, KAKENHI-PROJECT-22H04925
[Journal Article] Comprehensive analysis of alternative splicing coupled with nonsense-mediated mRNA decay (AS-NMD) in C. elegans2022
- Author(s)
  Hidehito Kuroyanagi
- Journal Title
  
  生化学
  
  Volume: 94 Issue: 6 Pages: 868-874
- DOI
  10.14952/SEIKAGAKU.2022.940868
- ISSN
  0037-1017
- Year and Date
  2022-12-25
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PUBLICLY-20H04839, KAKENHI-PROJECT-20H03181
[Journal Article] Turnover of mammal sex chromosomes in the Sry-deficient Amami spiny rat is due to male-specific upregulation of Sox92022
- Author(s)
  Terao M, Ogawa Y, Takada S, Kajitani R, Okuno M, Mochimaru Y, Matsuoka K, Itoh T, Toyoda A, Kono T, Jogahara T, Mizushima S, Kuroiwa A.
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 119 Issue: 49
- DOI
  10.1073/pnas.2211574119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05949, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23930
[Journal Article] Genomic architecture and functional unit of mimicry supergene in female limited Batesian mimic Papilio butterflies.2022
- Author(s)
  Komata S, Kajitani R, Itoh T, Fujiwara H.
- Journal Title
  
  Philosophical Transactions of the Royal Society B
  
  Volume: - Issue: 1856 Pages: 20210198-20210198
- DOI
  10.1098/rstb.2021.0198
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J00715, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H00474
[Journal Article] Evolutionary History of Sexual Differentiation Mechanism in Insects2022
- Author(s)
  Yasuhiko Chikami、Miki Okuno、Atsushi Toyoda、Takehiko Itoh、Teruyuki Niimi
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 39 Issue: 7
- DOI
  10.1093/molbev/msac145
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Targeted base editing in the mitochondrial genome of Arabidopsis thaliana2022
- Author(s)
  Issei Nakazato, Miki Okuno, Chang Zhou, Takehiko Itoh, Nobuhiro Tsutsumi, Mizuki Takenaka, Shin-ichi Arimura
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 20 Pages: 1-9
- DOI
  10.1073/pnas.2121177119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K21427, KAKENHI-PROJECT-19KK0391, KAKENHI-PROJECT-22KJ1004
[Journal Article] Nitric oxide‐soluble guanylyl cyclase pathway as a contributor to age‐related memory impairment in Drosophila2022
- Author(s)
 Tonoki Ayako、Nagai Saki、Yu Zhihua、Yue Tong、Lyu Sizhe、Hou Xue、Onuki Kotomi、Yabana Kaho、Takahashi Hiroki、Itoh Motoyuki
- Journal Title
 
 Aging Cell
 
 Volume: 21 Issue: 9
- DOI
 10.1111/acel.13691
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PUBLICLY-22H05485, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K21356
[Journal Article] Identification of Quiescent LGR5+ Stem Cells in the Human Colon2022
- Author(s)
  Ishikawa K, Sugimoto S, Oda M, Fujii M, Toshimitsu K, Sawada K, Shimokawa M, Saito M, Kawasaki K, Ishii R, Taniguchi K, Sato T.
- Journal Title
  
  Gastroenterology.
  
  Volume: 163 Issue: 5 Pages: 1391-1406
- DOI
  10.1053/j.gastro.2022.07.081
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04922, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H04995, KAKENHI-PROJECT-20H03746, KAKENHI-PROJECT-20H03757, KAKENHI-PROJECT-22KJ2666, KAKENHI-PROJECT-20K08340, KAKENHI-PROJECT-21K19540, KAKENHI-PROJECT-15K21775, KAKENHI-PROJECT-20H03758
[Journal Article] Establishing an efficient protoplast transient expression system for investigation of floral thermogenesis in aroids2022
- Author(s)
  Maekawa Haruhiko、Otsubo Miyabi、Sato Mitsuhiko P.、Takahashi Tomoko、Mizoguchi Koichiro、Koyamatsu Daiki、Inaba Takehito、Ito-Inaba Yasuko
- Journal Title
  
  Plant Cell Reports
  
  Volume: 41 Issue: 1 Pages: 263-275
- DOI
  10.1007/s00299-021-02806-1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H02169, KAKENHI-PROJECT-20K21282, KAKENHI-PROJECT-21K15149, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-23K20283
[Journal Article] A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits.2021
- Author(s)
  Hideki Hirakawa, Atsushi Toyoda, Takehiko Itoh, Yutaka Suzuki, Atsushi J. Nagano, Suguru Sugiyama, Yasuyuki Onodera
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 3
- DOI
  10.1093/dnares/dsab004
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Chromatin structure-dependent histone incorporation revealed by a genome-wide deposition assay2021
- Author(s)
  Hiroaki Tachiwana, Mariko Dacher, Kazumitsu Maehara, Akihito Harada, Yosuke Seto, Ryohei Katayama, Yasuyuki Ohkawa, Hiroshi Kimura, Hitoshi Kurumizaka, Noriko Saitoh
- Journal Title
  
  eLife
  
  Volume: 10
- DOI
  10.7554/elife.66290
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-19H04970, KAKENHI-PUBLICLY-20H05393, KAKENHI-PROJECT-19H03158, KAKENHI-PROJECT-20K21398, KAKENHI-PROJECT-20K21554, KAKENHI-PROJECT-20K16370, KAKENHI-PLANNED-18H05527, KAKENHI-PLANNED-18H05534, KAKENHI-PUBLICLY-20H04846, KAKENHI-PUBLICLY-20H05397, KAKENHI-PUBLICLY-21H00232, KAKENHI-PUBLICLY-21H00430, KAKENHI-PROJECT-20H00449, KAKENHI-PROJECT-20H00456, KAKENHI-PROJECT-19H03211, KAKENHI-PROJECT-19H03524, KAKENHI-PROJECT-20H03520, KAKENHI-PROJECT-20K06496, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05531
[Journal Article] Genomic prediction modeling of soybean biomass using UAV-based remote sensing and longitudinal model parameters2021
- Author(s)
  Yusuke Toda, Akito Kaga, Hiromi Kajiya-Kanegae, Tomohiro Hattori, Shuhei Yamaoka, Masanori Okamoto, Hisashi Tsujimoto, Hiroyoshi Iwata
- Journal Title
  
  The Plant Genome
  
  Volume: 14 Issue: 3
- DOI
  10.1002/tpg2.20157
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.2021
- Author(s)
  Satoshi Fujito, Turgut Yigit Akyol, Takuya Mukae, Tadayuki Wako, Ken-ichiro Yamashita, Hikaru Tsukazaki, Hideki Hirakawa, Keisuke Tanaka, Masayoshi Shigyo, et al.
- Journal Title
  
  BMC Genomics
  
  Volume: 22 Issue: 1 Pages: 481-481
- DOI
  10.1186/s12864-021-07803-y
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features2021
- Author(s)
  Rei Kajitani, Hideki Noguchi, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Miki Okuno, Atsushi Toyoda, Tomomi Kuwahara, Tetsuya Hayashi, Takehiko Itoh
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 49 Issue: 22 Pages: e130-e130
- DOI
  10.1093/nar/gkab831
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-20H04125, KAKENHI-PROJECT-21K19211, KAKENHI-PROJECT-20K15769, KAKENHI-PROJECT-16H06279
[Journal Article] Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly2021
- Author(s)
  Okuno, M., Mizushima, S., Kuroiwa, A., and Itoh, T.
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 13 Issue: 11
- DOI
  10.1093/gbe/evab242
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06363, KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-16H06279
[Journal Article] Skin Wound Healing of the Adult Newt, Cynops pyrrhogaster: A Unique Re-Epithelialization and Scarless Model.2021
- Author(s)
  T Ishii, I Takashimizu, MM Casco-Robles, Y Taya, S Yuzuriha, F Toyama, F Maruo, K Kishi, C Chiba
- Journal Title
  
  Biomedicines
  
  Volume: 9 Issue: 12 Pages: 1-33
- DOI
  10.3390/biomedicines9121892
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K22969, KAKENHI-PROJECT-18H04061, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation2021
- Author(s)
  Nakamura Haruna、Aibara Mitsuto、Kajitani Rei、Mrosso Hillary D J、Mzighani Semvua I、Toyoda Atsushi、Itoh Takehiko、Okada Norihiro、Nikaido Masato
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: in press Issue: 8 Pages: 3111-3125
- DOI
  10.1093/molbev/msab084
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20KK0167, KAKENHI-PROJECT-20J13861, KAKENHI-PROJECT-16H06279
[Journal Article] Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer2021
- Author(s)
  Okamoto Takuya、duVerle David、Yaginuma Katsuyuki、Natsume Yasuko、Yamanaka Hitomi、Kusama Daisuke、Fukuda Mayuko、Yamamoto Mayuko、Perraudeau Fanny、Srivastava Upasna、Kashima Yukie、Suzuki Ayako、Kuze Yuuta、Takahashi Yu、Ueno Masashi、Sakai Yoshiharu、Noda Tetsuo、Tsuda Koji、Suzuki Yutaka,Nagayama Satoshi,Yao Ryoji
- Journal Title
  
  Stem Cell Reports
  
  Volume: 16 Issue: 4 Pages: 954-967
- DOI
  10.1016/j.stemcr.2021.02.012
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06333, KAKENHI-PROJECT-18H02684, KAKENHI-PROJECT-18K07217, KAKENHI-PROJECT-19K22570, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21H02770
[Journal Article] Representation learning applications in biological sequence analysis2021
- Author(s)
  Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, Shion Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 19 Pages: 3198-3208
- DOI
  10.1016/j.csbj.2021.05.039
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21J15897, KAKENHI-PROJECT-21K15078, KAKENHI-PROJECT-16H06279
[Journal Article] Neural stem/precursor cells dynamically change their epigenetic landscape to differentially respond to BMP signaling for fate switching during brain development2021
- Author(s)
  Sayako Katada、Jun Takouda、Takumi Nakagawa、Mizuki Honda、Katsuhide Igarashi、Takuya Imamura、Yasuyuki Ohkawa、Shoko Sato、Hitoshi Kurumizaka、Kinichi Nakashima
- Journal Title
  
  Genes and Development
  
  Volume: 35 Issue: 21-22 Pages: 1431-1444
- DOI
  10.1101/gad.348797.121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03138, KAKENHI-PROJECT-21H03604, KAKENHI-PROJECT-20K06875, KAKENHI-PROJECT-16H06279
[Journal Article] Maintenance of neural stem‐progenitor cells by the lysosomal biosynthesis regulators TFEB and TFE3 in the embryonic mouse telencephalon2021
- Author(s)
  Naoya Yuizumi、Yujin Harada、Takaaki Kuniya、Takehiko Sunabori、Masato Koike、Masaki Wakabayashi、Yasushi Ishihama、Yutaka Suzuki、Daichi Kawaguchi、Yukiko Gotoh
- Journal Title
  
  Stem Cells
  
  Volume: － Issue: 7 Pages: 929-944
- DOI
  10.1002/stem.3359
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K07743, KAKENHI-PROJECT-20K08485, KAKENHI-PROJECT-19J22938, KAKENHI-PROJECT-18K06477, KAKENHI-PLANNED-16H06481, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16H06280
[Journal Article] Characterization of Helicobacter pylori tlyA and Its Association with Bacterial Density2021
- Author(s)
  Prakosa Adi Wasis、Miftahussurur Muhammad、Juniastuti Juniastuti、Waskito Langgeng Agung、Doohan Dalla、Fauzia Kartika Afrida、Rezkitha Yudith Annisa Ayu、Sugihartono Titong、Syam Ari Fahrial、Uchida Tomohisa、Yamaoka Yoshio
- Journal Title
  
  Digestive Diseases
  
  Volume: Online ahead of print Issue: 4 Pages: 417-426
- DOI
  10.1159/000518538
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K07436, KAKENHI-PUBLICLY-21H00346
[Journal Article] Neuronal activation modulates enhancer activity of genes for excitatory synaptogenesis through de novo DNA methylation2021
- Author(s)
 Tomonori Kameda、Hideyuki Nakashima、Takumi Takizawa、Fumihito Miura、Takashi Ito、Kinichi Nakashima、Takuya Imamura
- Journal Title
 
 J. Reprod. Dev.
 
 Volume: 67 Issue: 6 Pages: 369-379
- DOI
 10.1262/jrd.2021-106
- NAID
 130008128883
- ISSN
 0916-8818, 1348-4400
- Language
 English
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-19H03138, KAKENHI-PROJECT-16H06279
[Journal Article] PZLAST : an ultra-fast amino acid sequence similarity search server against public metagenomes2021
- Author(s)
  Hiroshi Mori, Hitoshi Ishikawa, Koichi Higashi, Yoshiaki Kato, Toshikazu Ebisuzaki, Ken Kurokawa
- Journal Title
  
  Bioinformatics
  
  Volume: 37 Issue: 21 Pages: 3944-3946
- DOI
  10.1093/bioinformatics/btab492
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation2021
- Author(s)
  Ishino Kyoko、Hasuwa Hidetoshi、Yoshimura Jun、Iwasaki Yuka W、Nishihara Hidenori、Seki Naomi M、Hirano Takamasa、Tsuchiya Marie、Ishizaki Hinako、Masuda Harumi、Kuramoto Tae、Saito Kuniaki、Sakakibara Yasubumi、Toyoda Atsushi、Itoh Takehiko、Siomi Mikiko C、Morishita Shinichi、Siomi Haruhiko
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 49 Issue: 5 Pages: 2700-2720
- DOI
  10.1093/nar/gkab059
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H05466, KAKENHI-PUBLICLY-19H05268, KAKENHI-PLANNED-19H05753, KAKENHI-PROJECT-18H02421, KAKENHI-PROJECT-18J22025, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19424, KAKENHI-PROJECT-20H03175, KAKENHI-PROJECT-16H06276
[Journal Article] MORC3, a novel MIWI2 association partner, as an epigenetic regulator of piRNA dependent transposon silencing in male germ cells2021
- Author(s)
  Kojima-Kita Kanako、Kuramochi-Miyagawa Satomi、Nakayama Manabu、Miyata Haruhiko、Jacobsen Steven E.、Ikawa Masahito、Koseki Haruhiko、Nakano Toru
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 20472-20490
- DOI
  10.1038/s41598-021-98940-7
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-19H05745, KAKENHI-PROJECT-19H03421, KAKENHI-PROJECT-19K16141, KAKENHI-PROJECT-16H06279
[Journal Article] Inflammation-Induced Tumorigenesis and Metastasis2021
- Author(s)
  Sana Hibino, Tetsuro Kawazoe, Hidenori Kasahara, Shinji Itoh, Takatsugu Ishimoto, Mamiko Sakata-Yanagimoto and Koji Taniguchi
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 11 Pages: 5421-5421
- DOI
  10.3390/ijms22115421
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J00502, KAKENHI-PROJECT-15K21775, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279
[Journal Article] Reconstitution of the oocyte transcriptional network with transcription factors2021
- Author(s)
  Hamazaki N, Kyogoku H, Araki H, Miura F, Horikawa C, Hamada N, Shimamoto S, Hikabe O, Nakashima K, Kitajima TS, Ito T, Leitch HG, Katsuhiko Hayashi.
- Journal Title
  
  Nature
  
  Volume: 589 Issue: 7841 Pages: 883-897
- DOI
  10.1038/s41586-020-3027-9
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-16H06524, KAKENHI-ORGANIZER-18H05544, KAKENHI-PLANNED-18H05545, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05549
[Journal Article] Genome-wide association study of gastric cancer- and duodenal ulcer-derived Helicobacter pylori strains reveals discriminatory genetic variations and novel oncoprotein candidates2021
- Author(s)
  Tuan V P、Yahara K、Dung H D Q、Binh T T、Huu T P、Tri T D、Thuan N P M、Khien V V、Trang T T H、Phuc B H、Tshibangu-Kabamba E、Matsumoto T、Akada J、Suzuki R、Okimoto T、Kodama M、Murakami K、Yano H、Fukuyo M、Takahashi N、Kato M、Nishiumi S、Azuma T、Ogura Y、Hayashi T、Toyoda A、Kobayashi I、Yamaoka Y
- Journal Title
  
  Microbial Genomics
  
  Volume: 7 Issue: 11 Pages: 1-17
- DOI
  10.1099/mgen.0.000680
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16707, KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-20K07394, KAKENHI-PROJECT-21K07898, KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Loss of full-length DNA replication regulator Rif1 in two-cell embryos is associated with zygotic transcriptional activation2021
- Author(s)
  Yoshizawa-Sugata Naoko、Yamazaki Satoshi、Mita-Yoshida Kaoru、Ono Tomio、Nishito Yasumasa、Masai Hisao
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 297 Issue: 6 Pages: 101367-101367
- DOI
  10.1016/j.jbc.2021.101367
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-20H05399, KAKENHI-PUBLICLY-21H00264, KAKENHI-PROJECT-20K21410, KAKENHI-PROJECT-20KK0157, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H00463
[Journal Article] CYP2C19 Polymorphisms in Indonesia: Comparison among Ethnicities and the Association with Clinical Outcomes2021
- Author(s)
  Miftahussurur M、Doohan D、Syam AF、Nusi IA、Subsomwong P、Waskito LA、Maulahela H、Akil F、 Uwan WB、Siregar G、Fauzia KA、Rezkitha YAA、Rahman A、Wibawa IDN、Saudale AMJ、Richardo M、 Sugihartono T、Chomariyati A、Bramantoro T、Uchida T、Yamaoka Yoshio
- Journal Title
  
  Biology
  
  Volume: 10 Issue: 4 Pages: 300-300
- DOI
  10.3390/biology10040300
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-19K07436, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Genomics and transcriptomics of the green mussel explain the durability of its byssus2021
- Author(s)
  Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 992-992
- DOI
  10.1038/s41598-021-84948-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18H02261
[Journal Article] Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales and prokaryotes in a coastal ecosystem2021
- Author(s)
 Prodinger Florian、Endo Hisashi、Takano Yoshihito、Li Yanze、Tominaga Kento、Isozaki Tatsuhiro、Blanc-Mathieu Romain、Gotoh Yasuhiro、Hayashi Tetsuya、Taniguchi Etsunori、Nagasaki Keizo、Yoshida Takashi、Ogata Hiroyuki
- Journal Title
 
 FEMS Microbiology Ecology
 
 Volume: 97 Issue: 12
- DOI
 10.1093/femsec/fiab167
- Peer Reviewed / Int'l Joint Research
- Data Source
 KAKENHI-PROJECT-18H02279, KAKENHI-PROJECT-16H06279
[Journal Article] Single-molecule RNA sequencing for simultaneous detection of m6A and 5mC2021
- Author(s)
  Ohshiro Takahito、Konno Masamitsu、Asai Ayumu、Komoto Yuki、Yamagata Akira、Doki Yuichiro、Eguchi Hidetoshi、Ofusa Ken、Taniguchi Masateru、Ishii Hideshi
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 19304-19304
- DOI
  10.1038/s41598-021-98805-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07688, KAKENHI-PROJECT-20K16414, KAKENHI-PROJECT-18KK0251, KAKENHI-PROJECT-19H00852, KAKENHI-PROJECT-20H00541, KAKENHI-PROJECT-21K19526, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-23K21064
[Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021
- Author(s)
  Rai Amit、Hirakawa Hideki、Nakabayashi Ryo、Kikuchi Shinji、Hayashi Koki、Rai Megha、Tsugawa Hiroshi、Nakaya Taiki、Mori Tetsuya、Nagasaki Hideki、Fukushi Runa、Kusuya Yoko、Takahashi Hiroki、Uchiyama Hiroshi、Toyoda Atsushi、Hikosaka Shoko、Goto Eiji、Saito Kazuki、Yamazaki Mami
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 405-405
- DOI
  10.1038/s41467-020-20508-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K19155, KAKENHI-PLANNED-16H06454, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-17K08018, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K16391
[Journal Article] Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis2021
- Author(s)
  Hideaki Yuasa, Rei Kajitani, Yuta Nakamura, Kazuki Takahashi, Miki Okuno, Fumiya Kobayashi, Takahiro Shinoda, Atsushi Toyoda, Yutaka Suzuki, Nalinee Thongtham, Zac Forsman, Omri Bronstein, Davide Seveso, Enrico Montalbetti, Coralie Taquet, Gal Eyal, Nina Yasuda, Takehiko Itoh
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 4
- DOI
  10.1093/dnares/dsab012
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-16H06279
[Journal Article] m 6 A‐mediated alternative splicing coupled with nonsense‐mediated mRNA decay regulates SAM synthetase homeostasis2021
- Author(s)
 Watabe Eichi、Togo‐Ohno Marina、Ishigami Yuma、Wani Shotaro、Hirota Keiko、Kimura‐Asami Mariko、Hasan Sharmin、Takei Satomi、Fukamizu Akiyoshi、Suzuki Yutaka、Suzuki Tsutomu、Kuroyanagi Hidehito
- Journal Title
 
 The EMBO Journal
 
 Volume: 40 Issue: 14
- DOI
 10.15252/embj.2020106434
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PUBLICLY-20H04839, KAKENHI-PROJECT-20H03181, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18H05272
[Journal Article] Targeted base editing in the plastid genome of Arabidopsis thaliana2021
- Author(s)
  Nakazato Issei、Okuno Miki、Yamamoto Hiroshi、Tamura Yoshiko、Itoh Takehiko、Shikanai Toshiharu、Takanashi Hideki、Tsutsumi Nobuhiro、Arimura Shin-ichi
- Journal Title
  
  Nature Plants
  
  Volume: 7 Issue: 7 Pages: 906-913
- DOI
  10.1038/s41477-021-00954-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19202, KAKENHI-PROJECT-19H02927, KAKENHI-PROJECT-19KK0391, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H05680
[Journal Article] Mining RNA‐seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli2021
- Author(s)
  Miyakoshi Masatoshi、Okayama Haruna、Lejars Maxence、Kanda Takeshi、Tanaka Yuki、Itaya Kaori、Okuno Miki、Itoh Takehiko、Iwai Noritaka、Wachi Masaaki
- Journal Title
  
  Molecular Microbiology
  
  Volume: 117 Issue: 1 Pages: 160-178
- DOI
  10.1111/mmi.14814
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03464, KAKENHI-PROJECT-16H06279
[Journal Article] The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes2021
- Author(s)
  Hirota Kazuki、Yoshida Masa-aki、Itoh Takehiko、Toyoda Atsushi、Setiamarga Davin H. E.
- Journal Title
  
  Mitochondrial DNA Part B
  
  Volume: 6 Issue: 4 Pages: 1451-1453
- DOI
  10.1080/23802359.2021.1911710
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K12424, KAKENHI-PROJECT-18K06363, KAKENHI-PROJECT-19K21646, KAKENHI-PROJECT-16H06279
[Journal Article] PZLAST : an ultra-fast sequence similarity search tool implemented on a MIMD processor2021
- Author(s)
  Hitoshi Ishikawa, Hiroshi Mori, Koichi Higashi, Yoshiaki Kato, Tomofumi Sakai, Toshikazu Ebisuzaki, Ken Kurokawa
- Journal Title
  
  2021 Ninth International Symposium on Computing and Networking (CANDAR)
  
  Pages: 102-107
- DOI
  10.1109/candar53791.2021.00021
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Regulated splicing of large exons is linked to phase‐separation of vertebrate transcription factors2021
- Author(s)
  Kawachi Toshihiko、Masuda Akio、Yamashita Yoshihiro、Takeda Jun‐ichi、Ohkawara Bisei、Ito Mikako、Ohno Kinji
- Journal Title
  
  The EMBO Journal
  
  Volume: 40 Issue: 22
- DOI
  10.15252/embj.2020107485
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06058, KAKENHI-PROJECT-18K06483, KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-20K06925, KAKENHI-PROJECT-21K06392, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21H04815, KAKENHI-PROJECT-20H03561
[Journal Article] Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Nurettin Sahin, Akio Tani
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 12 Pages: 740610-740610
- DOI
  10.3389/fmicb.2021.740610
- NAID
  120007170513
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21H02105
[Journal Article] De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing2021
- Author(s)
  Hitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 1
- DOI
  10.1093/dnares/dsaa029
- NAID
  120007186927
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] A global phylogenetic analysis of Japanese tonsil-derived Epstein-Barr virus strains using viral whole-genome cloning and long-read sequencing2021
- Author(s)
  Yajima Misako、Kakuta Risako、Saito Yutaro、Kitaya Shiori、Toyoda Atsushi、Ikuta Kazufumi、Yasuda Jun、Ohta Nobuo、Kanda Teru
- Journal Title
  
  Journal of General Virology
  
  Volume: 102 Issue: 3
- DOI
  10.1099/jgv.0.001549
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K09184, KAKENHI-PROJECT-20K08213, KAKENHI-PROJECT-19H03795, KAKENHI-PROJECT-17K07193, KAKENHI-PROJECT-18K10057, KAKENHI-PROJECT-16H06279
[Journal Article] Pepsinogen and Serum IgG Detection Is a Valuable Diagnostic Method for Helicobacter pylori Infection in a Low-Prevalence Country: A Report from Sri Lanka2021
- Author(s)
  Doohan Dalla、Fauzia Kartika Afrida、Rathnayake Jeewantha、Lamawansa Meegahalande Durage、Waskito Langgeng Agung、Tuan Vo Phuoc、Dashdorj Azzaya、Kabamba Evariste Tshibangu、Phuc Bui Hoang、Ansari Shamshul、Akada Junko、Matsumoto Takashi、Uchida Tomohisa、Matsuhisa Takeshi、Yamaoka Yoshio
- Journal Title
  
  Diagnostics
  
  Volume: 11 Issue: 8 Pages: 1364-1364
- DOI
  10.3390/diagnostics11081364
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Mussel biology: from the byssus to ecology and physiology, including microplastic ingestion and deep-sea adaptations2021
- Author(s)
  Koji Inoue, Yuri Onitsuka, Tomoko Koito
- Journal Title
  
  Fisheries Science
  
  Volume: 87 Issue: 6 Pages: 761-771
- DOI
  10.1007/s12562-021-01550-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H02261, KAKENHI-PROJECT-19K06844, KAKENHI-PROJECT-16H06279
[Journal Article] Jonckheere-Terpstra-Kendall-based non-parametric analysis of temporal differential gene expression2021
- Author(s)
  Iuchi Hitoshi、Hamada Michiaki
- Journal Title
  
  NAR Genomics and Bioinformatics
  
  Volume: 3 Issue: 1
- DOI
  10.1093/nargab/lqab021
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05879, KAKENHI-PROJECT-17K20032, KAKENHI-PROJECT-16H06279
[Journal Article] Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency2021
- Author(s)
  Katsura Y, Ikemura T, Kajitani R, Toyoda A, Itoh T, Ogata M, Miura I, Wada K, Wada Y, and Satta Y
- Journal Title
  
  Life Science Alliance
  
  Volume: - Issue: 5 Pages: e202000905-e202000905
- DOI
  10.26508/lsa.202000905
- NAID
  120007153083
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06788, KAKENHI-PROJECT-18K14766, KAKENHI-PROJECT-16H06279
[Journal Article] A protocol for efficient CRISPR-Cas9-mediated knock-in in colorectal cancer patient-derived organoids2021
- Author(s)
  Okamoto Takuya、Natsume Yasuko、Yamanaka Hitomi、Fukuda Mayuko、Yao Ryoji
- Journal Title
  
  STAR Protocols
  
  Volume: 2 Issue: 4 Pages: 100780-100780
- DOI
  10.1016/j.xpro.2021.100780
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06333, KAKENHI-PROJECT-21H02770, KAKENHI-PROJECT-16H06279
[Journal Article] Insights into the genomic evolution of insects from cricket genomes2021
- Author(s)
  Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen A. Barnett, Sumihare Noji, Taro Mito & Cassandra G. Extavour
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 733-733
- DOI
  10.1038/s42003-021-02197-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06184, KAKENHI-PROJECT-19K06691, KAKENHI-PROJECT-21K06121, KAKENHI-PROJECT-16H06279
[Journal Article] Mutation Analysis of Radioresistant Early-Stage Cervical Cancer2021
- Author(s)
  Oike Tae、Sekiguchi Yoshihito、Yoshimoto Yuya、Oike Takahiro、Ando Ken、Gu Wenchao、Sasaki Yasushi、Tokino Takashi、Iwase Akira、Ohno Tatsuya
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 23 Issue: 1 Pages: 51-51
- DOI
  10.3390/ijms23010051
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-16H06279
[Journal Article] PRDX1 is essential for the viability and maintenance of reactive oxygen species in chicken DT402021
- Author(s)
  Moriwaki Takahito、Yoshimura Akari、Tamari Yuki、Sasanuma Hiroyuki、Takeda Shunichi、Seki Masayuki、Tano Keizo
- Journal Title
  
  Genes and Environment
  
  Volume: 43 Issue: 1 Pages: 1-8
- DOI
  10.1186/s41021-021-00211-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H04267, KAKENHI-PROJECT-18K11640, KAKENHI-PROJECT-19K07647, KAKENHI-PROJECT-20K17055, KAKENHI-PROJECT-16H06279
[Journal Article] Helicobacter pylori in the Indonesian Malay’s descendants might be imported from other ethnicities2021
- Author(s)
  Syam Ari Fahrial、Waskito Langgeng Agung、Rezkitha Yudith Annisa Ayu、Simamora Rentha Monica、Yusuf Fauzi、Danchi Kanserina Esthera、Bakry Ahmad Fuad、Arnelis、Mulya Erwin、Siregar Gontar Alamsyah、Sugihartono Titong、Maulahela Hasan、Doohan Dalla、Miftahussurur Muhammad、Yamaoka Yoshio
- Journal Title
  
  Gut Pathogens
  
  Volume: 13 Issue: 1 Pages: 36-36
- DOI
  10.1186/s13099-021-00432-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] tRIP-seq Reveals Repression of Premature Polyadenylation by Co-Transcriptional FUS-U1 snRNP Assembly2020
- Author(s)
  Akio Masuda, Toshihiko Kawachi, Jun-Ichi Takeda, Bisei Ohkawara, Mikako Ito, Kinji Ohno
- Journal Title
  
  EMBO Rep.
  
  Volume: - Issue: 5
- DOI
  10.15252/embr.201949890
- NAID
  120006884959
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07094, KAKENHI-PROJECT-18K06058, KAKENHI-PROJECT-18K06483, KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K06925, KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-18K14684
[Journal Article] Essentiality of CENP-A Depends on Its Binding Mode to HJURP.2020
- Author(s)
  Tetsuya Hori , JingHui Cao , Kohei Nishimura , Mariko Ariyoshi , Yasuhiro Arimura , Hitoshi Kurumizaka , Tatsuo Fukagawa
- Journal Title
  
  Cell reports
  
  Volume: 33 Issue: 7 Pages: 108388-108388
- DOI
  10.1016/j.celrep.2020.108388
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06611, KAKENHI-PROJECT-20K21395, KAKENHI-PROJECT-20K21423, KAKENHI-PROJECT-17H06167, KAKENHI-PLANNED-18H05534, KAKENHI-PUBLICLY-20H05389, KAKENHI-PROJECT-20H03236, KAKENHI-PROJECT-18K06084, KAKENHI-PROJECT-16H06279
[Journal Article] E-test versus agar dilution for antibiotic susceptibility testing of Helicobacter pylori: a comparison study2020
- Author(s)
  Miftahussurur Muhammad、Fauzia Kartika Afrida、Nusi Iswan Abbas、Setiawan Poernomo Boedi、Syam Ari Fahrial、Waskito Langgeng Agung、Doohan Dalla、Ratnasari Neneng、Khomsan Ali、Adnyana I. Ketut、Akada Junko、Yamaoka Yoshio
- Journal Title
  
  BMC Research Notes
  
  Volume: 13 Issue: 1 Pages: 22-22
- DOI
  10.1186/s13104-019-4877-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-16H06279
[Journal Article] Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench2020
- Author(s)
  Han Yong-Woon、Kajitani Rei、Morimoto Hiroya、Palihati Maierdan、Kurokawa Yumiko、Ryusui Rie、Argunhan Bilge、Tsubouchi Hideo、Abe Fumiyoshi、Kajiwara Susumu、Iwasaki Hiroshi、Itoh Takehiko
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 9 Issue: 47
- DOI
  10.1128/mra.00827-20
- NAID
  120007124437
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H02371, KAKENHI-PROJECT-18K05397, KAKENHI-PROJECT-18H03985, KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-20K15713
[Journal Article] Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera.2020
- Author(s)
  Nikaido M, Kondo S, Zhang Z, Wu J, Nishihara H, Niimura Y, Suzuki S, Touhara K, Suzuki Y, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Sugano S, Yoneda M, Kai C
- Journal Title
  
  DNA Res
  
  Volume: 27 Issue: 4
- DOI
  10.1093/dnares/dsaa021
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06359, KAKENHI-PROJECT-18F18385, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H03307
[Journal Article] Analysis of the Mitochondrial Genomes of Japanese Wolf Specimens in the Siebold Collection, Leiden2020
- Author(s)
  Matsumura Shuichi、Terai Yohey、Hongo Hitomi、Ishiguro Naotaka
- Journal Title
  
  Zoological Science
  
  Volume: 38 Issue: 1 Pages: 60-66
- DOI
  10.2108/zs200019
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-18H05444, KAKENHI-PUBLICLY-19H05343, KAKENHI-PROJECT-18H00735, KAKENHI-PROJECT-17K01193, KAKENHI-PROJECT-18K06361, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H00534, KAKENHI-PROJECT-20K01104
[Journal Article] Gastric microbiota and Helicobacter pylori in Indonesian population2020
- Author(s)
  Miftahussurur Muhammad、Waskito Langgeng Agung、El‐Serag Hashem B、Ajami Nadim J.、Nusi Iswan Abbas、Syam Ari Fahrial、Matsumoto Takashi、Rezkitha Yudith Annisa Ayu、Doohan Dalla、Fauzia Kartika Afrida、Maimunah Ummi、Sugihartono Titong、Uchida Tomohisa、Yamaoka Yoshio
- Journal Title
  
  Helicobacter
  
  Volume: 25 Issue: 4
- DOI
  10.1111/hel.12695
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-18K16182, KAKENHI-PROJECT-16H06279
[Journal Article] Modeling of early neural development in vitro by direct neurosphere formation culture of chimpanzee induced pluripotent stem cells2020
- Author(s)
  Ryunosuke Kitajima, Risako Nakai, Takuya Imamura, Tomonori Kameda, Daiki Kozuka, Hirohisa Hirai, Haruka Ito, Hiroo Imai, Masanori Imamura
- Journal Title
  
  Stem Cell Research
  
  Volume: 44 Pages: 101749-101749
- DOI
  10.1016/j.scr.2020.101749
- NAID
  120006813300
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06864, KAKENHI-PROJECT-19K22368, KAKENHI-PROJECT-19K22452, KAKENHI-PROJECT-19H03138, KAKENHI-PROJECT-18J21142, KAKENHI-PROJECT-16H06279
[Journal Article] Genome-wide association meta-analysis identifies GP2 gene risk variants for pancreatic cancer2020
- Author(s)
  Lin Y, Nakatochi M, Hosono Y, Ito H, Kamatani Y, Inoko A, Sakamoto H, Kinoshita F, Kobayashi Y, Ishii H, Yamaji T,et al.
- Journal Title
  
  Nature Communications
  
  Volume: 11 Issue: 1 Pages: 3175-3175
- DOI
  10.1038/s41467-020-16711-w
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K10655, KAKENHI-PROJECT-19K10659, KAKENHI-PROJECT-18KK0251, KAKENHI-PROJECT-18H02894, KAKENHI-PROJECT-18H04053, KAKENHI-PROJECT-18H02624, KAKENHI-PROJECT-19K22543, KAKENHI-PROJECT-19K22658, KAKENHI-PROJECT-19K17962, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-16H06279
[Journal Article] Intellectual disability-associated gain-of-function mutations in CERT1 that encodes the ceramide transport protein CERT2020
- Author(s)
  Murakami Hiroaki、Tamura Norito、Enomoto Yumi、Shimasaki Kentaro、Kurosawa Kenji、Hanada Kentaro
- Journal Title
  
  PLOS ONE
  
  Volume: 15 Issue: 12 Pages: e0243980-e0243980
- DOI
  10.1371/journal.pone.0243980
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J01972, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06417
[Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression2020
- Author(s)
  Ito Yoichiro、Terai Goro、Ishigami Misa、Hashiba Noriko、Nakamura Yasuyuki、Bamba Takahiro、Kumokita Ryota、Hasunuma Tomohisa、Asai Kiyoshi、Ishii Jun、Kondo Akihiko
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 48 Issue: 22 Pages: 13000-13012
- DOI
  10.1093/nar/gkaa1066
- NAID
  120006954873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K15734, KAKENHI-PROJECT-16H06279
[Journal Article] The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation2020
- Author(s)
  Ito Kei K.、Watanabe Koki、Kitagawa Daiju
- Journal Title
  
  Non-Coding RNA
  
  Volume: 6 Issue: 1 Pages: 13-13
- DOI
  10.3390/ncrna6010013
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-WRAPUP-19H05439, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H05651
[Journal Article] Local Chromatin Motion and Transcription2020
- Author(s)
  Babokhov Michael、Hibino Kayo、Itoh Yuji、Maeshima Kazuhiro
- Journal Title
  
  Journal of Molecular Biology
  
  Volume: 432 Issue: 3 Pages: 694-700
- DOI
  10.1016/j.jmb.2019.10.018
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K23735, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-19H05273
[Journal Article] Multiomics investigation revealing the characteristics of HIV-1-infected cells in vivo2020
- Author(s)
  Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
- Journal Title
  
  Cell Reports
- Description
  未定 in press
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Serum pepsinogens as a gastric cancer and gastritis biomarker in South and Southeast Asian populations2020
- Author(s)
  Miftahussurur Muhammad、Waskito Langgeng Agung、Aftab Hafeza、Vilaichone Ratha-korn、Subsomwong Phawinee、Nusi Iswan Abbas、Syam Ari Fahrial、Ratanachu-ek Thawee、Doohan Dalla、Siregar Gontar、Rezkitha Yudith Annisa Ayu、Fauzia Kartika Afrida、Mahachai Varocha、Yamaoka Yoshio
- Journal Title
  
  PLOS ONE
  
  Volume: 15 Issue: 4 Pages: e0230064-e0230064
- DOI
  10.1371/journal.pone.0230064
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica.2020
- Author(s)
  Okuno M, Miyamoto M, Itoh T, Seki M, Suzuki Y, Mizushima S, Kuroiwa A.
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 20073-20073
- DOI
  10.1038/s41598-020-77094-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06363, KAKENHI-PROJECT-18K19317, KAKENHI-PROJECT-16H06279
[Journal Article] Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels.2020
- Author(s)
  Higashino T, Morimoto K, Nakaoka H, Toyoda Y, Kawamura Y, Shimizu S, Nakamura T, Hosomichi K, Nakayama A, Ooyama K, Ooyama H, Shimizu T, Ueno M, Ito T, Tamura T, Naito M, Nakashima H, Kawaguchi M, Takao M, Kawai Y, Osada N, Ichida K, Yamamoto K, Suzuki H, Shinomiya N, Inoue I, Takada T, Matsuo H.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 79(1) Issue: 1 Pages: 164-166
- DOI
  10.1136/annrheumdis-2019-216044
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KK0247, KAKENHI-PUBLICLY-19H05344, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H04128, KAKENHI-PROJECT-18H02685, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05511
[Journal Article] A genome database for a Japanese population of the larvacean Oikopleura dioica.2020
- Author(s)
  Wang, K., Tomura, R., Chen, W., Kiyooka, M., Ishizaki, H., Aizu, T., Minakuchi, Y., Seki, Yutaka Suzuki, M., Omotezako, T., Suyama, R., Masunaga, A., Plessy, C., Luscombe, N.M., Dantec, C., Lemaire, P., Itoh, T., Toyoda, A., Nishida, H., and Onuma, T.A.
- Journal Title
  
  Dev. Growth Differ.
  
  Volume: 62 Issue: 6 Pages: 450-461
- DOI
  10.1111/dgd.12689
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17KT0023, KAKENHI-PROJECT-18K06256, KAKENHI-PUBLICLY-18H04763, KAKENHI-PROJECT-19H03234, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-20H05946
[Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H282020
- Author(s)
  Nakamura K., Murase K., Sato MP., Toyoda A., Itoh T., Mainil JG., Pierard D., Yoshino S., Kimata K., Isobe J., Seto K., Etoh Y., Narimatsu H., Saito S., Yatsuyanagi J., Lee K., Iyoda S., Ohnishi M., Ooka T., Gotoh Y., Ogura Y., Hayashi T.
- Journal Title
  
  Microbial Genomics
  
  Volume: 6 Issue: 1
- DOI
  10.1099/mgen.0.000323
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K07116, KAKENHI-PROJECT-16H06279
[Journal Article] Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In?Vivo2020
- Author(s)
  Aso Hirofumi、Nagaoka Shumpei、Kawakami Eiryo、Ito Jumpei、Islam Saiful、Tan Benjy Jek Yang、Nakaoka Shinji、Ashizaki Koichi、Shiroguchi Katsuyuki、Suzuki Yutaka、Satou Yorifumi、Koyanagi Yoshio、Sato Kei
- Journal Title
  
  Cell Reports
  
  Volume: 32 Issue: 2 Pages: 107887-107887
- DOI
  10.1016/j.celrep.2020.107887
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K15767, KAKENHI-PROJECT-18KK0447, KAKENHI-INTERNATIONAL-16K21723, KAKENHI-PLANNED-18H05411, KAKENHI-PUBLICLY-19H04826, KAKENHI-PROJECT-18H02662, KAKENHI-PROJECT-20H03724, KAKENHI-PROJECT-19J01713, KAKENHI-PROJECT-19J22802, KAKENHI-PROJECT-20J23299, KAKENHI-PROJECT-18KK0230, KAKENHI-PROJECT-16H06279, KAKENHI-ORGANIZER-16H06429
[Journal Article] Complete Genome Sequence Data of Tumorigenic Rhizobium vitis Strain VAT03-9, a Causal Agent of Grapevine Crown Gall Disease2020
- Author(s)
  Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
- Journal Title
  
  Molecular Plant-Microbe Interactions®
  
  Volume: 33 Issue: 11 Pages: 1280-1282
- DOI
  10.1094/mpmi-07-20-0180-a
- NAID
  120007004826
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K20572
[Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs2020
- Author(s)
  Udagawa Chihiro、Sasaki Yasushi、Tanizawa Yasuhiro、Suemizu Hiroshi、Ohnishi Yasuyuki、Nakamura Yasukazu、Tokino Takashi、Zembutsu Hitoshi
- Journal Title
  
  PLOS ONE
  
  Volume: 15 Issue: 9 Pages: e0239614-e0239614
- DOI
  10.1371/journal.pone.0239614
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin2020
- Author(s)
  Montgomery SA, Tanizawa Y, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Drouard L, Ekker H, Houng SF, Kohchi T, Lin SS, Liu LYD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F.
- Journal Title
  
  Current Biology
  
  Volume: 30 Issue: 4 Pages: 573-588
- DOI
  10.1016/j.cub.2019.12.015
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06285, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-19H04860, KAKENHI-PLANNED-19H05675, KAKENHI-PROJECT-17H07424
[Journal Article] Two auxiliary factors promote Dmc1-driven DNA strand exchange via stepwise mechanisms2020
- Author(s)
  Tsubouchi Hideo、Argunhan Bilge、Ito Kentaro、Takahashi Masayuki、Iwasaki Hiroshi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 115 Issue: 22 Pages: 17419-17419
- DOI
  10.1073/pnas.1917419117
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PROJECT-18H03985, KAKENHI-PROJECT-20K15713
[Journal Article] Targeted deep sequencing of DNA from multiple tissue types improves the diagnostic rate and reveals a highly diverse phenotype of mosaic neurofibromatosis type 2.2020
- Author(s)
  Teranishi Y.、Miyawaki S.、Hongo H.、Dofuku S.、Okano A.、Takayanagi S.、Ota T.、Yoshimura J.、Qu W.、Mitsui J.、Nakatomi H.、Morishita S.、Tsuji S.、Saito N.
- Journal Title
  
  J Med Genet
  
  Volume: なし Issue: 10 Pages: 701-711
- DOI
  10.1136/jmedgenet-2020-106973
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17H04301, KAKENHI-PROJECT-19K24023, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K17954, KAKENHI-PROJECT-19K09473
[Journal Article] Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea2020
- Author(s)
  Ishimaru Kai、Sasaki Mari、Narimatsu Hiroshi、Arimizu Yoko、Gotoh Yasuhiro、Nakamura Keiji、Hayashi Tetsuya、Ogura Yoshitoshi
- Journal Title
  
  Open Forum Infectious Diseases
  
  Volume: 7 Issue: 1
- DOI
  10.1093/ofid/ofaa021
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] MeCP2 Levels Regulate the 3D Structure of Heterochromatic Foci in Mouse Neurons2020
- Author(s)
  Ito-Ishida Aya、Baker Steven A.、Sillitoe Roy V.、Sun Yaling、Zhou Jian、Ono Yukiteru、Iwakiri Junichi、Yuzaki Michisuke、Zoghbi Huda Y.
- Journal Title
  
  The Journal of Neuroscience
  
  Volume: 40 Issue: 45 Pages: 8746-8766
- DOI
  10.1523/jneurosci.1281-19.2020
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K12041, KAKENHI-PUBLICLY-20H05071, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H05628
[Journal Article] Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere2020
- Author(s)
  Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
- Journal Title
  
  Molecular Plant-Microbe Interactions®
  
  Volume: 33 Issue: 11 Pages: 1283-1285
- DOI
  10.1094/mpmi-07-20-0182-a
- NAID
  120007004828
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K20572
[Journal Article] The validation of the Helicobacter pylori CagA typing by immunohistochemistry: nationwide application in Indonesia2020
- Author(s)
  Miftahussurur Muhammad、Doohan Dalla、Syam Ari Fahrial、Nusi Iswan Abbas、Waskito Langgeng Agung、Fauzia Kartika Afrida、Rezkitha Yudith Annisa Ayu、Dewayani Astri、I'tishom Reny、Maulahela Hasan、Uchida Tomohisa、Yamaoka Yoshio
- Journal Title
  
  Acta Histochemica
  
  Volume: 122 Issue: 6 Pages: 151594-151594
- DOI
  10.1016/j.acthis.2020.151594
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07436, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils2020
- Author(s)
  Kinoshita-Daitoku Ryo、Ogura Yoshitoshi、Kiga Kotaro、Maruyama Fumito、Kondo Tomoyo、Nakagawa Ichiro、Hayashi Tetsuya、Mimuro Hitomi
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 9 Issue: 18
- DOI
  10.1128/mra.00105-20
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15149, KAKENHI-PROJECT-16H06279
[Journal Article] Discovery of the Gene Encoding a Novel Small Serum Protein (SSP) of Protobothrops flavoviridis and the Evolution of SSPs2020
- Author(s)
  Inamaru Kento、Takeuchi Ami、Maeda Marie、Shibata Hiroki、Fukumaki Yasuyuki、Oda-Ueda Naoko、Hattori Shosaku、Ohno Motonori、Chijiwa Takahito
- Journal Title
  
  Toxins
  
  Volume: 12 Issue: 3 Pages: 177-177
- DOI
  10.3390/toxins12030177
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H02498, KAKENHI-PROJECT-16H06279
[Journal Article] Role of BgaA as a pneumococcal virulence factor elucidated by molecular evolutionary analysis.2020
- Author(s)
  Yamaguchi M, Takemura M, Higashi K, Goto K, Hirose Y, Sumitomo T, Nakata M, Uzawa N, Kawabata S.
- Journal Title
  
  Front Microbiol
  
  Volume: 11 Pages: 582437-582437
- DOI
  10.3389/fmicb.2020.582437
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22715, KAKENHI-PROJECT-20K21675, KAKENHI-PROJECT-20K18474, KAKENHI-PROJECT-20K23053, KAKENHI-PROJECT-17K11958, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H03825, KAKENHI-PROJECT-19K22710
[Journal Article] Targeted gene disruption of ATP synthases 6‐1 and 6‐2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs2020
- Author(s)
  Arimura Shin‐ichi、Ayabe Hiroki、Sugaya Hajime、Okuno Miki、Tamura Yoshiko、Tsuruta Yu、Watari Yuta、Yanase Shungo、Yamauchi Takaki、Itoh Takehiko、Toyoda Atsushi、Takanashi Hideki、Tsutsumi Nobuhiro
- Journal Title
  
  The Plant Journal
  
  Volume: 104 Issue: 6 Pages: 1459-1471
- DOI
  10.1111/tpj.15041
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19202, KAKENHI-PROJECT-19KK0391, KAKENHI-PROJECT-19H02927, KAKENHI-PROJECT-18K05570, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H05680
[Journal Article] A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific2020
- Author(s)
  Wada Naohisa、Yuasa Hideaki、Kajitani Rei、Gotoh Yasuhiro、Ogura Yoshitoshi、Yoshimura Dai、Toyoda Atsushi、Tang Sen-Lin、Higashimura Yukihiro、Sweatman Hugh、Forsman Zac、Bronstein Omri、Eyal Gal、Thongtham Nalinee、Itoh Takehiko、Hayashi Tetsuya、Yasuda Nina
- Journal Title
  
  Microbiome
  
  Volume: 8 Issue: 1 Pages: 123-123
- DOI
  10.1186/s40168-020-00880-3
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H04996, KAKENHI-PROJECT-18J23317, KAKENHI-PROJECT-16H06279
[Journal Article] Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad512020
- Author(s)
  Ito K, Murayama Y, Kurokawa Y, Kanamaru S, Kokabu Y, Maki T, Argunhan B, Tsubouchi H, Ikeguchi M, Takahashi M, Iwasaki H*
- Journal Title
  
  Nat Commun
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Journal Article] Fruit setting rewires central metabolism via gibberellin cascades2020
- Author(s)
  Shinozaki Yoshihito et al.
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 117 Issue: 38 Pages: 23970-23981
- DOI
  10.1073/pnas.2011859117
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K06043, KAKENHI-PROJECT-19K23672, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H04994
[Journal Article] Comprehensive Investigation of RNF213 Nonsynonymous Variants Associated with Intracranial Artery Stenosis2020
- Author(s)
  Hongo H, Miyawaki S, Imai H, Shimizu M, Yagi S, Mitsui J, Ishiura H, Yoshimura J, Doi K, Qu W, Teranishi Y, Okano A, Ono H, Nakatomi H, Shimizu T, Morishita S, Tsuji S, and Saito N
- Journal Title
  
  Scientific reports
  
  Volume: 10(1) Issue: 1 Pages: 11942-11942
- DOI
  10.1038/s41598-020-68888-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K09473, KAKENHI-PROJECT-17H04301, KAKENHI-PROJECT-19J12355, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence Data of Nonpathogenic Strain Rhizobium vitis VAR03-1, a Biological Control Agent for Grapevine Crown Gall Disease2020
- Author(s)
  Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
- Journal Title
  
  Molecular Plant-Microbe Interactions®
  
  Volume: 33 Issue: 12 Pages: 1451-1453
- DOI
  10.1094/mpmi-07-20-0181-a
- NAID
  120007004827
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20K20572
[Journal Article] mRNA Editing, Processing, and Quality Control in Caenorhabditis elegans2020
- Author(s)
  Joshua A. Arribere, Hidehito Kuroyanagi, and Heather A. Hundley
- Journal Title
  
  Genetics
  
  Volume: 215 Issue: 3 Pages: 1-39
- DOI
  10.1534/genetics.119.301807
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03633, KAKENHI-PROJECT-16H06279
[Journal Article] Biofilm Formation and Antibiotic Resistance Phenotype of Helicobacter pylori Clinical Isolates2020
- Author(s)
  Fauzia Kartika Afrida、Miftahussurur Muhammad、Syam Ari Fahrial、Waskito Langgeng Agung、Doohan Dalla、Rezkitha Yudith Annisa Ayu、Matsumoto Takashi、Tuan Vo Phuoc、Akada Junko、Yonezawa Hideo、Kamiya Shigeru、Yamaoka Yoshio
- Journal Title
  
  Toxins
  
  Volume: 12 Issue: 8 Pages: 473-473
- DOI
  10.3390/toxins12080473
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K09890, KAKENHI-PROJECT-18K16182, KAKENHI-PROJECT-16H06279
[Journal Article] A common variant of LDL receptor related protein 2 (LRP2) gene is associated with gout susceptibility: a meta-analysis in a Japanese population.2020
- Author(s)
  Akashi A, Nakayama A, Kamatani Y, Higashino T, Shimizu S, Kawamura Y, Imoto M, Naito M, Hishida A, Kawaguchi M, Takao M, Matsuo M, Takada T, Ichida K, Ooyama H, Shinomiya N, Matsuo H.
- Journal Title
  
  Hum Cell.
  
  Volume: 33 Issue: 2 Pages: 303307-303307
- DOI
  10.1007/s13577-019-00318-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H04128, KAKENHI-PROJECT-18H02685, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18KK0247, KAKENHI-PROJECT-20H00568
[Journal Article] Characterization of a novel Helicobacter pylori East Asian-type CagA ELISA for detecting patients infected with various cagA genotypes2020
- Author(s)
  Doohan D, Miftahussurur M, Matsuo Y, Kido Y, Akada J, Matsuhisa T, Yee TT, Htet K, Aftab H, Vilaichone RK, Mahachai V, Ratanachu-Ek T, Tshering L, Waskito LA, Fauzia KA, Uchida T, Syam AF, Rezkitha YAA, Yamaoka Y
- Journal Title
  
  Medcal Microbiology and Immunology
  
  Volume: 209 Issue: 1 Pages: 29-40
- DOI
  10.1007/s00430-019-00634-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K09353, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-16H06279
[Journal Article] Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria2019
- Author(s)
  Yu ZHENG, Ayana Saitou, Chiung-Mei Wang, Atsushi Toyoda, Yohei Minakuchi, Yuji Sekiguchi, Kenji Ueda, Hideaki Takano, Yasuteru Sakai, Keietsu Abe, Akira Yokota and Shuhei Yabe
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 10 Pages: 893-893
- DOI
  10.3389/fmicb.2019.00893
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18K05406
[Journal Article] Streptococcus pneumoniae evades host cell phagocytosis and limits host mortality through its cell wall anchoring protein PfbA.2019
- Author(s)
  Yamaguchi M, Hirose Y, Takemura M, Ono M, Sumitomo T, Nakata M, Terao Y, Kawabata S.
- Journal Title
  
  Front Cell Infect Microbiol
  
  Volume: 9 Pages: 301-301
- DOI
  10.3389/fcimb.2019.00301
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K11958, KAKENHI-PROJECT-19K22710, KAKENHI-PROJECT-19K22715, KAKENHI-PROJECT-16H05847, KAKENHI-PROJECT-17H04369, KAKENHI-PROJECT-17H05103, KAKENHI-PROJECT-17K11610, KAKENHI-PROJECT-17K11666, KAKENHI-PROJECT-18K19643, KAKENHI-PROJECT-15KK0306, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H03825
[Journal Article] Effective therapeutic regimens in two South Asian countries with high resistance to major Helicobacter pylori antibiotics2019
- Author(s)
  Miftahussurur Muhammad、Aftab Hafeza、Shrestha Pradeep Krishna、Sharma Rabi Prakash、Subsomwong Phawinee、Waskito Langgeng Agung、Doohan Dalla、Fauzia Kartika Afrida、Yamaoka Yoshio
- Journal Title
  
  Antimicrobial Resistance & Infection Control
  
  Volume: 8 Issue: 1 Pages: 40-40
- DOI
  10.1186/s13756-019-0482-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Analysis of risks of gastric cancer by gastric mucosa among Indonesian ethnic groups2019
- Author(s)
  Miftahussurur Muhammad、Waskito Langgeng Agung、Syam Ari Fahrial、et al.、Yamaoka Yoshio
- Journal Title
  
  PLOS ONE
  
  Volume: 14 Issue: 5 Pages: e0216670-e0216670
- DOI
  10.1371/journal.pone.0216670
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-16H06279
[Journal Article] Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean2019
- Author(s)
  Hashihama Fuminori、Suwa Shuhei、Kanda Jota、Ehama Makoto、Sakuraba Ryousuke、Kinouchi Shinko、Sato Mitsuhide、Yamaguchi Tamaha、Saito Hiroaki、Ogura Yoshitoshi、Hayashi Tetsuya、Mori Hiroshi、Kurokawa Ken、Suzuki Shotaro、Hamasaki Koji
- Journal Title
  
  Progress in Oceanography
  
  Volume: 176 Pages: 102115-102115
- DOI
  10.1016/j.pocean.2019.05.007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02562, KAKENHI-PROJECT-15H02802, KAKENHI-PROJECT-16H06279
[Journal Article] Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP2019
- Author(s)
  Yoshimura Dai、Kajitani Rei、Gotoh Yasuhiro、Katahira Katsuyuki、Okuno Miki、Ogura Yoshitoshi、Hayashi Tetsuya、Itoh Takehiko
- Journal Title
  
  Microbial Genomics
  
  Volume: 5 Issue: 5
- DOI
  10.1099/mgen.0.000261
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05979, KAKENHI-PROJECT-16H06279
[Journal Article] Whole-exome sequencing in a Japanese pedigree implicates a rare non-synonymous single-nucleotide variant in BEST3 as a candidate for mandibular prognathism.2019
- Author(s)
  Kajii TS, Oka A, Saito F, Mitsui J, Iida J.
- Journal Title
  
  Bone.
  
  Volume: 122 Pages: 193-198
- DOI
  10.1016/j.bone.2019.03.004
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K08802, KAKENHI-PROJECT-17K11949
[Journal Article] Tandem paired nicking promotes precise genome editing with scarce interference by p532019
- Author(s)
  Hyodo T, Rahman ML, Karnan S, Ito T, Toyoda A, Ota A, Wahiduzzaman M, Tsuzuki S, Okada Y, Hosokawa Y, Konishi H.
- Journal Title
  
  Cell Rep.
  
  Volume: 30 Issue: 4 Pages: 1195-1207
- DOI
  10.1016/j.celrep.2019.12.064
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K07539, KAKENHI-PROJECT-19K07969, KAKENHI-PROJECT-19K09292, KAKENHI-PROJECT-17K19465, KAKENHI-PROJECT-18K14703, KAKENHI-PROJECT-19H03576, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18K15470, KAKENHI-PROJECT-20K16611, KAKENHI-PROJECT-19J40240, KAKENHI-PROJECT-18K08342, KAKENHI-PROJECT-17K07263
[Journal Article] Toward repositioning Allium vegetable crops as global commodities : opportunities and challenges for future application of omics and phytomedomics platforms to crop improvement.2019
- Author(s)
  M. Shigyo, S. Fujito, S. Sato
- Journal Title
  
  Acta Hortic
  
  Volume: 1251 Issue: 1251 Pages: 1-7
- DOI
  10.17660/actahortic.2019.1251.1
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Alternative oxidase capacity of mitochondria in microsporophylls may function in cycad thermogenesis2019
- Author(s)
  Ito-Inaba Yasuko、Sato Mayuko、Sato Mitsuhiko P、Kurayama Yuya、Yamamoto Haruna、Ohata Mizuki、Ogura Yoshitoshi、Hayashi Tetsuya、Toyooka Kiminori、Inaba Takehito
- Journal Title
  
  Plant Physiology
  
  Volume: 180 Issue: 2 Pages: 743-756
- DOI
  10.1104/pp.19.00150
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07762, KAKENHI-PROJECT-18H02169, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K07477
[Journal Article] Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer2019
- Author(s)
  Yachida Shinichi、Mizutani Sayaka、Shiroma Hirotsugu、Shiba Satoshi、Nakajima Takeshi、Sakamoto Taku、Saito Yutaka、Fukuda Shinji、Shibata Tatsuhiro、Yamada Takuji
- Journal Title
  
  Nature Medicine
  
  Volume: 25 Issue: 6 Pages: 968-976
- DOI
  10.1038/s41591-019-0458-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-18K15800, KAKENHI-PUBLICLY-18H04805, KAKENHI-PROJECT-16H06373, KAKENHI-PROJECT-19J40249, KAKENHI-PROJECT-16H06279
[Journal Article] Curing cytoplasmic male sterility via TALEN- mediated mitochondrial genome editing2019
- Author(s)
  Tomohiko Kazama 1*, Miki Okuno2, Yuta Watari3, Shungo Yanase3, Chie Koizuka4, Yu Tsuruta3, Hajime Sugaya3, Atsushi Toyoda 5, Takehiko Itoh2, Nobuhiro Tsutsumi3, Kinya Toriyama1, Nobuya Koizuka 4* and Shin-ichi Arimura 3,6*
- Journal Title
  
  Nature Plants
  
  Volume: 5 Issue: 7 Pages: 722-730
- DOI
  10.1038/s41477-019-0459-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19202, KAKENHI-PUBLICLY-18H04831, KAKENHI-PROJECT-17H01457, KAKENHI-PROJECT-16H06279
[Journal Article] The Story of Helicobacter pylori : Depicting Human Migrations from the Phylogeography.2019
- Author(s)
  Waskito LA, Yamaoka Y.
- Journal Title
  
  Adv Exp Med Biol.
  
  Volume: 1149 Pages: 1-16
- DOI
  10.1007/5584_2019_356
- ISBN
  9783030219154, 9783030219161
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Mdm2-p53-SF1 pathway in ovarian granulosa cells directs ovulation and fertilization by conditioning oocyte quality2019
- Author(s)
  Haraguchi Hirofumi、Hirota Yasushi、Saito-Fujita Tomoko、Tanaka Tomoki、Shimizu-Hirota Ryoko、Harada Miyuki、Akaeda Shun、Hiraoka Takehiro、Matsuo Mitsunori、Matsumoto Leona、Hirata Tetsuya、Koga Kaori、Wada-Hiraike Osamu、Fujii Tomoyuki、Osuga Yutaka
- Journal Title
  
  The FASEB Journal
  
  Volume: 33 Issue: 2 Pages: 2610-2620
- DOI
  10.1096/fj.201801401r
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K10668, KAKENHI-PROJECT-18K19600, KAKENHI-PROJECT-18K19601, KAKENHI-PROJECT-17H06640, KAKENHI-PROJECT-17J05930, KAKENHI-PROJECT-18K09284, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K18631, KAKENHI-PROJECT-16H04679, KAKENHI-PROJECT-16H05469, KAKENHI-PROJECT-19H03144
[Journal Article] Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease2019
- Author(s)
  Ishiura Hiroyuki、Shibata Shota、Yoshimura Jun、Suzuki YutaMano Tatsuo、Iwata Atsushi、Toda Tatsushi、Morishita Shinichi、Tsuji Shoji、et al
- Journal Title
  
  Nature Genetics
  
  Volume: 51 Issue: 8 Pages: 1222-1232
- DOI
  10.1038/s41588-019-0458-z
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K17027, KAKENHI-PROJECT-17H05085, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H00597
[Journal Article] Five alternative Helicobacter pylori antibiotics to counter high levofloxacin and metronidazole resistance in the Dominican Republic2019
- Author(s)
  Miftahussurur Muhammad、Cruz Modesto、Doohan Dalla、Subsomwong Phawinee、Abreu Jos? A. Jim?nez、Hosking Celso、Waskito Langgeng Agung、Yamaoka Yoshio
- Journal Title
  
  PLOS ONE
  
  Volume: 14 Issue: 3 Pages: e0213868-e0213868
- DOI
  10.1371/journal.pone.0213868
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment2019
- Author(s)
  Fiordaliso Sarah K.、.....Shirahige Katsuhiko、Izumi Kosuke
- Journal Title
  
  The American Journal of Human Genetics
  
  Volume: 105 Issue: 5 Pages: 987-995
- DOI
  10.1016/j.ajhg.2019.09.009
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-17H06331, KAKENHI-PROJECT-17H01539, KAKENHI-PROJECT-19H03621, KAKENHI-INTERNATIONAL-15K21761
[Journal Article] Alternative eradication regimens for Helicobacter pylori infection in Indonesian regions with high metronidazole and levofloxacin resistance2019
- Author(s)
 Miftahussurur Muhammad、Waskito Langgeng Agung、Syam Ari Fahrial、Nusi Iswan Abbas、Siregar Gontar、Richardo Marselino、Bakry Achmad Fuad、Rezkitha Yudith Annisa Ayu、Wibawa I Dewa Nyoman、Yamaoka Yoshio
- Journal Title
 
 Infection and Drug Resistance
 
 Volume: Volume 12 Pages: 345-358
- DOI
 10.2147/idr.s187063
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
 KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak2019
- Author(s)
  Gotoh Yasuhiro、Taniguchi Takako、Yoshimura Dai、Katsura Keisuke、Saeki Yuji、Hirabara Yasutoshi、Fukuda Mayumi、Takajo Ichiro、Tomida Junko、Kawamura Yoshiaki、Ogura Yoshitoshi、Itoh Takehiko、Misawa Naoaki、Okayama Akihiko、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 5 Issue: 12 Pages: 1-11
- DOI
  10.1099/mgen.0.000236
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K08081, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] CDK1-mediated CENP-C phosphorylation modulates CENP-A binding and mitotic2019
- Author(s)
  Watanabe R, Hara M, Okumura EI, Herv S, Fachinetti D, Ariyoshi M, Fukagawa T
- Journal Title
  
  J Cell Biol.
  
  Volume: 218 Issue: 12 Pages: 4042-4062
- DOI
  10.1083/jcb.201907006
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06084, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05972, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H06167
[Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.2019
- Author(s)
  Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
- Journal Title
  
  DNA Res.
  
  Volume: 26 Issue: 5 Pages: 391-398
- DOI
  10.1093/dnares/dsz017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Genome sequencing verifies relapsed infection of Helicobacter cinaedi2019
- Author(s)
  Sawada Osamu、Gotoh Yasuhiro、Taniguchi Takako、Furukawa Shota、Yoshimura Dai、Sasaki Satomi、Shida Haruki、Kusunoki Yoshihiro、Yamamura Tsuyoshi、Furuya Ken、Itoh Takehiko、Horita Tetsuya、Hayashi Tetsuya、Misawa Naoaki
- Journal Title
  
  Open Forum Infectious Diseases
  
  Volume: 印刷中 Issue: 5
- DOI
  10.1093/ofid/ofz200
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-17K08081, KAKENHI-PROJECT-16H06279
[Journal Article] The Structural Integrity of Lignin Is Crucial for Resistance against Striga hermonthica Parasitism in Rice2019
- Author(s)
  Mutuku J. Musembi、Cui Songkui、Hori Chiaki、Takeda Yuri、Tobimatsu Yuki、Nakabayashi Ryo、Mori Tetsuya、Saito Kazuki、Demura Taku、Umezawa Toshiaki、Yoshida Satoko、Shirasu Ken
- Journal Title
  
  Plant Physiology
  
  Volume: 179 Issue: 4 Pages: 1796-1809
- DOI
  10.1104/pp.18.01133
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-15H05959, KAKENHI-PROJECT-17H06172, KAKENHI-PROJECT-16H06198, KAKENHI-PROJECT-17J09654, KAKENHI-PROJECT-16K14958, KAKENHI-PROJECT-16K18727, KAKENHI-PROJECT-17K15142, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K15881, KAKENHI-PROJECT-18H02464, KAKENHI-PROJECT-19K16169
[Journal Article] Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout2019
- Author(s)
  Kawamura Y, Nakaoka H, Nakayama A, et al.
- Journal Title
  
  Ann Rheum Dis
  
  Volume: 78 Issue: 10 Pages: 1430-1437
- DOI
  10.1136/annrheumdis-2019-215521
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K08520, KAKENHI-PROJECT-19K22808, KAKENHI-PROJECT-18KK0229, KAKENHI-PROJECT-18KK0247, KAKENHI-PLANNED-16H06502, KAKENHI-PLANNED-17H06415, KAKENHI-PUBLICLY-19H05344, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H01554, KAKENHI-PROJECT-17H04128, KAKENHI-PROJECT-18H02685, KAKENHI-PROJECT-19H03371, KAKENHI-PROJECT-18F18409, KAKENHI-PROJECT-16H06279
[Journal Article] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.2019
- Author(s)
  Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T
- Journal Title
  
  Nat Commun
  
  Volume: - Issue: 1 Pages: 1702-1702
- DOI
  10.1038/s41467-019-09575-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05979, KAKENHI-PROJECT-16H04719, KAKENHI-PROJECT-17K01019, KAKENHI-PROJECT-16H06279
[Journal Article] Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells2019
- Author(s)
  Nakato R, Wada Y, Nakaki R, Nagae G, Katou Y, Tsutsumi S, Nakajima N, Fukuhara H, Iguchi A, Kohro T, Kanki Y, Saito Y, Kobayashi M, Izumi-Taguchi A, Osato N, Tatsuno K, Kamio A, Hayashi-Takanaka Y, Wada H, Ohta S, Aikawa M, Nakajima H, Nakamura M, McGee RC, Heppner KW, Kawakatsu T, Genno M, Yanase H, Kume H, et al.
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 12 Issue: 1 Pages: 77-77
- DOI
  10.1186/s13072-019-0319-0
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00387, KAKENHI-PROJECT-18K07963, KAKENHI-PROJECT-19K20409, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-17H06331, KAKENHI-PLANNED-17H06410, KAKENHI-PLANNED-18H05527, KAKENHI-PLANNED-19H05744, KAKENHI-PROJECT-17H03614, KAKENHI-INTERNATIONAL-15K21761
[Journal Article] Re-evaluating the Localization of Sperm-Retained Histones Revealed the Modification-Dependent Accumulation in Specific Genome Regions.2018
- Author(s)
  Yamaguchi K, Hada M, Fukuda Y, Inoue E, Makino Y, Katou Y, Shirahige K, Okada Y.
- Journal Title
  
  Cell Rep.
  
  Volume: 23(13) Issue: 13 Pages: 3920-3932
- DOI
  10.1016/j.celrep.2018.05.094
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-17J09467, KAKENHI-PROJECT-18J00122
[Journal Article] A single pheromone receptor gene conserved across 400 million years of vertebrate evolution2018
- Author(s)
  Suzuki Hikoyu、Nishida Hidefumi、Kondo Hiro、Yoda Ryota、Iwata Tetsuo、Nakayama Kanako、Enomoto Takayuki、Wu Jiaqi、Moriya-Ito Keiko、Miyazaki Masao、Wakabayashi Yoshihiro、Kishida Takushi、Okabe Masataka、Suzuki Yutaka、Ito Takehiko、Hirota Junji、Nikaido Masato
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 35 Issue: 12 Pages: 2928-2939
- DOI
  10.1093/molbev/msy186
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K14932, KAKENHI-PROJECT-16H04820, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-18H04602, KAKENHI-PROJECT-18F18385, KAKENHI-PUBLICLY-18H04610
[Journal Article] Retained plsticity and substantial recovery of rod-mediated visual acuity at the visual cortex in blind adult mice with retinal dystrophy2018
- Author(s)
  Nishiguchi KM, Fujita K, Tokashiki N, Komamura H, Takemoto-Kimura S, Okuno H, Bito H, Nakazawa T.
- Journal Title
  
  Mol Ther
  
  Volume: 26 Issue: 10 Pages: 2397-2406
- DOI
  10.1016/j.ymthe.2018.07.012
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04258, KAKENHI-PROJECT-16K11315, KAKENHI-PROJECT-16H06279
[Journal Article] Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish.2018
- Author(s)
  Lal P, Tanabe H, Suster ML, Ailani D, Kotani Y, Muto A, Itoh M, Iwasaki M, Wada H, Yaksi E, Kawakami K.
- Journal Title
  
  BMC Biol.
  
  Volume: 16 Issue: 1 Pages: 45-45
- DOI
  10.1186/s12915-018-0502-y
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07386, KAKENHI-PUBLICLY-16H01651, KAKENHI-PROJECT-15H02370, KAKENHI-PROJECT-17K07494, KAKENHI-PUBLICLY-18H04988, KAKENHI-PROJECT-16H06279, KAKENHI-ORGANIZER-15H05935
[Journal Article] Response to Letter to the Editor Regarding “Genetic Analysis of Ring Finger Protein 213 (RNF213) c.14576G>A in Intracranial Atherosclerosis of the Anterior and Posterior Circulations”2018
- Author(s)
  Miyawaki Satoru、Shinya Yuki、Imai Hideaki、Hongo Hiroki、Ono Hideaki、Takenobu Atsumi、Nakatomi Hirofumi、Teraoka Akira、Saito Nobuhito
- Journal Title
  
  Journal of Stroke and Cerebrovascular Diseases
  
  Volume: 27 Issue: 10 Pages: 2894-2895
- DOI
  10.1016/j.jstrokecerebrovasdis.2018.07.009
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K16627, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H04301
[Journal Article] Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia2018
- Author(s)
  Waskito Langgeng Agung、Miftahussurur Muhammad、Lusida Maria Inge、Syam Ari Fahrial、Suzuki Rumiko、Subsomwong Phawinee、Uchida Tomohisa、Hamdan Muhammad、Nasronudin、Yamaoka Yoshio
- Journal Title
  
  Scientific Reports
  
  Volume: 8 Issue: 1 Pages: 6073-6073
- DOI
  10.1038/s41598-018-24406-y
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H02657, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] DBTSS/DBKERO for integrated analysis of transcriptional regulation2018
- Author(s)
  Suzuki Ayako、Kawano Shin、Mitsuyama Toutai、Suyama Mikita、Kanai Yae、Shirahige Katsuhiko、Sasaki Hiroyuki、Tokunaga Katsushi、Tsuchihara Katsuya、Sugano Sumio、Nakai Kenta、Suzuki Yutaka
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 46 Issue: (D1) Pages: D229-D238
- DOI
  10.1093/nar/gkx1001
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-16H01582, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-16H06279
[Journal Article] HIF2α in the uterine stroma permits embryo invasion and luminal epithelium detachment2018
- Author(s)
  Matsumoto Leona、Hirota Yasushi、Saito-Fujita Tomoko、Takeda Norihiko、Tanaka Tomoki、Hiraoka Takehiro、Akaeda Shun、Fujita Hidetoshi、Shimizu-Hirota Ryoko、Igaue Shota、Matsuo Mitsunori、Haraguchi Hirofumi、Saito-Kanatani Mayuko、Fujii Tomoyuki、Osuga Yutaka
- Journal Title
  
  Journal of Clinical Investigation
  
  Volume: 128 Issue: 7 Pages: 3186-3197
- DOI
  10.1172/jci98931
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K10668, KAKENHI-PROJECT-18K19600, KAKENHI-PROJECT-18K19601, KAKENHI-PLANNED-26111003, KAKENHI-PROJECT-17H06640, KAKENHI-PROJECT-17J05930, KAKENHI-PROJECT-18K09284, KAKENHI-PROJECT-17K16833, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16H04679, KAKENHI-PROJECT-16H05469, KAKENHI-PROJECT-16K09493
[Journal Article] Thioredoxin o-mediated reduction of mitochondrial alternative oxidase in the thermogenic skunk cabbage Symplocarpus renifolius2018
- Author(s)
  Umekawa Yui、Ito Kikukatsu
- Journal Title
  
  The Journal of Biochemistry
  
  Volume: 165 Issue: 1 Pages: 57-65
- DOI
  10.1093/jb/mvy082
- NAID
  40021789431
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05064, KAKENHI-PROJECT-16H06279
[Journal Article] The role of integrating conjugative elements in Helicobacter pylori: a review2018
- Author(s)
  Waskito Langgeng Agung、Yih-Wu Jeng、Yamaoka Yoshio
- Journal Title
  
  Journal of Biomedical Science
  
  Volume: 25 Issue: 1 Pages: 86-86
- DOI
  10.1186/s12929-018-0489-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Exogenous induction of thermogenesis in Arum concinnatum by salicylic acid2018
- Author(s)
  Laina Danae、Oikonomou Ioanna、Koutroumpa Konstantina、Bariotakis Michael、Kotzabasis Kiriakos、Ito Kikukatsu、Seymour Roger S.、Pirintsos Stergios A.
- Journal Title
  
  Functional Plant Biology
  
  Volume: 45 Issue: 12 Pages: 1195-1195
- DOI
  10.1071/fp17247
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H05064, KAKENHI-PROJECT-16H06279
[Journal Article] Epidemiology of Helicobacter pylori and CagA-Positive Infections and Global Variations in Gastric Cancer2018
- Author(s)
  Park Jin、Forman David、Waskito Langgeng、Yamaoka Yoshio、Crabtree Jean
- Journal Title
  
  Toxins
  
  Volume: 10 Issue: 4 Pages: 163-163
- DOI
  10.3390/toxins10040163
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H02657, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Pathogenesis of Helicobacter pylori infection2018
- Author(s)
  Waskito Langgeng Agung、Salama Nina R.、Yamaoka Yoshio
- Journal Title
  
  Helicobacter
  
  Volume: 23 Issue: Suppl 1
- DOI
  10.1111/hel.12516
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H05191, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Characterization of β-Glucuronidase?Positive Escherichia coli O157:H7 Producing Stx2a2018
- Author(s)
  Ogura Yoshitoshi、Seto Kazuko、Morimoto Yo、Nakamura Keiji、Sato Mitsuhiko P.、Gotoh Yasuhiro、Itoh Takehiko、Toyoda Atsushi、Ohnishi Makoto、Hayashi Tetsuya
- Journal Title
  
  Emerging Infectious Diseases
  
  Volume: 24 Issue: 12 Pages: 2219-2227
- DOI
  10.3201/eid2412.180404
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Mice with endogenous TDP-43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis.2018
- Author(s)
  Fratta P, Sivakumar P, Humphrey J, Lo K, Ricketts T, Oliveira H, Brito JM, Kalmar B, Ule A, Yu Y, Gondo Y, 他18名, Buratti E, Plagnol V, Fisher EM, Acevedo A
- Journal Title
  
  EMBO Journal
  
  Volume: 37 Issue: 11
- DOI
  10.15252/embj.201798684
- Description
  in press
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H00789
[Journal Article] Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles2018
- Author(s)
  Ando Toshiya、Matsuda Takeshi、Goto Kumiko、Hara Kimiko、Ito Akinori、Hirata Junya、Yatomi Joichiro、Kajitani Rei、Okuno Miki、Yamaguchi Katsushi、Kobayashi Masaaki、Takano Tomoyuki、Minakuchi Yohei、Seki Masahide、Suzuki Yutaka、Yano Kentaro、Itoh Takehiko、Shigenobu Shuji、Toyoda Atsushi、Niimi Teruyuki
- Journal Title
  
  Nature Communications
  
  Volume: 9 Issue: 1 Pages: 3843-3843
- DOI
  10.1038/s41467-018-06116-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05848, KAKENHI-PROJECT-16H06279
[Journal Article] A chromatin integration labelling method enables epigenomic profiling with lower input2018
- Author(s)
  Harada Akihito、Maehara Kazumitsu、Handa Tetsuya、Arimura Yasuhiro、Nogami Jumpei、Hayashi-Takanaka Yoko、Shirahige Katsuhiko、Kurumizaka Hitoshi、Kimura Hiroshi、Ohkawa Yasuyuki
- Journal Title
  
  Nature Cell Biology
  
  Volume: 21 Issue: 2 Pages: 287-296
- DOI
  10.1038/s41556-018-0248-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19432, KAKENHI-PROJECT-17K17719, KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PUBLICLY-18H04802, KAKENHI-PUBLICLY-18H04904, KAKENHI-PLANNED-18H05527, KAKENHI-PLANNED-18H05534, KAKENHI-PROJECT-17H01408, KAKENHI-PROJECT-17H01417, KAKENHI-PROJECT-17H03608, KAKENHI-PROJECT-17K19356
[Journal Article] Data analytic study of the homothermal maintenance mechanism of Skunk Cabbage: Capturing pre-equilibrium characteristics using extended poisson model2018
- Author(s)
 Kawasaki Shuji、Ito Kikukatsu
- Journal Title
 
 Biophysics and Physicobiology
 
 Volume: 15 Issue: 0 Pages: 235-250
- DOI
 10.2142/biophysico.15.0_235
- NAID
 130007506150
- ISSN
 2189-4779
- Language
 English
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-16H05064, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06330
[Journal Article] Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner2018
- Author(s)
  Watabe Eichi、Ono Shoichiro、Kuroyanagi Hidehito
- Journal Title
  
  Cytoskeleton
  
  Volume: 75 Issue: 10 Pages: 427-436
- DOI
  10.1002/cm.21489
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05596, KAKENHI-PROJECT-17H03633, KAKENHI-PROJECT-15KK0252, KAKENHI-PROJECT-16H06279
[Journal Article] Impaired diversity of the lung microbiome predicts progression of idiopathic pulmonary fibrosis2018
- Author(s)
  Takahashi Youhei、Saito Atsushi、Chiba Hirofumi、Kuronuma Koji、Ikeda Kimiyuki、Kobayashi Tomofumi、Ariki Shigeru、Takahashi Motoko、Sasaki Yasushi、Takahashi Hiroki
- Journal Title
  
  Respir Res
  
  Volume: 19 Issue: 1 Pages: 34-34
- DOI
  10.1186/s12931-018-0736-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K09181, KAKENHI-PROJECT-16K19460, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K07339, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-17K09662, KAKENHI-PROJECT-18K08150
[Journal Article] Tropomyosin isoforms differentially affect muscle contractility in the head and body regions of the nematode Caenorhabditis elegans2018
- Author(s)
  Barnes Dawn E.、Watabe Eichi、Ono Kanako、Kwak Euiyoung、Kuroyanagi Hidehito、Ono Shoichiro
- Journal Title
  
  Molecular Biology of the Cell
  
  Volume: 29 Issue: 9 Pages: 1075-1088
- DOI
  10.1091/mbc.e17-03-0152
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-15H01350, KAKENHI-PROJECT-26291003, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-17H05596, KAKENHI-PROJECT-17H03633, KAKENHI-PROJECT-15KK0252
[Journal Article] 3D genomic architecture reveals that neocentromeres associate with heterochromatin regions2018
- Author(s)
  Nishimura Kohei、Komiya Masataka、Hori Tetsuya、Itoh Takehiko、Fukagawa Tatsuo
- Journal Title
  
  The Journal of Cell Biology
  
  Volume: 218 Issue: 1 Pages: 134-149
- DOI
  10.1083/jcb.201805003
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07501, KAKENHI-PLANNED-15H05972, KAKENHI-PLANNED-15H05979, KAKENHI-PROJECT-17H06167, KAKENHI-PROJECT-17K15041, KAKENHI-PROJECT-16H06279
[Journal Article] Temporal Regulation of ESCO2 Degradation by the MCM Complex, the CUL4-DDB1-VPRBP Complex, and the Anaphase-Promoting Complex.2018
- Author(s)
  Minamino M, Tei S, Negishi L, Kanemaki MT, Yoshimura A, Sutani T, Bando M, Shirahige K.
- Journal Title
  
  Curr Biol.
  
  Volume: 28(16) Issue: 16 Pages: 2665-2672
- DOI
  10.1016/j.cub.2018.06.037
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PUBLICLY-18H04719, KAKENHI-PROJECT-16H04718, KAKENHI-PROJECT-18H02170, KAKENHI-PROJECT-17J07911
[Journal Article] Delayed Degradation and Impaired Dendritic Delivery of Intron-Lacking EGFP-Arc/Arg3.1 mRNA in EGFP-Arc Transgenic Mice.2018
- Author(s)
  Steward O, Matsudaira Yee K, Farris S, Pirbhoy PS, Worley P, Okamura K, Okuno H, Bito H.
- Journal Title
  
  Front Mol Neurosci.
  
  Volume: 10 Pages: 435-435
- DOI
  10.3389/fnmol.2017.00435
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06312, KAKENHI-PROJECT-15H02358, KAKENHI-PROJECT-15H04258, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16K07137
[Journal Article] Two three-strand intermediates are processed during Rad51-driven DNA strand exchange.2018
- Author(s)
  Ito K, Murayama Y, Takahashi M, Iwasaki H.
- Journal Title
  
  Nat Struct Mol Biol
  
  Volume: 25 Issue: 1 Pages: 29-36
- DOI
  10.1038/s41594-017-0002-8
- Peer Reviewed
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PUBLICLY-16H01404, KAKENHI-PROJECT-16H06160, KAKENHI-PLANNED-15H05974
[Journal Article] DNA Methylome Analysis Identifies Transcription Factor-Based Epigenomic Signatures of Multilineage Competence in Neural Stem/Progenitor Cells.2017
- Author(s)
  Sanosaka T, Imamura T, Hamazaki N, Chai M, Igarashi K, Ideta-Otsuka M, Miura F, Ito T, Fujii N, Ikeo K, Nakashima K
- Journal Title
  
  Cell Rep
  
  Volume: 20 Issue: 12 Pages: 2992-3003
- DOI
  10.1016/j.celrep.2017.08.086
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-INTERNATIONAL-16K21734, KAKENHI-PROJECT-26250038, KAKENHI-ORGANIZER-16H06524, KAKENHI-PLANNED-16H06527, KAKENHI-PROJECT-15H04603, KAKENHI-PROJECT-17H01882, KAKENHI-PROJECT-16K15054, KAKENHI-PROJECT-16H06279
[Journal Article] RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a completeset of Allium fistulosum-A. cepa monosomic addition lines2017
- Author(s)
  Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M.
- Journal Title
  
  PLoS One
  
  Volume: 12 Issue: 8 Pages: e0181784-e0181784
- DOI
  10.1371/journal.pone.0181784
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut2017
- Author(s)
  Pramono A.K., Kuwahara H., Itoh T., Toyoda A., Yamada A., Hongoh Y
- Journal Title
  
  Microbes and Environments
  
  Volume: 32 Issue: 2 Pages: 112-117
- DOI
  10.1264/jsme2.ME16175
- NAID
  130006789871
- ISSN
  1342-6311, 1347-4405
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26650158, KAKENHI-PROJECT-16H04840
[Journal Article] Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-12017
- Author(s)
  H Takami, A Toyoda, I Uchiyama, T Itoh, Y Takaki, W.Arai, S Nishi, M Kawai, K Shin-ya, H Ikeda
- Journal Title
  
  DNA Research
  
  Volume: 24 Pages: 169-177
- DOI
  10.1093/dnares/dsw055
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05979, KAKENHI-PLANNED-16H06447, KAKENHI-PROJECT-15KT0039
[Journal Article] The complete mitogenome and phylogenetic analysis of Japanese firefly ‘Genji Botaru’ Luciola cruciata (Coleoptera : Lampyridae)2017
- Author(s)
  Maeda J, Kato D, Arima K, Ito Y, Toyoda A, Noguchi H
- Journal Title
  
  Mitochondrial DNA Part B
  
  Volume: 2 Issue: 2 Pages: 522-523
- DOI
  10.1080/23802359.2017.1365641
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] The complete mitochondrial genome sequence and phylogenetic analysis of Luciola lateralis, one of the most famous firefly in Japan (Coleoptera : Lampyridae)2017
- Author(s)
  Maeda J, Kato D, Arima K, Ito Y, Toyoda A, Noguchi H
- Journal Title
  
  Mitochondrial DNA Part B
  
  Volume: 2 Issue: 2 Pages: 546-547
- DOI
  10.1080/23802359.2017.1365640
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Population structure of Escherichia coli O26:H11 with recent and repeated stx2 acquisition in multiple lineages2017
- Author(s)
  Ogura Yoshitoshi、Gotoh Yasuhiro、Itoh Takehiko、et al.
- Journal Title
  
  Microbial Genomics
  
  Volume: 3 Issue: 11
- DOI
  10.1099/mgen.0.000141
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K15278, KAKENHI-PROJECT-16H06279
[Journal Article] Identification of a variant-specific phosphorylation of TH2A during spermiogenesis.2017
- Author(s)
  Hada M, Masuda K, Yamaguchi K, Shirahige K, Okada Y.
- Journal Title
  
  Sci Rep.
  
  Volume: 7 Issue: 1 Pages: 46228-46228
- DOI
  10.1038/srep46228
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-INTERNATIONAL-15K21761, KAKENHI-PLANNED-15H05976
[Journal Article] F4/80+ macrophages contribute to clearance of senescent cells in the mouse postpartum uterus.2017
- Author(s)
  Egashira M, Hirota Y, Shimizu-Hirota R, Saito-Fujita T, Haraguchi H, Matsumoto L, Matsuo M, Hiraoka T, Tanaka T, Akaeda S, Takehisa C, Saito-Kanatani M, Maeda K, Fujii T, Osuga Y.
- Journal Title
  
  Endocrinology
  
  Volume: 印刷中 Issue: 7 Pages: 2344-2353
- DOI
  10.1210/en.2016-1886
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-16K15701, KAKENHI-PROJECT-16K10668, KAKENHI-PROJECT-17K16833, KAKENHI-PROJECT-16H04679, KAKENHI-PROJECT-16H05469, KAKENHI-PROJECT-17H06640, KAKENHI-PROJECT-15J40160, KAKENHI-PROJECT-15K10660, KAKENHI-PROJECT-16K15700, KAKENHI-PROJECT-16H06279
[Journal Article] An emerging model organism Caenorhabditis elegans for alternative pre-mRNA processing in vivo2017
- Author(s)
  Shotaro Wani & Hidehito Kuroyanagi
- Journal Title
  
  Wiley Interdisciplinary Reviews: RNA
  
  Volume: 印刷中 Issue: 6
- DOI
  10.1002/wrna.1428
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-15H01467, KAKENHI-PROJECT-26291003, KAKENHI-PROJECT-15KK0252, KAKENHI-PUBLICLY-15H01350, KAKENHI-PUBLICLY-17H05596, KAKENHI-PROJECT-17H03633, KAKENHI-PROJECT-16H06279
[Journal Article] Decreased cohesion in the brain leads to defective synapse development and anxiety-related behavior2017
- Author(s)
  Fujita Y, Masuda K, Bando M, Nakato R, Katou Y, Tanaka T, Nakayama M, Takao K, Miyakawa T, Tanaka T, Ago Y, Hashimoto H, Shirahige K, Yamashita T.
- Journal Title
  
  J. Exp. Med.
  
  Volume: 印刷中 Issue: 5 Pages: 1431-1452
- DOI
  10.1084/jem.20161517
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-15H01288, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-16H04718, KAKENHI-PROJECT-26293020, KAKENHI-PROJECT-26670122, KAKENHI-INTERNATIONAL-15K21761, KAKENHI-PROJECT-16K01946, KAKENHI-PUBLICLY-16H01270, KAKENHI-PUBLICLY-17H06051, KAKENHI-PROJECT-17H06178, KAKENHI-PROJECT-16K18364, KAKENHI-PROJECT-16H06276
[Journal Article] ChIP-seq Analysis of Condensin Complex in Cultured Mammalian Cells.2017
- Author(s)
  Sakata T, Shirahige K, Sutani T.
- Journal Title
  
  Methods Mol Biol.
  
  Volume: 1515 Pages: 257-271
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Journal Article] Long-term expansion of alveolar stem cells derived from human iPS cells in organoids2017
- Author(s)
  Yamamoto Yuki、Gotoh Shimpei、Korogi Yohei、Seki Masahide、Konishi Satoshi、Ikeo Satoshi、Sone Naoyuki、Nagasaki Tadao、Matsumoto Hisako、Muro Shigeo、Ito Isao、Hirai Toyohiro、Kohno Takashi、Suzuki Yutaka、Mishima Michiaki
- Journal Title
  
  Nature Methods
  
  Volume: 14 Issue: 11 Pages: 1097-1106
- DOI
  10.1038/nmeth.4448
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K09536, KAKENHI-PROJECT-15H02537, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H05084
[Journal Article] GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.2017
- Author(s)
  Nakayama A, Nakaoka H, Yamamoto K, Sakiyama M, Shaukat A, Toyoda Y, Okada Y, Ohkawa Y,他39名
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 76 Issue: 5 Pages: 869-877
- DOI
  10.1136/annrheumdis-2016-209632
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25116010, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-15H05610, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-26290064, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19356, KAKENHI-PROJECT-15H02373, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H03608, KAKENHI-PROJECT-17H04128
[Journal Article] Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.2016
- Author(s)
  Nakato R, Shirahige K.
- Journal Title
  
  Brief Bioinform
  
  Volume: 12 Pages: 1-12
- DOI
  10.1093/bib/bbw023
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-15K18465
[Journal Article] Genome sequence and analysis of the Japanese morning glory Ipomoea nil.2016
- Author(s)
  Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, et al.
- Journal Title
  
  Nature Communications
  
  Volume: 7 Issue: 1 Pages: 132395-132395
- DOI
  10.1038/ncomms13295
- NAID
  120005997914
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26221106, KAKENHI-PROJECT-16H04719, KAKENHI-PROJECT-15K07118, KAKENHI-PROJECT-16H06279
[Journal Article] DNMT3A R882 mutants interact with polycomb proteins to block haematopoietic stem and leukaemic cell differentiation.2016
- Author(s)
  Koya J, Kataoka K, Sato T, Bando M, Kato Y, Tsuruta-Kishino T, Kobayashi H, Narukawa K, Miyoshi H, Shirahige K, Kurokawa M.
- Journal Title
  
  Nat Commun.
  
  Volume: 7 Issue: 1 Pages: 10924-10924
- DOI
  10.1038/ncomms10924
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-PUBLICLY-15H01481, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15H02369, KAKENHI-PLANNED-23114003, KAKENHI-PROJECT-16K15500
[Journal Article] Attaching Accessory Devices to the Replisome.2016
- Author(s)
  Sutani T, Shirahige K.
- Journal Title
  
  Mol Cell.
  
  Volume: 63(3) Issue: 3 Pages: 347-8
- DOI
  10.1016/j.molcel.2016.07.017
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-INTERNATIONAL-15K21761
[Journal Article] Physical Association of Saccharomyces cerevisiae Polo-like Kinase Cdc5 with Chromosomal Cohesin Facilitates DNA Damage Response.2016
- Author(s)
  Pakchuen S, Ishibashi M, Takakusagi E, Shirahige K, Sutani T.
- Journal Title
  
  J Biol Chem.
  
  Volume: 291(33) Issue: 33 Pages: 17228-46
- DOI
  10.1074/jbc.m116.727438
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-INTERNATIONAL-15K21761
[Journal Article] From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri2016
- Author(s)
 Nishio H, Buzas DM, Nagano AJ, Suzuki Y, Sugano S, Ito M, Morinaga S, Kudoh H.
- Journal Title
 
 Genes Genet. Syst.
 
 Volume: 91 Issue: 1 Pages: 15-26
- DOI
 10.1266/ggs.15-00071
- NAID
 130005165463
- ISSN
 1341-7568, 1880-5779
- Language
 English
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-221S0002, KAKENHI-PUBLICLY-16H01459, KAKENHI-PROJECT-26221106, KAKENHI-PROJECT-15K18558
[Journal Article] Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion.2016
- Author(s)
  Abe T, Kawasumi, R. Arakawa, H. Hori, T. Shirahige, K. Losada, A. Fukagawa, T. Branzei, D.
- Journal Title
  
  Oncotarget
  
  Volume: 7 Issue: 42 Pages: 67934-67947
- DOI
  10.18632/oncotarget.11982
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-15H01477, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05972, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-25221106, KAKENHI-PROJECT-26440190, KAKENHI-INTERNATIONAL-15K21761
[Journal Article] The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent finescale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat.2016
- Author(s)
  Mariko Naito, Yoshitoshi Ogura, Takehiko Itoh, Mikio Shoji, Masaaki Okamoto, Tetsuya Hayashi, and Koji Nakayama
- Journal Title
  
  DNA Research
  
  Volume: 23 Pages: 11-16
- DOI
  10.1093/dnares/dsv032
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26462789, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25462863, KAKENHI-PLANNED-24117006
[Journal Article] The genomic basis of parasitism in the Strongyloides clade of nematodes2016
- Author(s)
  Hunt, V. L. Tsai, I. J. Coghlan, A. Reid, A. J. Holroyd, N. Foth, B. J. Tracey, A. Cotton, J. A. Stanley, E. J. Beasley, H. Bennett, H. M. Brooks, K. Harsha, B. Kajitani, R. Kulkarni, A. Harbecke, D. Nagayasu, E et.al
- Journal Title
  
  Nature genetics
  
  Volume: 48 Issue: 3 Pages: 299-307
- DOI
  10.1038/ng.3495
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26460509, KAKENHI-PROJECT-26460510, KAKENHI-PROJECT-221S0002
[Journal Article] Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort2016
- Author(s)
  Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
- Journal Title
  
  Neurobiology of Aging
  
  Volume: 39 Pages: 219-219
- DOI
  10.1016/j.neurobiolaging.2015.11.030
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K19485, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25461277, KAKENHI-PROJECT-15K15337, KAKENHI-PROJECT-26670439, KAKENHI-PROJECT-26670445, KAKENHI-PROJECT-25860725, KAKENHI-PROJECT-25293207, KAKENHI-ORGANIZER-26117001, KAKENHI-PROJECT-15H05667, KAKENHI-PROJECT-26461319
[Journal Article] Assembly of Slx4 signaling complexes behind DNA replication forks2015
- Author(s)
  Attila Balint, TaeHyung Kim, David Gallo, Jose Renato Cussiol, Francisco M Bastos de Oliveira, Askar Yimit, Jiongwen Ou, Ryuichiro Nakato, Alexey Gurevich, Katsuhiko Shirahige, Marcus B Smolka, Zhaolei Zhang, Grant W Brown
- Journal Title
  
  The EMBO Journal
  
  Volume: 34 Issue: 16 Pages: 2182-2197
- DOI
  10.15252/embj.201591190
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976
[Journal Article] Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.2015
- Author(s)
  Matsuo H, et al.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 印刷中 Issue: 4 Pages: 652-659
- DOI
  10.1136/annrheumdis-2014-206191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-24390217, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-24590457, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244
[Journal Article] The Deubiquitinating Enzyme USP7 Regulates Androgen Receptor Activity by Modulating Its Binding to Chromatin2015
- Author(s)
  Shu-Ting Chen, Maiko Okada, Ryuichiro Nakato, Kosuke Izumi, Masashige Bando and Katsuhiko Shirahige
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 290 Issue: 35 Pages: 21713-21723
- DOI
  10.1074/jbc.m114.628255
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PUBLICLY-26102741, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-25290065
[Journal Article] Complete genome sequence of Methylobacterium aquaticum strain 22A, isolated from Racomitrium japonicum moss.2015
- Author(s)
  Tani A., Ogura Y., Hayashi T., Kimbara K.
- Journal Title
  
  Genome Announc
  
  Volume: 3 Issue: 2
- DOI
  10.1128/genomea.00266-15
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25660060, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04476
[Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation2015
- Author(s)
  Takashi Kubota, Yuki Katou, Ryuichiro Nakato, Katsuhiko Shirahige, Anne D. Donaldson
- Journal Title
  
  Cell Reports
  
  Volume: 12 Issue: 5 Pages: 774-787
- DOI
  10.1016/j.celrep.2015.06.066
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-23114003
[Journal Article] Condensin Relocalization from Centromeres to Chromosome Arms Promotes Top2 Recruitment during Anaphase.2015
- Author(s)
  Leonard J, Sen N, Torres R, Sutani T, Jarmuz A, Shirahige K, Aragon L.
- Journal Title
  
  Cell Rep.
  
  Volume: 13(11) Issue: 11 Pages: 2336-44
- DOI
  10.1016/j.celrep.2015.11.041
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976
[Journal Article] Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.2015
- Author(s)
  Yoshida K, Renard-Guillet C, Inoue K, Shirahige K, Okada-Hatakeyama M, Ishii S.
- Journal Title
  
  Genom Data.
  
  Volume: 7 Pages: 90-1
- DOI
  10.1016/j.gdata.2015.11.028
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-26291006
[Journal Article] Esco1 Acetylates Cohesin via a Mechanism Different from That of Esco22015
- Author(s)
  Masashi Minamino, Mai Ishibashi, Ryuichiro Nakato, Kazuhiro Akiyama, Hiroshi Tanaka, Yuki Kato, Lumi Negishi, Toru Hirota, Takashi Sutani, Masashige Bando, Katsuhiko Shirahige
- Journal Title
  
  Current Biology
  
  Volume: 25 Issue: 13 Pages: 1694-1706
- DOI
  10.1016/j.cub.2015.05.017
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-15H05977, KAKENHI-PUBLICLY-26114718, KAKENHI-PUBLICLY-26116523, KAKENHI-PROJECT-15H02365, KAKENHI-PROJECT-15J10948, KAKENHI-PROJECT-26640086, KAKENHI-PROJECT-24370076, KAKENHI-PROJECT-25290065
[Journal Article] Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation.2015
- Author(s)
  Urushihara H, Kuwayama H, Fukuhara K, Itoh T, Kagoshima H, Shin-I T, Toyoda A, Ohishi K, Taniguchi T, Noguchi H, Kuroki Y, Hata T, Uchi K, Mohri K, King JS, Insall RH, Kohara Y, Fujiyama A.
- Journal Title
  
  BMC Genomics
  
  Volume: 16 Issue: 1 Pages: 80-80
- DOI
  10.1186/s12864-015-1278-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation2015
- Author(s)
  Takashi Sutani, Toyonori Sakata, Ryuichiro Nakato, Koji Masuda, Mai Ishibashi, Daisuke Yamashita, Yutaka Suzuki, Tatsuya Hirano, Masashige Bando, Katsuhiko Shirahige
- Journal Title
  
  Nature Communications
  
  Volume: 6 Issue: 1 Pages: 1-13
- DOI
  10.1038/ncomms8815
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15J10909, KAKENHI-PROJECT-25290065
[Journal Article] Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.2015
- Author(s)
  Izumi K, Nakato R, Zhang Z, Edmondson AC, Noon S, Dulik MC, Rajagopalan R, Venditti CP, Gripp K, Samanich J, Zackai EH, Deardorff MA, Clark D, Allen JL, Dorsett D, Misulovin Z, Komata M, Bando M, Kaur M, Katou Y, Shirahige K*, Krantz ID*.
- Journal Title
  
  Nature Genetics
  
  Volume: 47 Issue: 4 Pages: 338-338
- DOI
  10.1038/ng.3229
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065, KAKENHI-PLANNED-23114003, KAKENHI-PUBLICLY-15H01347
[Journal Article] A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly2015
- Author(s)
  H. Nishikawa, T Iijima, R Kajitani, et. al.
- Journal Title
  
  Nature Genetics
  
  Volume: 47 Issue: 4 Pages: 405-409
- DOI
  10.1038/ng.3241
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-24370066, KAKENHI-PROJECT-24380030, KAKENHI-PROJECT-26430200, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128005, KAKENHI-PROJECT-24370001, KAKENHI-PROJECT-15H05778
[Journal Article] RNA-seq transcriptional profiling of an arbuscular mycorrhiza provides insights into regulated and coordinated gene expression in Lotus japonicus and Rhizophagus irregularis.2015
- Author(s)
  Handa, Y., Nishide, H., Takeda, N., Suzuki, Y., Kawaguchi, M., Saito, K.
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: 56 Pages: 1490-1511
- NAID
  120007101327
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence2015
- Author(s)
  Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M.
- Journal Title
  
  ISME Journal
  
  Volume: in press Issue: 5 Pages: 1166-1176
- DOI
  10.1038/ismej.2014.209
- NAID
  120005667717
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-221S0002
[Journal Article] The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.2015
- Author(s)
  Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Ishibashi K,Chatton B, Inoue K, Uchiyama T, Yamada T, Ohno N, Shirahige K, Okada-Hatakeyama M, Ishii S.
- Journal Title
  
  Nat Immunol.
  
  Volume: 16(10) Issue: 10 Pages: 1034-43
- DOI
  10.1038/ni.3257
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-25460377, KAKENHI-PROJECT-26291006
[Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015
- Author(s)
  Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: pcv193
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Defining the Genome Features of Escherichia albertii, an Emerging Enteropathogen Closely Related to Escherichia coli2015
- Author(s)
  Ooka T, Ogura Y, Katsura K, Seto K, Kobayashi H, Kawano K, Tokuoka E, Furukawa M, Harada S, Yoshino S, Seto J, Ikeda T, Yamaguchi K, Murase K, Gotoh Y, Imuta N, Nishi J, Gomes TA, Beutin L, Hayashi T.
- Journal Title
  
  Genome Biol Evol
  
  Volume: 7(12) Pages: 3170-3179
- DOI
  10.1093/gbe/evv211
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26461589, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25460539
[Journal Article] Genome-wide association study identifies a PSMD3 variant associated with neutropenia in interferon-based therapy for chronic hepatitis C.2015
- Author(s)
  Iio E, Matsuura K, Nishida N, Maekawa S, Yatsuhashi H, Kurosaki M, Izumi N, Hiasa Y, Masaki N, Ide T, Hino K, Tamori A, Honda M, Kaneko S, Mochida S, Nomura H, Nishiguchi S, Okuse C, Itoh Y, Yoshiji H, Sakaida I, Yamamoto K, Watanabe H, Hige S, Matsumoto A, Tanaka E, Tokunaga K, and Tanaka Y.
- Journal Title
  
  Hum. Genet.
  
  Volume: 134
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses.2015
- Author(s)
  Yuta Matsumura, Hidayu Al-saari, Sayaka Mino, Satoshi Nakagawa, Fumito Maruyama, Yoshitoshi Ogura, Tetsuya Hayashi, Ken Kurokawa, Toko Sawabe, Tomoo Sawabe.
- Journal Title
  
  Int. J. Hydrogen Energy
  
  Volume: 40 Pages: 9137-9146
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Draft genome sequence of the archiascomycetous yeast Saitoella complicata.2015
- Author(s)
  Kenta Yamauchi, Shinji Kondo, Makiko Hamamoto, Yurika Takahashi, Yoshitoshi Ogura, Tetsuya Hayashi, Hiromi Nishida
- Journal Title
  
  Genome Announc.
  
  Volume: in press
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] The chromosomal association of the Smc5/6 complex depends on cohesion and predicts the level of sister chromatid entanglement.2014
- Author(s)
  Jeppsson K, Carlborg KK, Nakato R, Berta DG, Lilienthal I, Kanno T, Lindqvist A, Brink MC, Dantuma NP, Katou Y, Shirahige K, Sjogren C.
- Journal Title
  
  PLoS Genet.
  
  Volume: 10
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Intermediate form between alternating hemiplegia of childhood and rapid-onset dystonia-parkinsonism.2014
- Author(s)
  Sasaki M, Ishii A, Saito Y, Hirose S.
- Journal Title
  
  Movement disorders
  
  Volume: 29 Issue: 1 Pages: 153-154
- DOI
  10.1002/mds.25659
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23791201, KAKENHI-PROJECT-24249060, KAKENHI-PUBLICLY-25129708, KAKENHI-PROJECT-25670481, KAKENHI-PROJECT-221S0002
[Journal Article] Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. are located at different loci in a chromosomal region.2014
- Author(s)
  K Yamamoto, Y Oda, A Haseda, S Fujito, T Mikami and Y Onodera
- Journal Title
  
  Heredity
  
  Volume: 112(3) Issue: 3 Pages: 317-324
- DOI
  10.1038/hdy.2013.112
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Genotype-Phenotype Correlations in Alternating Hemiplegia of Childhood2014
- Author(s)
  Sasaki M, Ishii A, Saito Y, (中略）, Tsuji S and Hirose S.
- Journal Title
  
  Neurology
  
  Volume: 82 Issue: 6 Pages: 482-490
- DOI
  10.1212/wnl.0000000000000102
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22129002, KAKENHI-PROJECT-23791201, KAKENHI-PROJECT-24249060, KAKENHI-PUBLICLY-25129708, KAKENHI-PROJECT-25670481, KAKENHI-PROJECT-221S0002
[Journal Article] Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis2014
- Author(s)
  N. suda, T. Itoh, R. Nakato et. al.
- Journal Title
  
  Development
  
  Volume: 141 Issue: 14 Pages: 2885-2894
- DOI
  10.1242/dev.099150
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22125008, KAKENHI-PUBLICLY-25111720, KAKENHI-PROJECT-25291086, KAKENHI-PROJECT-25461353, KAKENHI-PLANNED-23114003
[Journal Article] Histone variants enriched in oocytes enhance reprogramming to induced pluripotent stem cells.2014
- Author(s)
  Shinagawa T, Takagi T, Tsukamoto D, Tomaru C, Huynh LM, Sivaraman P, Kumarevel T, Inoue K, Nakato R, Katou Y, Sado T, Takahashi S, Ogura A, Shirahige K, Ishii S.
- Journal Title
  
  Cell Stem Cell.
  
  Volume: 14 Pages: 217-224
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] HAP2/GCS1 Is Involved in the Sexual Reproduction System of the Marine Macroalga Ulva compressa (Ulvales, Chlorophyta)2014
- Author(s)
 Yamazaki, T., Endo, M., Ito, K., Suzuki, R., Ota, S., Kuwano, K., Miyamura, S., Toyoda, A. and Kawano, S.
- Journal Title
 
 CYTOLOGIA
 
 Volume: 79 Issue: 4 Pages: 575-584
- DOI
 10.1508/cytologia.79.575
- NAID
 130004801645
- ISSN
 0011-4545, 1348-7019
- Language
 English
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-24657046, KAKENHI-PROJECT-25291070, KAKENHI-PROJECT-25840135, KAKENHI-PROJECT-221S0002
[Journal Article] Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.2014
- Author(s)
  Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong, and Kazuhiro Kogure.
- Journal Title
  
  Proc Natl Acad Sci U S A
  
  Volume: 111 Issue: 18 Pages: 6732-6737
- DOI
  10.1073/pnas.1403051111
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23710231, KAKENHI-PROJECT-24681003, KAKENHI-PROJECT-221S0002
[Journal Article] Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.2014
- Author(s)
  R. Kajitani, K. Toshimoto, H. Noguchi, A. Toyoda, Y. Ogura, M. Okuno, M. Yabana, M. Harada, E. Nagayasu, H. Maruyama, Y. Kohara, A. Fujiyama, T. Hayashi and T.Itoh
- Journal Title
  
  Genome Research,
  
  Volume: 24 Issue: 8 Pages: 1384-1384
- DOI
  10.1101/gr.170720.113
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-24310142, KAKENHI-PUBLICLY-25125718, KAKENHI-PROJECT-25250024, KAKENHI-PROJECT-25460542, KAKENHI-PROJECT-221S0002
[Journal Article] Design, Synthesis, and Biological Activity of NCC149 Derivatives as Histone Deacetylase 8-Selective Inhibitors.2014
- Author(s)
  Suzuki T, Muto N, Bando M, Itoh Y, Masaki A, Ri M, Ota Y, Nakagawa H, Iida S, Shirahige K, Miyata N.
- Journal Title
  
  ChemMedChem.
  
  Volume: 9 Issue: 3 Pages: 657-664
- DOI
  10.1002/cmdc.201300414
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-24659050, KAKENHI-PROJECT-24689007, KAKENHI-PROJECT-25290065
[Journal Article] The maintenance of chromosome structure: positioning and functioning of SMC complexes.2014
- Author(s)
  Jeppsson K, Kanno T, Shirahige K, Sjogren C.
- Journal Title
  
  Nat Rev Mol Cell Biol.
  
  Volume: 15 Issue: 9 Pages: 601-614
- DOI
  10.1038/nrm3857
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Smc5/6-mediated regulation of replication progression contributes to chromosome assembly during mitosis in human cells.2014
- Author(s)
  Gallego-Paez LM, Tanaka H, Bando M, Takahashi M, Nozaki N, Nakato R, Shirahige K*, Hirota T*.(Shared Corresponding Authors)
- Journal Title
  
  Mol Biol Cell.
  
  Volume: 27 Issue: 2 Pages: 2736-2748
- DOI
  10.1091/mbc.e13-01-0020
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-22221009, KAKENHI-PUBLICLY-24114517, KAKENHI-PROJECT-24370076, KAKENHI-PROJECT-25290065, KAKENHI-PUBLICLY-26116523, KAKENHI-PROJECT-26640086
[Journal Article] Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis.2014
- Author(s)
  Park SJ, Komata M, Inoue F, Yamada K, Nakai K, Ohsugi M, Shirahige K.
- Journal Title
  
  Genes Dev.
  
  Volume: 27 Issue: 24 Pages: 2736-2748
- DOI
  10.1101/gad.227926.113
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Assessment of Helminth Biodiversity in Wild Rats Using 18S rDNA Based Metagenomics2014
- Author(s)
  Ryusei Tanaka, Akina Hino, Isheng J. Tsai, Juan Emilio Palomares-Rius1, Ayako Yoshida,Yoshitoshi Ogura, Tetsuya Hayashi, Haruhiko Maruyama, Taisei Kikuchi
- Journal Title
  
  PLOS ONE
  
  Volume: 9 Issue: 10 Pages: e110769-e110769
- DOI
  10.1371/journal.pone.0110769
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-13J09930, KAKENHI-PROJECT-24780044, KAKENHI-PROJECT-26460510, KAKENHI-PROJECT-221S0002
[Journal Article] Characterization of sexual reproductive processes in Chara braunii (Charales, Charophyceae).2014
- Author(s)
  Sato, M., Sakayama, H., Sato, M., Ito, M., Sekimoto, H.
- Journal Title
  
  Phycol. Res.
  
  Volume: 62 Issue: 3 Pages: 214-221
- DOI
  10.1111/pre.12056
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PUBLICLY-24112713, KAKENHI-PROJECT-24370038, KAKENHI-PROJECT-221S0002
[Journal Article] Mutations in ERBB4 That Disrupt The NRG-ErbB4 Pathway Cause Autosomal Dominant Familial ALS Type 192014
- Author(s)
  Yuji Takahashi, Yoko Fukuda, Jun Yoshimura, Atsushi Toyoda, Kari Kurppa, Hiroyoko Moritoyo, Veronique Belzil, Klaus Elenius, Guy Rouleau, Asao Fujiyama, Shinichi Morishita, Jun Goto, Shoji Tsuji
- Journal Title
  
  Neurology
  
  Volume: 82
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Chromatin immunoprecipitation protocol for mammalian cells.2014
- Author(s)
  Komata M, Katou Y, Tanaka H, Nakato R, Shirahige K, Bando M.
- Journal Title
  
  Methods Mol Biol.
  
  Volume: 1164 Pages: 33-38
- DOI
  10.1007/978-1-4939-0805-9_4
- ISBN
  9781493908042, 9781493908059
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065
[Journal Article] Direct binding of Ataxin-2 to distinct elements in 3' UTRs promotes mRNA stability and protein expression.2014
- Author(s)
  Yokoshi, M., Li, Q., Yamamoto, M., Okada, H., Suzuki, Y., and Kawahara, Y.
- Journal Title
  
  Molecular cell
  
  Volume: 55 Issue: 2 Pages: 186-198
- DOI
  10.1016/j.molcel.2014.05.022
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-14J01452, KAKENHI-PUBLICLY-25110719, KAKENHI-PROJECT-25293201, KAKENHI-PROJECT-25670419, KAKENHI-PROJECT-221S0002
[Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates2014
- Author(s)
  Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
- Journal Title
  
  Development
  
  Volume: 141 Issue: 13 Pages: 2568-80
- DOI
  10.1242/dev.108548
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-221S0002, KAKENHI-ORGANIZER-22127001
[Journal Article] Generation of a dual-color reporter mouse line to monitor spermatogenesis in vivo2014
- Author(s)
  Yoshinori Makino, Erina Inoue, Masashi Hada, Keisuke Aoshima, Satsuki Kitano, Hitoshi Miyachi and Yuki Okada
- Journal Title
  
  Frontiers in cell and developmental biology
  
  Volume: 2 Pages: 1-9
- DOI
  10.3389/fcell.2014.00030
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-14J10178, KAKENHI-PLANNED-22125007
[Journal Article] Multiple regulation of rad51-mediated homologous recombination by fission yeast fbh12014
- Author(s)
  Tsutsui Y, Kurokawa Y, Ito K, Siddique MS, Kawano Y, Yamao F and Iwasaki H.
- Journal Title
  
  PLoS Genetics
  
  Volume: 28 Issue: 8 Pages: e1004542-e1004542
- DOI
  10.1371/journal.pgen.1004542
- NAID
  120007115992
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PLANNED-22125003, KAKENHI-PROJECT-24247033, KAKENHI-PROJECT-25440005
[Journal Article] SORL1 is genetically associated with neuropathologically characterized late-onset Alzheimer's disease2013
- Author(s)
  Wen Y, Miyashita A, Kitamura N, Tsukie T, Saito Y, Hatsuta H, Murayama S, et al.
- Journal Title
  
  J Alzheimers Dis
  
  Volume: 35(2) Issue: 2 Pages: 387-94
- DOI
  10.3233/jad-122395
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22590968, KAKENHI-PROJECT-24310144, KAKENHI-PROJECT-24500431, KAKENHI-PROJECT-24510275, KAKENHI-PROJECT-24650149, KAKENHI-PROJECT-24700371, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22129004
[Journal Article] Sensory-neuron subtype-specific transcriptional programs controlling dendrite morphogenesis: genome-wide analysis of Abrupt and Knot/Collier.2013
- Author(s)
  Yukako Hattori, Tadao Usui, Daisuke Satoh, Sanefumi Moriyama, Kohei Shimono, Takehiko Itoh, Katsuhiko Shirahige, Tadashi Uemura.
- Journal Title
  
  Developmental Cell
  
  Volume: 27(5) Issue: 5 Pages: 530-544
- DOI
  10.1016/j.devcel.2013.10.024
- NAID
  120005348995
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22115006, KAKENHI-ORGANIZER-22125001, KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-221S0003, KAKENHI-PUBLICLY-24111525, KAKENHI-PROJECT-24500410
[Journal Article] Identification of ATP1A3 mutations by exome sequencing as the cause of alternating hemiplegia of childhood in Japanese patients.2013
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  Ishii A, Saito Y, Mitsui J, Ishiura H, Yoshimura J, Arai H, Yamashita S, Kimura S, Oguni H, Morishita S, Tsuji S, Sasaki M, Hirose S.
- Journal Title
  
  PLoS One
  
  Volume: 8 Issue: 2 Pages: e56120-e56120
- DOI
  10.1371/journal.pone.0056120
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22129001, KAKENHI-PROJECT-23659529, KAKENHI-PROJECT-23790384, KAKENHI-PROJECT-23791201, KAKENHI-PROJECT-24249060, KAKENHI-PUBLICLY-25129708, KAKENHI-PROJECT-25670481, KAKENHI-PROJECT-25860700, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22129008
[Journal Article] Comparison of Genomic and Epigenomic Expression in Monozygotic Twins Discordant for Rett Syndrome.2013
- Author(s)
  Miyake K, Yang C, Minakuchi Y, Ohori K, Soutome M, Hirasawa T, Kazuki Y, Adachi N, Suzuki S, Itoh M, Goto YI, Andoh T, Kurosawa H, Oshimura M, Sasaki M, Toyoda A, Kubota T.
- Journal Title
  
  PLoS One.
  
  Volume: 8(6)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes2013
- Author(s)
  Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M Kurokawa K
- Journal Title
  
  DNA Res
  
  Volume: 21 Issue: 2 Pages: 217-227
- DOI
  10.1093/dnares/dst052
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-24658068, KAKENHI-PROJECT-24770015, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-221S0002
[Journal Article] DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data.2013
- Author(s)
  Nakato R, Itoh T, Shirahige K.
- Journal Title
  
  Genes to Cells.
  
  Volume: 6月号 Pages: 1-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells2013
- Author(s)
  Yamaji, M., Ueda, J., Hayashi, K., Ohta, H., Yabuta, Y., Kurimoto, K., Nakato, R., Shirahige, K., and Saitou, M
- Journal Title
  
  Cell Stem Cell
  
  Volume: 12 Issue: 3 Pages: 368-382
- DOI
  10.1016/j.stem.2012.12.012
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20062011, KAKENHI-PROJECT-21677003, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-23870017, KAKENHI-PROJECT-24681039
[Journal Article] Rapid Discovery of Highly Potent and Selective Inhibitors of Histone Deacetylase 8 Using Click Chemistry to Generate Candidate Libraries2012
- Author(s)
  Takayoshi Suzuki, Yosuke Ota, Masaki Ri, Masashige Bando, Aogu Gotoh, Yukihiro Itoh, Hiroki Tsumoto, Prima R. Tatum, Tamio Mizukami, Hidehiko Nakagawa, Shinsuke Iida, Ryuzo Ueda, Katsuhiko Shirahige, and Naoki Miyata.
- Journal Title
  
  J. Med. Chem.
  
  Volume: 55 Issue: 22 Pages: 9562-9575
- DOI
  10.1021/jm300837y
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-10F00812, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-24659050, KAKENHI-PROJECT-24689007, KAKENHI-PROJECT-221S0001
[Journal Article] The Prereplication Complex Recruits XEco2 to Chromatin to Promote Cohesin Acetylation in Xenopus Egg Extracts2012
- Author(s)
  Torahiko L. Higashi
- Journal Title
  
  Current Biology
  
  Volume: 22 Issue: 11 Pages: 977-988
- DOI
  10.1016/j.cub.2012.04.013
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J01240, KAKENHI-PUBLICLY-22019024, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-23370076, KAKENHI-PROJECT-23570212, KAKENHI-PROJECT-23710213, KAKENHI-PUBLICLY-24114511, KAKENHI-PLANNED-22125008
[Journal Article] Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases2012
- Author(s)
  De Piccoli G, Katou Y, Itoh T, et al
- Journal Title
  
  Mol Cell
  
  Volume: 45(5) Pages: 696-704
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] Culture-negative brain abscess with Streptococcus intermedius infection with diagnosis established by direct nucleotide sequence analysis of the 16S ribosomal RNA gene2012
- Author(s)
  N. Saito, A. Hida, Y. Koide, T. Ooka, Y. Ichikawa, J. Shimizu, A. Mukasa, H. Nakatomi, S. Hatakeyama, T. Hayashi, S. Tsuji
- Journal Title
  
  Intern. Med
  
  Volume: 51(2) Pages: 211-216
- NAID
  130002062067
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310144
[Journal Article] HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle.2012
- Author(s)
  Deardorff MA
- Journal Title
  
  Nature
  
  Volume: 489(7415) Issue: 7415 Pages: 313-7
- DOI
  10.1038/nature11316
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21681025, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-22300341, KAKENHI-PROJECT-23651243, KAKENHI-PROJECT-23710213, KAKENHI-PROJECT-24370076, KAKENHI-PROJECT-24650639, KAKENHI-PLANNED-22125008, KAKENHI-PLANNED-23114003, KAKENHI-PUBLICLY-23117527, KAKENHI-PUBLICLY-24114517
[Journal Article] Cohesin acetylation promotes sister chromatid cohesion only in association with the replication machinery.2012
- Author(s)
  Song J, Lafont A, Chen J, Wu FM, Shirahige K, Rankin S.
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  J Biol Chem.
  
  Volume: 5;287(41) Issue: 41 Pages: 34325-36
- DOI
  10.1074/jbc.m112.400192
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Rif1 is a global regulator of timing of replication origin firing in fission yeast2012
- Author(s)
  Hayano M, Kanoh Y, Matsumoto S, Renard-Guillet C, Shirahige K, Masai H
- Journal Title
  
  Genes & Dev
  
  Volume: 25 Issue: 2 Pages: 137-150
- DOI
  10.1101/gad.178491.111
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-23247031, KAKENHI-PROJECT-23657081, KAKENHI-PUBLICLY-24114520
[Journal Article] During replication stress Non-Smc-Element 5 is required for Smc5/6 complex functionality at stalled forks2012
- Author(s)
  Bustard DE, Menolfi D, Jeppsson K, Ball LG, Dewey SC, Shirahige K, Sjogren C, Branzei D, Cobb JA
- Journal Title
  
  J Biol Chem
  
  Volume: 25 Pages: 11374-11383
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001
[Journal Article] Culture-negative Brain Abscess with Streptococcus intermedius Infection with Diagnosis Established by Direct Nucleotide Sequence Analysis of the 16S Ribosomal RNA Gene2012
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- Journal Title
 
 Intern. Med.
 
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- DOI
 10.2169/internalmedicine.51.6419
- NAID
 130002062067
- ISSN
 0918-2918, 1349-7235
- Language
 English
- Peer Reviewed
- Data Source
 KAKENHI-PROJECT-23310144, KAKENHI-PROJECT-23591233
[Journal Article] ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex2011
- Author(s)
  B.Hu, T.Itoh, A.Mishra, Y.Katoh, K-L.Chan, W.Upcher, C.Godlee, M.B.Roig, K.Shirahige, K.Nasmyth
- Journal Title
  
  Curr.Biol.
  
  Volume: 21 Issue: 1 Pages: 12-24
- DOI
  10.1016/j.cub.2010.12.004
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009
[Journal Article] Chromosome length influences replication-induced topological stress2011
- Author(s)
  A.Kegel, H.B.Lindroos, T.Kanno, K.Jeppsson, L.Strom, Y.Katou, T.Itoh, K.Shirahige, C.Sjogren
- Journal Title
  
  Nature
  
  Volume: 471 Issue: 7338 Pages: 391-394
- DOI
  10.1038/nature09791
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009
[Journal Article] ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex Curr2011
- Author(s)
  B. Hu, T. Itoh, A. Mishra, Y. Katoh, K-L. Chan, W. Upcher, C. Godlee, M. B. Roig, K. Shirahige, and K. Nasmyth
- Journal Title
  
  Biol
  
  Volume: 21(1) Pages: 12-24
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] ATP hydrolysis is required for relocating cohesin from sites occupied by its Scc2/4 loading complex.2011
- Author(s)
  Hu B, Itoh T, Mishra A, Katoh Y, Chan KL, Upcher W, Godlee C, Roig MB, Shirahige K, Nasmyth K.
- Journal Title
  
  Current Biology
  
  Volume: 21(1) Pages: 12-24
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22125008
[Journal Article] Characterisation of the Porphyromonas gingivalis conjugative transposon CTnPg1 : determination of the integration site and the genes essential for conjugal transfer2011
- Author(s)
  M. Naito, K. Sato, M. Shoji, H. Yukitake, Y. Ogura, T. Hayashi, K. Nakayama
- Journal Title
  
  Microbiology
  
  Volume: 157 Pages: 2022-2032
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310144
[Journal Article] Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases2011
- Author(s)
  De Piccoli G, Katou Y, Itoh T, Nakato R, Shirahige K, Labib K
- Journal Title
  
  Mol Cell.
  
  Volume: 45 Issue: 5 Pages: 696-704
- DOI
  10.1016/j.molcel.2012.01.007
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003
[Journal Article] Chromosome length influences replication-induced topological stress.2011
- Author(s)
  Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C.
- Journal Title
  
  Nature
  
  Volume: 471(7338) Pages: 392-6
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22125008
[Journal Article] Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures2011
- Author(s)
  Saito, Y., Sato, K., Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing2011
- Author(s)
  Tanaka, S., Nakano, R., Katou, Y., Shirahige, K. and Araki, H.
- Journal Title
  
  Curr. Biol
  
  Volume: 21 Issue: 24 Pages: 2055-2063
- DOI
  10.1016/j.cub.2011.11.038
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20227004, KAKENHI-PROJECT-20370005, KAKENHI-PUBLICLY-22019039, KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003, KAKENHI-PROJECT-23710230
[Journal Article] Chromosome length influences replication-induced topological stress Nature2011
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  A. Kegel, H. B. Lindroos, T. Kanno, K. Jeppsson, L. Strom, Y. Katou, T. Itoh, K. Shirahige, et al
- Volume
  471(7338)
- Pages
  392-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] The replication checkpoint protects fork stability by releasing trans cribed genes from nuclear pores2011
- Author(s)
  Bermejo R, Capra T, Jossen R, Colosio A, Frattini C, Carotenuto W, Cocito A, Doksani Y, Klein H, Gomez-Gonzalez B, Aguilera A, Katou Y, Shirahige K, Foiani M
- Journal Title
  
  Cell
  
  Volume: 146 Issue: 2 Pages: 233-246
- DOI
  10.1016/j.cell.2011.06.033
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003
[Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011
- Author(s)
  Okada, Y., Saito, Y., Sato, K., Sakakibara, Y.
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 2 Pages: 54-54
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles2011
- Author(s)
  Gomez-Gonzalez B, Garcia-Rubio M, Bermejo R, Gaillard H, Shirahige K, Marin A, Foiani M, Aguilera A
- Journal Title
  
  EMBO J
  
  Volume: 30 Issue: 15 Pages: 3106-3119
- DOI
  10.1038/emboj.2011.206
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001
[Journal Article] Characterisation of the Porphyromonas gingivalis conjugative transposon CTnPg1 : determination of the integration site and the genes essential for conjugal transfer2011
- Author(s)
  M.Naito, et al
- Journal Title
  
  Microbiology
  
  Volume: 157 Issue: 7 Pages: 2022-2032
- DOI
  10.1099/mic.0.047803-0
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23310144, KAKENHI-PROJECT-23592704, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-23792110
[Journal Article] Chromosome length influences replication-induced topological stress.2011
- Author(s)
  Kegel A, Betts-Lindroos H, Kanno T, Jeppsson K, Strom L, Katou Y, Itoh T, Shirahige K, Sjogren C.
- Journal Title
  
  Nature
  
  Volume: 471(7338) Pages: 392-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] Rtt107 is required for recruitment of the SMC5/6 complex to DNA double strand breaks2011
- Author(s)
  Leung GP, Lee L, Schmidt TI, Shirahige K, Kobor MS
- Journal Title
  
  J Biol Chem
  
  Volume: 286 Issue: 29 Pages: 26250-26257
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  10.1074/jbc.m111.235200
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001
[Journal Article] Spoll-accessory proteins link double-strand break sites to the chromosome axis in early meiotic recombination2011
- Author(s)
  Panizza S, Mendoza MA, Berlinger M, Huang L, Nicolas A, Shirahige K, Klein F
- Journal Title
  
  Cell
  
  Volume: 146 Issue: 3 Pages: 372-383
- DOI
  10.1016/j.cell.2011.07.003
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009
[Journal Article] Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis2010
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  H. Maruyama, M. Shin, T. Oda, R. Matsumi, R. L. Ohniwa, T. Itoh, K. Shirahige, T. Imanaka, H. Atomi, S. H. Yoshimura, and K. Takeyasu
- Journal Title
  
  Mol Biol Cell
- NAID
  120002871160
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion EMBO2010
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  A. Kurze, K. A. Michie, S. E. Dixon, A. Mishra, T. Itoh, S. Khalid, L. Strmecki, K. Shirahige, C. H. Hearing, J. Lowe, and K Nasmyth
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- Data Source
  KAKENHI-PROJECT-21687001
[Journal Article] Accelerating Path-free XML Queries in RDBMS2010
- Author(s)
  Wu H, Saito TL, Morishita S
- Journal Title
  
  IPSJ Online Transaction
  
  Volume: 3 Pages: 206-217
- NAID
  130000418305
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Genome-wide DNA methylation analysis in cohesin mutant human cell Iines.2010
- Author(s)
  Liu J, Zhang Z, Bando M, Itoh T, Deardorff MA, Li JR, Clark D, Kaur M, Tatsuro K, Kline AD, Chang C, Vega H, Jackson LG, Spinner NB, Shirahige K, Krantz ID.
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  Nucleic Acids Res.
  
  Volume: 38 Pages: 5657-71
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands.2010
- Author(s)
  Pauli A, van Bemmel JG, Oliveira RA, Itoh T, Shirahige K, van, Steensel B, Nasmyth K.
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  Curr Biol.
  
  Volume: 20 Pages: 1787-98
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Sororin mediates sister chromatid cohesion by antagonizing Wapl.2010
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  Nishiyama T, Ladurner R, Schmitz J, Kreidl E, Schleiffer A, Bhaskara V, Bando M, Shirahige K, Hyman AA, Mechtler K, Peters JM.
- Journal Title
  
  Cell.
  
  Volume: 143 Pages: 737-49
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion.2010
- Author(s)
  Beckouet F, Hu B, Roig MB, Sutani T, Komata M, Uluocak P, Katis VL, Shirahige K, Nasmyth K.
- Journal Title
  
  Molecular Cell.
  
  Volume: 39(5) Pages: 689-99
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22125008
[Journal Article] An Smc3 acetylation cycle is essential for establishment of sister chromatid cohesion.2010
- Author(s)
  Beckouet F, Hu B, Roig MB, Sutani T, Komata M, Uluocak P, Katis VL, Shirahige K, Nasmyth K.
- Journal Title
  
  Mol Cell.
  
  Volume: 39 Pages: 689-699
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22221009
[Journal Article] Budding Yeast Wpl1(Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion- Establishing Reaction2009
- Author(s)
  T. Sutani, T. Kawaguchi, R. Kanno, T. Itoh, K. Shirahige
- Journal Title
  
  Curr. Biol 19
  
  Pages: 492-497
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Transcriptional Dysregulation in NIPBL and Cohesin Mutant Human Cells.2009
- Author(s)
  J. Liu, Z. Zhang, M. Bando, T. Itoh, M. A. Deardorff, D. Clark, M. Kaur, S. Tandy, T. Kondoh, E. Rappaport, N. B. Spinner, H. Vega, L. G. Jackson, K. Shirahige, I. D. Krantz
- Journal Title
  
  PLoS Biology (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Yeast Wpl1 (Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion-Establishing Reaction.2009
- Author(s)
  T.Sutani, T.Kawaguchi, R.Kanno, T.Itoh, K.Shirahige
- Journal Title
  
  Curr.Biol. 19
  
  Pages: 492-497
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Budding Yeast Wpll(Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion-Establishing Reaction.2009
- Author(s)
  T. Sutani, T. Kawaguchi, R. Kanno, T. Itoh, K. Shirahige
- Journal Title
  
  Curr. Biol 19
  
  Pages: 492-497
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Genome-Organizing Factors Top2 and Hmo1 Prevent Chromosome Fragility at Sites of S phase Transcription2009
- Author(s)
  R.Bermejo, T.Capra, V.Gonzales-Huici, D.Fachinetti, A.Cocito, G.Natoli, Y.Katou, H.Mori, K.Kurokawa, K.Shirahige, M.Foiani
- Journal Title
  
  Cell 138
  
  Pages: 870-884
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Architectural roles of multiple chromatin insulators at the humanapolipoprotein gene cluster.2009
- Author(s)
  T. Mishiro, K. Ishihara, S. Hino, S. Tsutsumi, H. Aburatani, K. Shirahige, Y. Kinoshita, M. Nakao
- Journal Title
  
  EMBOJ. (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Krantz Transcriptional Dysregulation in NIPBL and Cohesin Mutant Human Cells2009
- Author(s)
  Liu, Z., Zhang, M., Bando, T., Itoh, M.A., Deardorff, D., Clark, M., Kaur, S., Tandy, T., Kondoh, E., Rappaport, N.B., Spinner, H., Vega, L.G., Jackson, K., Shirahige, I.D.
- Journal Title
  
  PLoS Biology (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Transcriptional dysregulation in NIPBL and cohesin mutant human cells.2009
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  J.Liu, Z.Zhang, M.Bando, T.Itoh, M.A.Deardorff, D.Clark, M.Kaur, S.Tandy, T.Kondoh, E.Rappaport, N.B.Spinner, H.Vega, L.G.Jackson, K.Shirahige, I.D.Krantz.
- Journal Title
  
  PLoS Biol. 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe.2008
- Author(s)
  K.Nakamura, A.Okamoto, Y.Katou, C.Yadani, T.Shitanda, C.Kaweeteerawat, T.S.Takahashi, T.Itoh, K.Shirahige, H.Masukata, T.Nakagawa
- Journal Title
  
  EMBO J. 27
  
  Pages: 3036-3046
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Identification of cis-acting sites for condens in loading onto budding yeast chromosomes.2008
- Author(s)
  C.D' Ambrosio, C.K.Schmidt, Y.Katou, G.Kelly, T.Itoh, K.Shirahige, F.Uhlmann
- Journal Title
  
  Genes Dev. 22
  
  Pages: 2215-2227
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Cohesin mediates transcriptional insulation by CCCTC-binding factor.2008
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  Wendt KS#, Yoshida K#, Itoh T#, Bando M, Koch B, Schirghuber E, Tsutsumi S, Nagae G, Ishihara K, Mishiro T, Yahata K, Imamoto F, Aburatani H, Nakao M, Imamoto N, Maeshima K, Shirahige K*, Peters JM*. (#Equally Contributed Author, *Shared Corresponding Author)
- Journal Title
  
  Nature (Article) 451
  
  Pages: 796-801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Mrcl and DNA polymerase function together in linking DNA replication and the S phase checkpoint2008
- Author(s)
  H.Lou, M.Komata, Y.Katou, Z.Guan, C.C.Reis, M.Budd, K.Shirahige, J.L.Campbelll
- Journal Title
  
  Mol.Cell 32
  
  Pages: 106-117
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Mrc1 and DNA polymerase ε function together in linking DNA replication and the S phase checkpoint2008
- Author(s)
  H. Lou, M. Komata, Y. Katou, Z. Guan, C. C. Reis, M. Budd, K. Shirahige. J. L. Campbelll
- Journal Title
  
  Mol. Cell 32
  
  Pages: 106-117
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Rad5 1 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe.2008
- Author(s)
  K. Nakamura, A. Okamoto, Y. Katou, C. Yadani, T. Shitanda, C. Kaweeteerawat, T. S. Takahashi, T. Itoh, K, Shirahige. H. Masukata, T. Nakagawa
- Journal Title
  
  EMBOJ. 27
  
  Pages: 3036-3046
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Cohesin mediates transcriptional insulation by CCCTC-binding factor.2008
- Author(s)
  K.S.Wendt, K.Yoshida, T.Itoh, M.Bando, B.Koch, E.Schirghuber, S.Tsutsumi, G.Nagae, K.Ishihara, T.Mishiro, K.Yahata, F.Imamoto, H.Aburatani, M.Nakao, N.Imamoto, K.Maeshima, K.Shirahige, J.-M.Peters
- Journal Title
  
  Nature (article) 451
  
  Pages: 796-801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast.2008
- Author(s)
  M.Sadaie, R.Kawaguchi, Y.Ohtani, F.Arisaka, K.Tanaka, K.Shirahige, J.Nakayama
- Journal Title
  
  Mol Cell Biol. 28
  
  Pages: 6973-6988
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast.2008
- Author(s)
  M.Nishizawa, T.Komai, Y.Katou, K.Shirahige, T.Itoh, A.Toh-E
- Journal Title
  
  PLoS Biol. 6
  
  Pages: 2817-2830
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Identification of cis-actmg sites for condensin loading onto budding yeast chromosomes2008
- Author(s)
  C. D'Ambrosio, C. K. Schmidt, Y. Katou, G. Kelly, T. Itoh, K. Shirahige., F. Uhlmarui
- Journal Title
  
  Genes Dev. 22
  
  Pages: 2215-2227
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Cohesin mediates transcriptional insulation by CCCTC-binding factor2008
- Author(s)
  K.S. Wendt*, K. Yoshida*, T. Itoh*, M. Bando, B. Koch, E. Schirghuber, S. Tsutsumi, G. Nagae, K. Ishihara, T. Mishiro, K. Yahata, F. Imamoto, H. Aburatani, M. Nakao, N. Imamoto, K. Maeshima, K. Shirahige+, J.M. Peters
- Journal Title
  
  Nature 451
  
  Pages: 796-801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Perturbation of the activity of replication origin by meiosis specific transcription2007
- Author(s)
  S.Mori, K.Shirahige
- Journal Title
  
  J.Biol.Chem. 282
  
  Pages: 4447-4452
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Meiotic recombination-related DNA synthesis and its implications for cross-over and non-cross-over recombinant formation.2007
- Author(s)
  M.Terasawa, H.Ogawa, Y.Tsukamoto, M.Shinohara, K.Shirahige, N.Kleckner, T.Ogawa
- Journal Title
  
  Proc Natl Acad Sci U S A. 104
  
  Pages: 5965-5970
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Postreplicative formation of cohesion is required for repair and induced by a single DNA break.2007
- Author(s)
  L.Strom L, C.Karlsson, H.B.Lindroos, S.Wedahl, Y.Katou, K.Shirahige, C.Sjogren
- Journal Title
  
  Science. 317
  
  Pages: 242-245
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Identification of novel androgen response genes in prostate cancer cells by coupling chromatin immunoprecipitation and genomic microarray analysis.2007
- Author(s)
  K.Takayama, K.Kaneshiro, S.Tsutsumi, K.Horie-Inoue, K.Ikeda, T.Urano, N.Ijichi, Y.Ouchi, K.Shirahige, H.Aburatani, S.Inoue
- Journal Title
  
  Oncogene. 26
  
  Pages: 4453-4463
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast.2007
- Author(s)
  M.Hayashi, Y.Katou, T.Itoh, M.Tazumi, Y.Yamada, T.Takahashi, T.Nakagawa, K.Shirahige, H.Masukata
- Journal Title
  
  EMBO J. 26
  
  Pages: 1327-1339
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.2007
- Author(s)
  Kasahara K, Ohtsuki K, Ki S, Aoyama K, Takahashi H, Kobayashi T, Shirahige K, Kokubo T.
- Journal Title
  
  Mol Cell Biol. 27
  
  Pages: 6686-6705
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting.2007
- Author(s)
  M.T.Ocampo-Hafalla, Y.Katou, K.Shirahige, F.Uhlmann
- Journal Title
  
  Chromosoma. 116
  
  Pages: 531-544
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] The kinetochore proteins Pcsl and Mde4 and heterochromatin are required to prevent merotelic orientation.2007
- Author(s)
  Gregan J, Riedel CG, Pidoux AL, Katou Y, Rumpf C, Schleiffer A, Kearsey SE, Shirahige K, Allshire RC, Nasmyth K.
- Journal Title
  
  Curr Biol. 17
  
  Pages: 1190-1200
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Topl-and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation.2007
- Author(s)
  Bermejo R, Doksani Y, Capra T, Katou YM, Tanaka H, Shirahige K*, Foiani M*. (Shared Corresponding Author)
- Journal Title
  
  Genes Dev. 21
  
  Pages: 1921-1936
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] An integrated map of p53-binding sites and histone modification in the human2007
- Author(s)
  K.Kaneshiro, S.Tsutsumi, S.Tsuji, K.Shirahige, H.Aburatani
- Journal Title
  
  ENCODE regions Genomics 89
  
  Pages: 178-188
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] The Kinetochore Proteins Pcs1 and Mde4 and Heterochromatin Are Required to Prevent Merotelic Orientation.2007
- Author(s)
  J.Gregan, C.G.Riedel, A.L.Pidoux, Y.Katou, C.Rumpf, A.Schleiffer, S.E.Kearsey, K.Shirahige, R.C.Allshire, K.Nasmyth
- Journal Title
  
  Curr Biol 17
  
  Pages: 1190-1200
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Terasawa M, Ogawa H, Tsukamoto Y, Shinohara M, Shirahige K, Kleckner N, Ogawa T.2007
- Author(s)
  Terasawa M, Ogawa H, Tsukamoto Y, Shinohara M, Shirahige K, Kleckner N, Ogawa T.
- Journal Title
  
  Proc Natl Acad Sci USA 104
  
  Pages: 5965-5970
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.2007
- Author(s)
  K.Kasahara, K.Ohtsuki, S.Ki, K.Aoyama, H.Takahashi, T.Kobayashi, K.Shirahige, T.Kokubo
- Journal Title
  
  Mol Cell Biol. 27
  
  Pages: 6686-6705
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Mrell mediates gene regulation in yeast spore development.2007
- Author(s)
  K.Kugou, H.Sasanuma, K.Matsumoto, K.Shirahige, K.Ohta
- Journal Title
  
  Genes Genet Syst. 82
  
  Pages: 21-33
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Abnormality in initiation program of DNA replication is monitored by the highly repetitive rDNA array on chromosome XII in budding yeast2007
- Author(s)
  S.Ide, K.Watanabe, H.Watanabe, K.Shirahige, T.Kobayashi, H.Maki
- Journal Title
  
  Mol.Cell.Biol. 27
  
  Pages: 568-578
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Ohta Mrell mediates gene regulation in yeast spore development.2007
- Author(s)
  K.Kugou, H.Sasanuma, K.Matsumoto, K.Shirahige, K.
- Journal Title
  
  Genes Genet Syst. 82
  
  Pages: 21-33
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Genome-wide localization of pre-RC sites and identification of replication orogines in fission yeast.2007
- Author(s)
  M.Hayashi, Y.Katou, T.Itoh, M.tazumi, Y.Yamada, T.takahashi, T.Nakagawa, K.Shirahige, H.Masukata
- Journal Title
  
  EMBO J. 26
  
  Pages: 1327-1339
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation.2007
- Author(s)
  R.Bermejo, Y.Doksani, T.Capra, Y.M.Katou, H.Tanaka, K.Shirahige, M.Foiani
- Journal Title
  
  Genes Dev. 21
  
  Pages: 1921-1936
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Chromosomal Association of the Smc5/6 Complex Reveals that It Functions in Differently Regulated Pathways.2006
- Author(s)
  H.Betts Lindroos, L.Strom, T.Itoh, Y.Katou, K.Shirahige^*, C.Sjogren^* (*equally contributed author).
- Journal Title
  
  Mol Cell 22
  
  Pages: 755-767
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Protein Phosphatase 2A protects centromeric sister chromatid cohesion2006
- Author(s)
  C.G.Riesel, V.L.Katis, Y.Katou, S.Mori, T.Itoh, W.Helmhart, M.Galova, M.Petronczki, J.Gregan, B.Cetin, I.Mudrak, E.Ogris, K.Mechtler, L.Pelletier, F.Buchholz, K.Shirahige, K.Nasmyth
- Journal Title
  
  Nature (Article) 441
  
  Pages: 53-61
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeart.2006
- Author(s)
  D.Q.Ding, N.Sakurai, Y.Katou, T.Itoh, K.Shirahige, T.Haraguchi, Y.Hiraoka.
- Journal Title
  
  J Cell Biol. 174
  
  Pages: 499-508
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Monopolar attachment of sister kinetochores at meiosis I requires casein kinase I.2006
- Author(s)
  M.Petronczki, J.Matos., S.Mori, J.Greham, A.Bogdanova, M.Schwickart, K.Mechtler, K.Shirahige, W.Zachariae, K.Nasmyth
- Journal Title
  
  Cell 126
  
  Pages: 1049-1064
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Monopolar attachment of sister kinetochores at meiosis I requires casein kinase 1.2006
- Author(s)
  M.Petronczki, J.Matos, S.Mori, J.Gregan, A.Bogdanova, M.Schwickart, K.Mechtler, K.Shirahige, W.Zachariae, K.Nasmyth
- Journal Title
  
  Cell 126
  
  Pages: 1049-1064
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast.2006
- Author(s)
  D.Q.Ding, N.Sakurai, Y.Katou, T.Itoh, K.Shirahige, T.Haraguchi, Y.Hiraoka.
- Journal Title
  
  J Cell Biol. 174
  
  Pages: 499-508
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Evidence that Loading of Cohesin Onto Chromosomes Involves Opening of Its SMC Hinge2006
- Author(s)
  S.Gruber, P.Arumugam, Y.Katou, D.Kuglitsch, W.Helmhart, K.Shirahige, K.Nasmyth
- Journal Title
  
  Cell 127
  
  Pages: 523-537
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Different requirements for the association of ATR-ATRIP and 9-1-1 to the stalled replication forks.2006
- Author(s)
  Y.Kanoh, K.Tamai, K.Shirahige.
- Journal Title
  
  Gene. 377
  
  Pages: 88-95
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Establishment of Sister Chromatid Cohesion at the S.cerevisiae Replication Fork.2006
- Author(s)
  A.Lengronne, J.McIntyre, Y.Katou, Y.Kanoh, K.P.Hopfner, K.Shirahige, F.Uhlmann
- Journal Title
  
  Mol Cell. 23
  
  Pages: 787-799
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Protein Phosphatase 2A protects centromeric sister chromatid cohesion.2006
- Author(s)
  C.G.Riedel, V.L.Katis, Y.Katou, S.Mori, T.Itoh, W.Helmhart, M.Galova, M.Petronczki, J.Gregan, B.Cetin, I.Mudrak, E.Ogris, K.Mechtler, L.Pelletier, F.Buchholz, K.Shirahige, K.Nasmyth.
- Journal Title
  
  Nature (Article) 441
  
  Pages: 53-61
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Screening for candidate genes involved in tolerance to organic solvents in yeast.2006
- Author(s)
  K.Matsui, T.Hirayama, K.Kuroda, K.Shirahige, T.Ashikari, M.Ueda.
- Journal Title
  
  Appl Microbiol Biotechnol. 71
  
  Pages: 75-79
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.2006
- Author(s)
  Y.Katou, K.Kaneshiro, H.Aburatani, K.Shirahige.
- Journal Title
  
  METHODS IN ENZYMOLOGY "DNA Repair"(edited by J.Campbell) vol.409, chapter 23
  
  Pages: 389-410
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Genomic Approach for the Understanding of Dynamic Aspect of Chromosome Behavior.2006
- Author(s)
  Y.Katou, K.Kaneshiro, H.Aburatani, K.Shirahige.
- Journal Title
  
  Methods in Enzymology, Elsevier Life Sciences (CA) "DNA Repair"(edited by J.Campbell) vol.409,chapter 23
  
  Pages: 389-410
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Chromosomal Association of the Smc5/6 Complex Reveals that It Functions in Differently Regulated Pathways.2006
- Author(s)
  H.Betts Lindroos, L.Strom, T.Itoh, Y.Katou, K.Shirahige, C.Sjogren
- Journal Title
  
  Mol Cell. 22
  
  Pages: 755-767
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] A checkpoint control linking meiotic S phase and recombination initiation in fission yeast2005
- Author(s)
  Y.Tonami, H.Murakami, K.Shirahige, M.Nakanishi.
- Journal Title
  
  .Proc.Natl.Acad.Sci.U.S.A. 102
  
  Pages: 5797-801
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Glucose-dependent cell size is regulated by a G protein-coupled receptor system in yeast Saccharomyces cerevisiae.2005
- Author(s)
  H.Tamaki, C.W.Yun, T.Mizutani, T.Tsuzuki, Y.Takagi, M.Shinozaki, Y.Kodama, K.Shirahige, H.Kumagai.
- Journal Title
  
  Genes Cells. 10
  
  Pages: 193-206
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Journal Article] Identification and characterization of rns4/vps32 mutation in the RNase T1 expression-sensitive strain of Saccharomyces cerevisiae : Evidence for altered ambient response resulting in transportation of the secretory protein to vacuoles.2005
- Author(s)
  K.Unno, P.R.Juvvadi, H.Nakajima, K.Shirahige, K.Kitamoto.
- Journal Title
  
  FEMS Yeast Res. 5
  
  Pages: 801-812
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18101007
[Patent] 遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法2018
- Inventor(s)
  岩﨑博史、坪内英生、伊藤武彦，梶谷嶺，リハッティマルダン、韓龍雲
- Industrial Property Rights Holder
  東京工業大学
- Industrial Property Rights Type
  特許
- Filing Date
  2018
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Patent] 遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法2017
- Inventor(s)
  岩崎博史,伊藤武彦
- Industrial Property Rights Holder
  岩崎博史,伊藤武彦
- Industrial Property Rights Type
  特許
- Industrial Property Number
  2018-077857
- Filing Date
  2017
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] ボルバキア感染アワノメイガ細胞のscMultiome解析2024
- Author(s)
  松田(今井) 典子、室智大、福井崇弘、木内隆史、豊田敦、金井昭教、鈴木穣、伊藤武彦、勝間進
- Organizer
  日本蚕糸学会第 94 回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 抗酸化タンパク質セレノプロテインによる造血制御機構2024
- Author(s)
  青山有美、山嵜博未、西村耕太郎、臧維嘉、小池優依、伊藤裕美、福本未記、高折晃史、井上大地.
- Organizer
  第28回造血器腫瘍研究会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Inclusive Living Subcellular Sequencing by iSCseq Rendering Physical, Physiological and Pathological Features in Osteoclast Diversity.2024
- Author(s)
  H. Okada、Y. Terui、Y. Omata、M. Seki、S. Tani、A. Terashima、S. Kanazawa、M. Hosonuma、J. Miyahara、K. Makabe、S. Onodera、F. Yano、H. Kajiya、F. Gori、T. Saito、K. Okabe、Y. Suzuki、R. Baron、U. Chung、S. Tanaka、H. Hojo.
- Organizer
  Gordon Research Conference “Bones and Teeth” 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 個体群動態が語る適応放散 ―ニューカレドニアのシソ科 Oxera 属における種間比較―2024
- Author(s)
  坂野慧悟、池田隆介、河合良弥、伊藤僚祐、野口英樹、寺内真、GILDAS GATEBLE、陶山佳久、井鷺裕司
- Organizer
  第71回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] セイヨウミツバチのニコチン性アセチルコリン受容体の機能的発現と薬理特性に対する補助因子の効果2024
- Author(s)
  伊原誠、高山浩一、伊藤稜、森澄海人、武林真由花、江川瑠夏、山本新菜、木村裕紀、松田一彦
- Organizer
  日本農芸化学会2024年度大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Inclusive living subcellular sequencing spotlights physical physiological and human pathological features in osteoimmune diversity.2024
- Author(s)
  Hiroyuki Okada、Yuta Terui、Asuka Terashima、Masahide Seki、Sanshiro Kanazawa、Francesca Gori、Taku Saito、Yutaka Suzuki、Roland Baron、Ung-il Chung、Sakae Tanaka、Hironori Hojo.
- Organizer
  AGBT 2024
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 異質 4 倍体ワサビのゲノム解析2024
- Author(s)
  田中裕之、奈良雅大、豊田敦、山根京子、伊藤武彦
- Organizer
  日本育種学会第145回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] シロイヌナズナの葉の発生分化に関わるAS2と核小体タンパク質は特定の遺伝子のDNAメチル化維持に関与する2023
- Author(s)
  小島晶子岩川秀和日比野哲紀高橋広夫安藤沙友里笹部美智子伊藤正樹町田泰則町田千代子
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] シロイヌナズナの葉の発生分化に関わるAS2と核小体タンパク質によるDNAメチル化維持機能の解明2023
- Author(s)
  小島晶子、岩川秀和、日比野哲紀、高橋広夫、安藤沙友里、笹部美知子、伊藤正樹、町田泰則、町田千代子
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Chromosome conformation affects the clustered breakage and complex chromosomal rearrangement in germline2023
- Author(s)
  Hidehito Inagaki、Takema Kato、Atsushi Toyoda、Yoshio Makita、Hiroki Kurahashi
- Organizer
  ICHG 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] キタグニコウキクサにおける光周期依存性休眠の誘導に関与する遺伝子群の解析2023
- Author(s)
  伊藤照悟、小山時隆
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] In vitro transcriptomic remodeling of cardiomyocytes caused by Trypanosoma cruzi2023
- Author(s)
  Katherine Candray-Medina、Yu Nakagama、Shun Nakagama、Masamichi Ito、Yu Michimuko、Evariste Tshibangu-Kabamba、Akira Kaneko、Yasutoshi Kido
- Organizer
  第92回日本寄生虫学会大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Interventional and integrative subcellular sequencing (i2scseq) clarifies the multi differentiation stages embedded inside mature osteoclast2023
- Author(s)
  Hiroyuki Okada、Yuta Terui 、Yasunori Omata、Masahide Seki、Shoichiro Tani、Junya Miyahara、Kenta Makabe、Asuka Terashima、Sanshiro Kanazawa、Masahiro Hosonuma、Shoko Onodera、Fumiko Yano、Hiroshi Kajiya、Taku Saito、Yutaka Suzuki、Koji Okabe、Roland Baron、Sakae Tanaka、Ung-il Chung、Hironori Hojo
- Organizer
  ASBMR 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 海底下深部堆積物における微生物叢の成り立ちと適応2023
- Author(s)
  星野辰彦、土居秀幸、伊藤武彦
- Organizer
  第36回日本微生物生態学会
- Data Source
  KAKENHI-PROJECT-23K22618
[Presentation] 非モデル寄生蜂を用いたマルチオミクス解析および寄生関連遺伝子の同定2023
- Author(s)
  Kamiyama、Takumi、Shimada、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Novel venom proteins of the parasitoid wasp Asobara japonica play an essential role in Drosophila epithelial cell death2023
- Author(s)
  Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  The 6th Asian-Pacific Drosophila Research Conference (APDRC)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] キタグニコウキクサの長期成長様式解析による、短日依存性休眠誘導の日長認識部位と休眠芽発達機構の考察2023
- Author(s)
  伊藤照悟、小山時隆
- Organizer
  日本睡眠学会第45回定期学術集会・第30回日本時間生物学会学術大会合同大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Association of Rif1 with nuclear membrane is essential for genome-wide replication timing regulation2023
- Author(s)
  Tomohiro Iguchi、Sayuri Ito、Naoko Kakusho、Rino Fukatsu、Kenji Moriyama、Asako Sawano、Asami Oji、Mikihiro Shibata、Atsushi Miyawaki、Ichiro Hiratani、Hiroyuki Sasanuma and Hisao Masai
- Organizer
  CSHL Meeting 2023 on Eukaryotic DNA Replication & Genome Maintenance
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ストックのゲノム情報の整備と八重鑑別系統の育成に関与した遺伝子変異の探索2023
- Author(s)
  峰松美祈、田中裕之、伊藤武彦、鈴木穣、篠澤章久、田崎啓介、中塚貴司
- Organizer
  令和５年園芸学会春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Subcellular sampling and sequencing by iSCseq connects transcriptomics with morphological, physical, and physiological findings in osteoimmunology.2023
- Author(s)
  Hiroyuki Okada、Yuta Terui、Yasunori Omata、Masahide Seki 、Shoichiro Tani、Junya Miyahara、Kenta Makabe、Asuka Terashima、Sanshiro Kanazawa、Masahiro Hosonuma、Shoko Onodera、Fumiko Yano、Hiroshi Kajiya、Taku Saito、Yutaka Suzuki、Koji Okabe、Roland Baron、Sakae Tanaka、Ung-il Chung、Hironori Hojo.
- Organizer
  Cold Spring Harbor Laboratory Meeting “Single Cell Analyses 2023”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ワサビゲノム解読の現状2023
- Author(s)
  田中裕之、堀立樹、山本祥平、豊田敦、矢野健太郎、山根京子、伊藤武彦
- Organizer
  日本育種学会第143回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] モモ 25 品種の比較ゲノム解析2023
- Author(s)
  衣川達己、谷澤靖洋、中村保一、伊藤武彦、田中裕之、平川英樹、篠澤章久、馬場正、小田賢司、井出大輔、大和勝幸、石丸恵
- Organizer
  令和５年園芸学会春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Long term monitoring of growth and turion development of Lemna turionifera colonies revealed the signal perception region for the photoperiodic dormancy establishment2023
- Author(s)
  Tokitaka Oyama、Shogo Ito
- Organizer
  Taiwan-Japan Plant Biology 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Effects of cofactors on functional expression of Drosophila melanogaster nicotinic acetylcholine receptors in Xenopus laevis oocytes and neonicotinoid actions2023
- Author(s)
  Ryo Ito、Koichi Takayama、Makoto Ihara、David B. Sattelle、and Kazuhiko Matsuda
- Organizer
  Control of Human Disease Vectors, Pests and Parasites Meeting the challenges of resistance and sustainability (Cambridge, UK)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Gonadal stem cell: a possible solution of futuristic aquaculture.2023
- Author(s)
  Tapas Chakraborty、Sota Kawao、Kodai mizumura、Akira Eguchi、Sipra Mohapatra、Takehiko Itoh、Atsushi Toyoda、Naoki Nagano、Kohei Ohta、Michiya Matsuyama
- Organizer
  令和５年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Subcellular sequencing connects transcriptomics with physical and physiological findings.2023
- Author(s)
  H. Okada、Y. Terui、Y. Omata、M. Seki、S. Tani、A. Terashima、S. Kanazawa、M. Hosonuma、J. Miyahara、K. Makabe、S. Onodera、F. Yano、H. Kajiya、F. Gori、T. Saito、K. Okabe、Y. Suzuki、R. Baron、U. Chung、S. Tanaka、H. Hojo.
- Organizer
  Cell Bio 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Regulation of replication timing and DNA repair by nuclear membrane tethering of Rif12023
- Author(s)
  Hisao Masai、Tomohiro Iguchi、Sayuri Ito、Mikhiko Shibata、Naoko Kakusho、Rino Fukatsu、Asami Oji、Ichiro Hiratani、Hiroyuki Sasanuma
- Organizer
  The 14th International Symposium on DNA Damage Response & Human Disease (isDDRHD-2023)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] AGO3 HITS-CLIP analysis identifies miRNA target genes2023
- Author(s)
  Tomohito Yamasaki
- Organizer
  The 20th International Conference on the Cell and Molecular Biology of Chlamydomonas
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Circadian-period variation underlies the local adaptation of photoperiodism2023
- Author(s)
  Tomoaki Muranaka、Shogo Ito、Hiroshi Kudoh、Tokitaka Oyama
- Organizer
  Taiwan-Japan Plant Biology 2023
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Analysis of Genes Expressed during the Flowering and the Dormancy Induction in Duckweeds2023
- Author(s)
  Shogo Ito、Tokitaka Oyama
- Organizer
  Plant and animal genome conference PAG30
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Identification of novel venom proteins required for Drosophila epithelial cell death by the parasitoid wasp Asobara japonica2023
- Author(s)
  Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  The 27th European Drosophila Research Conference(EDRC 2023)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Knowledge and remaining questions of adult pluripotent stem cell in freshwater planarians.2023
- Author(s)
  Makoto Kashima、Rei Komura、Rei Kajitani、Takehiko Itoh、Atsushi Toyoda
- Organizer
  第56回日本発生生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] スルピリドおよびプロラクチンを介した雄マウスの仔マウスへの攻撃行動調節2022
- Author(s)
  天野大樹、濱崎友美、伊藤和貴、南雅文
- Organizer
  第35回日本行動神経内分泌研究会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 社会環境依存型の性転換における脳下垂体の関与2022
- Author(s)
  山本優芽、花井匠磨、Chakraborty Tapas、豊田敦、伊藤武彦、松山倫也、長濱嘉孝、太田耕平
- Organizer
  令和４年度日本水産学会秋季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ザゼンソウ熱産生組織における包括的なトランスクリプトーム及びメタボローム解析2022
- Author(s)
  谷本　悠、伊藤　菊一
- Organizer
  第95回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Drosophila METTL1 Induces m7G into tRNA to Preserve Complete Fertility2022
- Author(s)
  Shunya Kaneko、Keita Miyoshi、Shu Kondo、Atsushi Toyoda、Makoto Terauchi、Hideki Noguchi、Kuniaki Saito
- Organizer
  第23回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 免疫システムがもたらしたシクリッドの唇肥大化平行進化2022
- Author(s)
  畑島諒, 待井長敏, 豊田敦, 梶谷嶺, 長澤竜樹, 伊藤武彦, 二階堂雅人
- Organizer
  第2回日本遺伝学会春の分科会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 周期ゼミ幼虫におけるトランスクリプトーム解析2022
- Author(s)
  SAITO, N., YAMAMOTO, S., KAKISHIMA, S., OKUZAKI, Y., RASMUSSEN, A., KRITSKY, G., COOLEY, J., SIMON, C., SOTA, T.
- Organizer
  第69回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 日本人集団３万人における尿酸再吸収輸送体遺伝子URAT1/SLC22A12の機能消失型変異がもたらす影響についての臨床遺伝学的検討2022
- Author(s)
  中山昌喜、河村優輔、豊田優、清水聖子、染谷真澄、田中里沙、森友理乃、今給黎敏彦、岩澤聡子、中島宏、角田正史、伊藤敬一、有澤孝吉、嶽崎俊郎、田中恵太郎、高田龍平、市田公美、若井建志、四ノ宮成祥、松尾洋孝
- Organizer
  第16回トランスポーター研究会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Venom action on host and non-host Drosophila for the parasitism by the parasitoid wasp Asobara japonica2022
- Author(s)
  Takumi Kamiyama、Hitoha Mori、Naoki Tani、Akira Nakamura、Yuko Shimada-Niwa、Ryusuke Niwa
- Organizer
  15th Japan Drosophila Research Conference
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] キタグニコウキクサの光周期依存性の休眠誘導と休眠芽形成時に機能する遺伝子群の解析2022
- Author(s)
  伊藤照悟、小山時隆
- Organizer
  第29回時間生物学会学術大会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] METTL1-mediated m7G modification regulates tRNA expression level to preserve complete fertility in Drosophila melanogaster2022
- Author(s)
  Shunya KANEKO、Keita MIYOSHI、Shu KONDO、Atsushi TOYODA、Makoto TERAUCHI、Hideki NOGUCHI、Kuniaki SAITO
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] A universal subcuticular bacterial symbiont of the coral predator, crown-of-thorns starfish2022
- Author(s)
  Naohisa WADA、Hideaki YUASA、Rei KAJITANI、Yasuhiro GOTOH、Yoshitoshi OGURA、Dai YOSHIMURA、Atsushi TOYODA、Sen-Lin TANG、Yukio HIGASHIMURA、Hugh SWEATMAN、Zac FORSMAN、Omri BRONSTEIN、Gal EYAL、Nalinee THONGTHAM、Kei Zaitsu、Tetsuya HAYASHI、Takehiko ITOH、Nina YASUDA
- Organizer
  Australian Marine Science Association 2022
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Involvement of the pituitary gland in social-environment-dependent sex change2022
- Author(s)
  Yume Yamamoto、Shoma Hanai、Tapas Chakraborty、Astushi Toyoda、 Takehiko Itoh、Michiya Matsuyama、Yoshitaka Nagahama、Kohei Ohta
- Organizer
  International Conference on Responsible Aquaculture and Sustainable Fisheries Interact
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Gonadal stem cells in a sex changing fish, Pseudolabrus sieboldi.2022
- Author(s)
  Kodai Mizumura、Tapas Chakraborty、Kazuki Tateyama、Shoma Hanai、Yoshihara Yuya、Yume Yamamoto、Sipra Mohapatra、Yumiko Yamasaki、Atsushi Toyota、 Ito Takehiko、Michiya Matsuyama、Yoshitaka Nagahama、Kohei Ohta
- Organizer
  The International Symposium "Totipotency and Germ Cell Development"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Differential immune responsiveness between host and non-host Drosophila species against the parasitoid wasp Asobara japonica2022
- Author(s)
  Hitoha Mori、Takumi Kamiyama、Yuko Shimada-Niwa、Ryusuke Niwa
- Organizer
  15th Japan Drosophila Research Conference
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] シロイヌナズナの新規染色体部分的重複変異体における遺伝子発現変動とクロマチン動態2022
- Author(s)
  杉田和陽、サンジャヤアルビン、西嶋遼、田中裕之、伊藤武彦、村井耕二、阿部知子、風間裕介
- Organizer
  日本遺伝学会第94回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 短日性アオウキクサの花成限界日長が日本で多様化する理由とその分子機構2022
- Author(s)
  村中智明、伊藤照悟、工藤洋、小山時隆
- Organizer
  日本植物学会第86回大会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Effect of the chromatin domains on clustered breakpoint formation in complex chromosomal rearrangement2022
- Author(s)
  Hidehito Inagaki、Takema Kato、Atsushi Toyoda、Yoshio Makita、Hiroki Kurahas
- Organizer
  日本人類遺伝学会第67回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 卵を食べるシクリッドの系統的起源2022
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 肥厚した唇を持つヴィクトリア湖シクリッドの進化史推定2022
- Author(s)
  中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 内分泌撹乱物質を曝露した胎仔マウス脳における神経系遺伝子の発現変動2022
- Author(s)
  細瀬摩利、白根共太、石橋知佳、伊藤琴音、田川幸樹、松島綾美
- Organizer
  令和４年度日本生化学会九州支部例会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] m7G RNA modification by METTL1 stabilizes tRNAs and maintains fertility via controlling spermatogenesis in Drosophila melanogaster2022
- Author(s)
  Shunya KANEKO、Keita MIYOSHI、Shu KONDO、Atsushi TOYODA、Makoto TERAUCHI、Hideki NOGUCHI、Kuniaki SAITO
- Organizer
  Cold Spring Harbor Asia, RNA Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 染色体再編成が植物ゲノムに及ぼす影響2022
- Author(s)
  杉田和陽、サンジャヤアルビン、西嶋遼、田中裕之、伊藤武彦、阿部知子、風間裕介
- Organizer
  北陸植物学会第12回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] カタクチイワシEngraulis japonicusをモデルとした生殖腺の性差に関わるエピジェネティック修飾の解析法2022
- Author(s)
  江藤悠平, Tapas Chakraborty, 北野載, 豊田敦, 伊藤武彦, 松山倫也, 太田耕平
- Organizer
  令和4年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 尿酸輸送体遺伝子URAT1/SLC22A12の機能消失型変異の影響 : 日本人集団4,993名における低尿酸血症の遺伝子解析2021
- Author(s)
  中山昌喜, 河村優輔, 豊田優, 清水聖子, 川口真, 鳥羽美帆, 田中里沙, 竹内研時, 岡田理恵子, 久保陽子, 今給黎敏彦, 岩澤聡子, 中島宏, 角田正史, 伊藤敬一, 熊谷裕生, 高田龍平, 市田公美, 四ノ宮成祥, 松尾洋孝
- Organizer
  第39回日本ヒト細胞学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 卵泥棒の起源からシクリッドの適応放散を探る2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  第23回日本進化学会年大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Motion is essential to maintain the synovial condition and joint homeostasis.2021
- Author(s)
  Ishikura H, Saito T
- Organizer
  ANZBMS 2021 Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Association of Rifl with nuclear membrane is essential for genome-wide replication timing regulation2021
- Author(s)
  Tomohiro Iguchi, Sayuri Ito, Naoko Kakusho, Satoshi Yamazaki, Asami Oji, Rino Fukatsu, Ichiro Hiratani, Hiroyuki Sasanuma, *Hisao Masai
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ミドリイガイ全ゲノム配列の解明と足糸関連遺伝子の探索2021
- Author(s)
  井上広滋、善岡祐輝、田中裕之、金城梓、佐々三依子、植田育男、新里宙也、豊田敦、伊藤武彦
- Organizer
  令和3年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 内分泌かく乱物質暴露マウスの脳内ペプチド発現2021
- Author(s)
  細瀬摩利, 白根共太, 石橋知佳, 伊藤琴音, 田川幸樹, 松島綾美
- Organizer
  第58回ペプチド討論会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム2021
- Author(s)
  畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人
- Organizer
  第23回日本進化学会年大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ザゼンソウ肉穂花序におけるGS/GOGAT回路の解2021
- Author(s)
  澁谷泰我, 梅川結, 伊藤菊一
- Organizer
  第94回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 二粒系コムギとタルホコムギの間に見られる雑種不全の原因遺伝子単離に向けて2021
- Author(s)
  松岡宏樹, 吉村信一, 森崎良太, 宅見薫雄, 豊田敦, 田中裕之, 伊藤武彦, Axel Himmelbach, Nils Stein, 佐久間俊, 松岡由浩, 吉田健太郎
- Organizer
  第16回ムギ類研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] A hijack strategy of an endoparasitoid wasp on Drosophila larvae : Toward the Identification of venom components in Asobara japonica2021
- Author(s)
  Shimada, Yuko, Kamiyama, Takumi, Tani, Naoki, Mori, Hitoha, Katayama, Minami, Takemata, Hitomi, Fujii, Mitsuki, Kuwabara, Takayoshi, Seike, Kazuki, Nakamura, Akira, Niwa, Ryusuke
- Organizer
  第14回日本ショウジョウバエ研究集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genomic insights into the PPFMs phylogeny and unique features2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Nurettin Sahin, Akio Tani
- Organizer
  日本農芸化学会2021年度西日本・中四国・関西支部合同大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シロイヌナズナの葉緑体ゲノムの標的一塩基置換2021
- Author(s)
  中里一星, 奥野未来, 山本宏, 田村美子, 伊藤武彦, 鹿内利治, 髙梨秀樹, 堤伸浩, 有村慎一
- Organizer
  第11回日本光合成学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 尿酸輸送体遺伝子URAT1/SLC22A12の機能消失型変異に対する日本人集団4,993名における低尿酸血症の遺伝解析2021
- Author(s)
  中山昌喜, 河村優輔, 豊田優, 清水聖子, 川口真, 堀江美音, 青木優佳, 竹内研時, 岡田理恵子, 久保陽子, 今給黎敏彦, 岩澤聡子, 中島宏, 角田正史, 伊藤敬一, 熊谷裕生, 高田龍平, 市田公美, 四ノ宮成祥, 松尾洋孝
- Organizer
  日本人類遺伝学会第66回大会第28回日本遺伝子診療学会大会合同開催
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromatin-domains affect the clustered breakpoint formation in complex chromosomal rearrangement2021
- Author(s)
  Hidehito Inagaki, Takema Kato, Atsushi Toyoda, Yoshio Makita, and Hiroki Kurahashi
- Organizer
  ASHG 2021 Virtual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ザゼンソウ熱産生組織におけるSBP1の機能に関する研究2021
- Author(s)
  谷本悠, 伊藤菊一
- Organizer
  第94回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 全ゲノムから迫るビクトリア湖産シクリッドHaplochromis sp. “matumbi hunter”の集団史2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本遺伝学会第93回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Motion is essential to maintain the synovial condition and joint homeostasis.2021
- Author(s)
  Ishikura H, Saito
- Organizer
  ASBMR 2021 Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Protective effect of common and rare variants of URAT1/SLC22A12 on gout2021
- Author(s)
  Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Hiroshi Ooyama, Keito Morimoto, Naohiro Uchida, Ryuichiro Shigesawa, Kenji Takeuchi, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Nariyoshi Shinomiya, Tappei Takada, Hirotaka Matsuo
- Organizer
  The 19th International Purine and Pyrimidine Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Comparative genomic analysis of the pink pigmented facultative methylotrophs (PPFMs)2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Akio Tani
- Organizer
  2021 Galaxy Community Conference (GCC2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] A key factor for parallel evolution of hypertrophied lips in East African cichlid fishes2021
- Author(s)
  Hatashima, R., Toyoda, A., Kajitani, R. Itoh, T. and Nikaido, M.
- Organizer
  The 2nd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genomics and physiology of novel Nitrobacter strain adapted to an acidic soil environment of heavily fertilized tea field2021
- Author(s)
  Yu Takahashi, Kento Ishii, Hirotsugu Fujitani, Toshikazu Suenaga, Akihiko Terada, Yuji Sekiguchi, Kanako Tago, Masahito Hayatsu, Yuhei Hirono, Satoshi Tsuneda
- Organizer
  7th International Conference on Nitrification
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Characterization of rhizoviticin, a phage tail-like particle, as a determinant of biocontrol activity of Rhizobium vitis VAR03-1 on crown gall disease of grapevine.2021
- Author(s)
  Tsuchida, N., Ishii, T., Watanabe, M., Saito, K., Bao, J., Sato, M., Toyooka, K., Ishihama, N., Shirasu, K., Toyoda, A., Matsubara, T., Matsui, H., Yamamoto, M., Ichinose, Y., Toyoda, K., Kawaguchi, A., Noutoshi, Y.
- Organizer
  Plant Microbe Research Network (PMRN)第1回オンラインシンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シロイヌナズナの葉緑体ゲノムの標的一塩基置換2021
- Author(s)
  中里一星, 奥野未来, 田村美子, 伊藤武彦, 髙梨秀樹, 堤伸浩, 有村慎一
- Organizer
  日本ゲノム編集学会第6回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ザゼンソウの恒温性に関わる分子メカニズム2021
- Author(s)
  江刺家勇輝, 梅川結, 伊藤菊一
- Organizer
  第94回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Evolutionary history of egg hunting cichlids in Lake Victoria2021
- Author(s)
  Imamoto, M., Nakamura, H., Aibara, M., Ito, Takehiko. and Nikaido, M.
- Organizer
  The 2nd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 宿主ショウジョウバエの発生を操作する内部寄生蜂Asobara japoniraの毒の同定を目指して2021
- Author(s)
  島田裕子, 上山拓己, 森一葉, 藤井美月, 清家和樹, 片山南美, 竹股ひとみ, 谷直紀, 中村輝, 田中裕之, 豊田敦, 伊藤武彦, 丹羽隆介
- Organizer
  第67回トキシンシンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 精子完成プロセスは胚性ゲノム活性化時のトランスクリプトームに影響する2021
- Author(s)
  坂本瑞季, 伊藤大裕, 井上怜, 楊力, 菊池康之, 多田羅麻由, 若山清香, Jafar SHARIF, 坂下陽彦, 前澤創, 行川賢, 幸田尚, 若山照彦, 大我政敏
- Organizer
  第114回日本繁殖生物学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Mechanisms of membrane association of Rif1 and its role in replication timing regulation2021
- Author(s)
  Tomohiro Iguchi, Sayuri Ito, Naoko Kokusho, Yutaka Kanoh, Kaho, Takasawa, Kenji Moriyama, Hiroyuki Sasanuma, *Hisao Masai.
- Organizer
  Cold Spring Harbor Laboratory Meeting EUKARYOTIC DNA REPLICATION & GENOME MAINTENANCE
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Experience-dependent development of interneuron in juvenile brain requires cohesin-loader Nipb12021
- Author(s)
  Sakai, A., Nakato, R., Oba, GM., Peters. H., Shirahige, K., Sugiyama, S.
- Organizer
  第44回日本神経科学大会/第1回CJK国際会議
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 植物オルガネラゲノムの標的一塩基置換2021
- Author(s)
  中里一星, 奥野未来, 肥塚千恵, 常富紀子, 田村美子, 伊藤武彦, 肥塚信也, 髙梨秀樹, 堤伸浩, 有村慎一
- Organizer
  日本育種学会第140回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Substantial gout protective effect by common and rare variants of URAT1/SLC22A12 gene2021
- Author(s)
  Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Hiroshi Ooyama, Keito Morimoto, Naohiro Uchida, Ryuichiro Shigesawa, Kenji Takeuchi, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Nariyoshi Shinomiya, Tappei Takada, and Hirotaka Matsuo
- Organizer
  23th APLAR (Asia-Pacific League of Associations for Rheumatology) Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム2021
- Author(s)
  畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人
- Organizer
  The 2nd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] PTTH細胞が脱皮タイミングを制御する神経機構の解析2021
- Author(s)
  叶田貴之、伊藤瑤子、岩見雅史、木矢星歌、木矢剛智
- Organizer
  日本蚕糸学会第91回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] H3K27脱メチル化酵素阻害薬GSKJ4の腎線維化に対する影響2021
- Author(s)
  佐藤大, 三村維真理, 山崎智貴, 伊藤理加, 南学正臣
- Organizer
  第64回日本腎臓学会学術総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 内部寄生蜂Asobara japonicaの寄生成立を司る毒成分の同定に向けたマルチオミクス解析2021
- Author(s)
  上山拓己, 島田裕子, 田中裕之, 豊田敦, 伊藤武彦, 丹羽隆介
- Organizer
  第92回日本動物学会オンライン米子大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シロイヌナズナの葉緑体ゲノムの標的一塩基置換2021
- Author(s)
  中里一星, 奥野未来, 田村美子, 伊藤武彦, 髙梨秀樹, 堤伸浩, 有村慎一
- Organizer
  第38回日本植物バイオテクノロジー学会(つくば)大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 発熱植物ザゼンソウにおけるSBP1遺伝子の発現に関する研究2020
- Author(s)
  谷本悠、梅川結、伊藤菊一
- Organizer
  第93回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シクリッドにおける唇肥大化の平行進化メカニズム2020
- Author(s)
  畑島諒、豊田敦、梶谷嶺、伊藤武彦、二階堂雅人
- Organizer
  日本動物学会第91回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明2020
- Author(s)
  中村遥奈、畑島諒、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] The splicing mechanism that secures large exons encoding intrinsic disordered regions of transcription factors2020
- Author(s)
  Toshihiko Kawachi Akio Masuda, Jun-ichi Takeda, Mikako Ito, Tomonari Hamaguchi, Kinji Ohno
- Organizer
  Experimental Biology 2020 Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Update of Platanus-allee, a de novo haplotype assembler, and its application to the organisms with highly divergent haplotypes2020
- Author(s)
  Rei Kajitani, Miki Okuno, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh
- Organizer
  Plant & animal genome conference XXVIII
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Translatome profiling of methionine biosynthesis regulation in plants2020
- Author(s)
  Naoyuki Sotta, Miku Fujita, Seidai Takamatsu, Hitoshi Onouchi, Yukako Chiba, Toru Fujiwara, Satoshi Naito and Yui Yamashita
- Organizer
  TRANSLATIONAL CONTROL
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ホウレンソウ育種の効率化に向けた Pseudomoleculeの構築2020
- Author(s)
  平川英樹、豊田敦、伊藤武彦、鈴木穣、永野惇、杉山優、小野寺康之
- Organizer
  日本育種学会第138回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッドHaplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Intestinal microbiota in heart failure2020
- Author(s)
  Tomoya Yamashita, Tokiko Tabata, Takuo Emoto, Tomohiro Hayashi, Hikaru Watanabe, Tomoya Takahashi, Naofumi Yoshida, Yoshihiro Saito, Takuji Yamada, Ken-ichi Hirata
- Organizer
  第84回日本循環器学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Identification of vitamin K binding protein by magnetic beads labeled derivative to search a novel activity2020
- Author(s)
  Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
- Organizer
  ACS Fall 2020 Virtual Meeting & Expo
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Characteristics of Mosaic Neurofibromatosis type 2 Revealed by Deep Sequence for Multiple Tissue DNA2020
- Author(s)
  Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
- Organizer
  2020 European NF Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Comprehensive detection of insertion sequences in bacterial genomes2020
- Author(s)
  服部淳、吉村大、谷口愛樹、林哲也、伊藤武彦
- Organizer
  第93回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MeCP2 Levels Regulate Heterochromatin Structure in vivo2020
- Author(s)
  Aya Ito-Ishida
- Organizer
  第43回日本神経科学大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Whole-genome sequencing and comparative analysis of Emu provides insights into sex chromosome evolution of the palaeognathae clade2020
- Author(s)
  7.Miki Okuno, Rei Kajitani, Hiroyuki Tanaka, Shuhei Mizushima, Asato Kuroiwa, Takehiko Itoh
- Organizer
  Plant and Animal Genome XXVIII Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03206
[Presentation] ビワがんしゅ病抵抗性遺伝子(pse-c)のファインマッピング2020
- Author(s)
  福田伸二・文園千佳子・川口揚豊・松隈公孝・永野幸生・坂口龍之介・伊藤武彦・奥野未来・豊田敦
- Organizer
  日本植物病理学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Evolutional diversity of CENP-A essential motif and its binding mode to HJURP2020
- Author(s)
  Tetsuya Hori, Jinghui Cao, Yasuhiro Arimura, Kohei Nishimura, Mariko Ariyoshi, Atsushi Toyoda, Sadahiko Misu, Kazuho Ikeo, Hitoshi Kurumizaka, Tatsuo Fukagawa
- Organizer
  第43回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] genome Assembly and Characterization of Medicinal Plant Sophora Flavescens2020
- Author(s)
  Amit Rai, Yohei Shimizu, Hideki Hirakawa, Mami Yamazaki, Kazuki Saito
- Organizer
  Plant and Animal Genome Conference XXVIII ; San Diego, USA
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Biochemical analysis of interaction between CENP-A/H4 and HJURP2020
- Author(s)
  Jinghui Cao, Yasuhiro Arimura, Mariko Ariyoshi, Hitoshi Kurumizaka, Tetsuya Hori, Tatsuo Fukagawa
- Organizer
  第43回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update2020
- Author(s)
  Rei Kajitani, Miki Okuno, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh
- Organizer
  Plant and Animal Genome XXVIII Conference
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明2020
- Author(s)
  中村遥奈、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本遺伝学会第92回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] アゲハチョウ属5種の比較ゲノム解析2020
- Author(s)
  山部貴央，小林史弥，梶谷嶺，伊藤武彦
- Organizer
  日本動物学会関東支部第72回大会
- Data Source
  KAKENHI-PROJECT-19H03206
[Presentation] Analysis of gap regions in 22q11 by using long read sequencing technology2020
- Author(s)
  Hidehito Inagaki, Takema Kato, Atsushi Toyoda, Yoshio Makita, Hiroki Kurahashi
- Organizer
  日本人類遺伝学会第65回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 新規ホウレンソウ pseudomolecule を用いた重要育種形質のQTL解析2020
- Author(s)
  小野寺康之、杉山優、豊田敦、伊藤武彦、鈴木穣、永野惇、平川英樹
- Organizer
  日本育種学会第138回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] IDENTIFICATION OF THE TISSUE-SPECIFIC VITAMIN K BINDING PROTEIN BY USING MAGNETIC BEADS2020
- Author(s)
  Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
- Organizer
  SEATUC2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Role of cohesin loader in experience-dependent development of interneuron in juvenile brain2020
- Author(s)
  Sakai, A., Nakato, R., Peters. H., Shirahige, K., Sugiyama, S.
- Organizer
  第43回日本神経科学大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Whole-genome sequencing and comparative analysis of emu provides insights into sex chromosome evolution of the Palaeognathae clade2020
- Author(s)
  Miki Okuno, Rei Kajitani, Hiroyuki Tanaka, Shuhei Mizushima, Asato Kuroiwa, Takehiko Itoh
- Organizer
  Plant & animal genome conference XXVIII
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Runx2 defines the osteoblast chromatin landscape in skeletal development2020
- Author(s)
  Hironori Hojo, Taku Saito, Shoko Onodera, Toshifumi Azuma, Ung-il Chung, Masahide Seki, Yutaka Suzuki, Andrew P. McMahon, Shinsuke Ohba
- Organizer
  American Society for Bone and Mineral Research
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Interaction between gut microbial function and host metabolism in heart failure2019
- Author(s)
  Tokiko Tabata, Tomohiro Hayashi, Tomoya Yamashita, Naofumi Yoshida, Yoshihiro Saito, Yasuhiro Irino, Ryuji Toh, Ken-ichi Hirata
- Organizer
  第23回日本心不全学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] バルクシーケンスによるビワがんしゅ病抵抗性遺伝子(Pse-a)領域の推定2019
- Author(s)
  松隈公孝・石本慶一郎・稗圃直史・永野幸生・伊藤武彦・奥野未来・豊田敦・永野惇・山本俊哉・福田伸二
- Organizer
  園芸学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Transcriptional Regulation by Cohesin and its loader2019
- Author(s)
  KATSUHIKO SHIRAHIGE
- Organizer
  Chromosome dynamics 2019
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] Transcriptional Regulation by Cohesin and its loader2019
- Author(s)
  Katsuhiko Shirahige
- Organizer
  EMBO Workshop on “SMC proteins”
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] Hi-Cを用いたネオセントロメア形成に伴う染色体高次構造の変化の解析2019
- Author(s)
  佐藤柾幸，西村浩平，堀哲也，深川竜郎，伊藤武彦
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] 発熱植物ザゼンソウの無益回路に関する研究2019
- Author(s)
  後藤広太、梅川結、伊藤菊一
- Organizer
  第92回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-Wide Kinetic Analysis of pre-mRNA Processing in C. elegans2019
- Author(s)
  Eichi Watabe and Hidehito Kuroyanagi
- Organizer
  The 24th Annual Meeting of the RNA Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 様々なゲノム解析から見えてきたゲノムの不均一な多様性とその意義2019
- Author(s)
  伊藤武彦
- Organizer
  第71回日本細胞生物学会大会
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] ドラフトゲノムに対応した遺伝子構造アノテーション自動構築パイプラインの開発2019
- Author(s)
  Fumiya Kobayashi, Rei Kajitani, Miki Okuno, Hideaki Yuasa, Yuta Nakamura and Takehiko Itoh
- Organizer
  第8回生命医薬情報学連合大会IIBMP2019
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] ニホンウズラにおける性分化関連遺伝子および新規性決定候補遺伝子の解析2019
- Author(s)
  宮本淳太郎、奥野未来、伊藤武彦、水島秀成3、黒岩麻里
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] In vivo status of S-adenosyl-L-methionine-induced translation arrest on Arabidopsis CGS1 mRNA2019
- Author(s)
  Miku Fujita, Seidai Takamatsu, Tomoya Imamichi, Yukako Chiba, Satoshi Naito and Yui Yamashita
- Organizer
  EMBO Conference : Protein Synthesis and Translational Control
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ドラフトゲノムの不完全性が遺伝子構造アノテーションに及ぼす影響の解析2019
- Author(s)
  Yuta Nakamura, Rei Kajitani, Fumiya Kobayashi, Hideaki Yuasa and Takehiko Itoh
- Organizer
  第8回生命医薬情報学連合大会IIBMP2019
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] トゲネズミ属におけるSRY遺伝子に依存しない性決定の分子メカニズム2019
- Author(s)
  黒岩麻里，奥野未来，伊藤武彦，寺尾美穂，小川湧也，高田修治，水島秀成
- Organizer
  第42回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-19H03267
[Presentation] 発熱植物ザゼンソウにおけるtrans-resveratrol di-O-methyltransferaseに関する研究2019
- Author(s)
  谷本悠、梅川結、伊藤菊一
- Organizer
  第92回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Reverse genetics-based biochemical strudies of the ribosomal exit tunnel constriction region on eukaryotic programed ribosome stalling systems2019
- Author(s)
  Seidai Takamatsu, Yubun Ohashi, Noriyuki Onoue, Yoko Tajima, Tomoya Imamichi, Kyoko Morimoto, Shinya Yonezawa, Hitoshi Onouchi, Yui Yamashita, and Satoshi Naito
- Organizer
  EMBO Conference : Protein Synthesis and Translational Control
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Homeostasis of S-adenosylmethionine (SAM) synthetase genes in C. elegans by alternative pre-mRNA splicing through m6A modification at the 3' spice site2019
- Author(s)
  Shotaro Wani, Eichi Watabe, Yuma Ishigami, Marina Togo-Ohno, Tsutomu Suzuki, Hidehito Kuroyanagi
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 様々なゲノム解析から見えてきたゲノムの不均一な多様性とその意義2019
- Author(s)
  伊藤武彦
- Organizer
  第71回日本細胞生物学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Comprehensive detection of insertion sequences in bacterial genomes2019
- Author(s)
  Jun Hattori, Takehiko Itoh and Yoshimura Dai
- Organizer
  第8回生命医薬情報学連合大会IIBMP2019
- Data Source
  KAKENHI-PROJECT-18K19286
[Presentation] エミューゲノムの構築と比較解析による古顎類の性染色体進化の解明2019
- Author(s)
  奥野未来, 梶谷嶺, 田中裕之, 水島秀成, 黒岩麻里, 伊藤武彦
- Organizer
  第90回日本動物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-Wide Kinetic Analysis of pre-mRNA Processing Reveals Action of Splicing Regulators2019
- Author(s)
  Hidehito Kuroyanagi
- Organizer
  Polish-Japanese RNA Meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Characterization of SOP1 in posttranscriptional regulation of defense related gene expression.2019
- Author(s)
  Hagito, K., Iwamoto, N., Takagi, M., Takagi, H., Tanaka, K., Taji, T., Shinozaki, K., Terauchi, R., Shirasu, K. Ichimura, K.
- Organizer
  Phytogene Symposium XI
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] イトマキヒトデのモデル生物化に向けて～イトマキヒトデのゲノム構築～2019
- Author(s)
  伊藤武彦, 梶谷嶺, 奥野未来, 田中裕之, 豊田敦, 立花和則, 岸本健雄
- Organizer
  第90回日本動物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Prediction of hearing prognosis in NF2 related vestibular schwannoma by genetic analysis2019
- Author(s)
  Yu Teranishi, Satoru Miyawaki, Atsushi Okano, Shunsaku Takayanagi, Hirofumi Nakatomi, Nobuhito Saito
- Organizer
  NF Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Prediction of hearing prognosis in NF2 related vestibular schwannoma by genetic analysis2019
- Author(s)
  Yu Teranishi, Satoru Miyawaki, Atsushi Okano, Shunsaku Takayanagi, Hirofumi Nakatomi, Nobuhito Saito
- Organizer
  North American Skull Base Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Novel natural products biosynthetic potential of the class Ktedonobacteria2019
- Author(s)
  Zheng, Y., Saito, A., Wang C. M., Toyoda, A., Minakuchi, Y., Sakai, Y., Abe, K., Yokota, A. and Yabe, S.
- Organizer
  The 8th FEMS Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Systematic investigation of transcriptional regulations of interferon-stimulated genes.2018
- Author(s)
  Hirofumi Aso, Jumpei Ito, Yoshio Koyanagi, Kei Sato
- Organizer
  第66回日本ウイルス学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Silkworm infection model to investigate the staphylococcal virulence system2018
- Author(s)
  Chikara Kaito
- Organizer
  Workshop to Understand Staphylococcus aureus Pathogenesis
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T, Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] A novel multi-domain protein CCAR-1 regulates transcription and co-transcriptional splicing in C. elegans2018
- Author(s)
  Hidehito Kuroyanagi, Marina Togo-Ohno, Eichi Watabe, Yohei Watanabe, Yutaka Suzuki, Masatoshi Hagiwara
- Organizer
  The 23rd Annual Meeting of the RNA Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Hideki Nagasaki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  Plant and Animal Genome XXVI
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Establishment of an efficient breeding system for Ceratocystis canker resistance fig (Ficus carica)2018
- Author(s)
  Kenta Shirasawa, Hiroshi Yakushiji, Takeshige Morita, Shota Jikumaru, Kazuki Mori, Hitoshi Nogata, Chiharu Hirata, Kosuke Tashiro, Tsuyoshi Habu, Sangwan Kim, Shuichi Himeno, Satoru Kuhara, Hidetoshi Ikegami
- Organizer
  XXX. International Horticultural Congress (IHC2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析2018
- Author(s)
  岡野真佑, 奥野未来, 梶谷嶺, 黒岩麻里, 伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] On the evolutionary origin of insect wings : insights from basal insects2018
- Author(s)
  Takahiro Ohde, Taro Mito and Teruyuki Niimi
- Organizer
  The 46th Naito Conference "Mechanisms of Evolution and Biodiversity"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] オニヒトデから見つかった謎の共在菌について2018
- Author(s)
  和田直久, 湯淺英知, 梶谷嶺, 後藤恭弘, 小椋義俊, 吉村大, 豊田敦, Sen-Lin TANG, 東村幸浩, Hugh SWEATMAN, Zac FORSMAN, Omri BRONSTEIN, Gal EYAL, Nalinee THONGTHAM, 林哲也, 伊藤武彦, 安田仁奈
- Organizer
  第21回日本サンゴ礁学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ザゼンソウの熱産生組織で発現する複数のチオレドキシンレダクターゼ遺伝子2018
- Author(s)
  樋口リサ、梅川結、伊藤菊一
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Emergence and evolution of Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) from bovine commensal E. coli2018
- Author(s)
  Yoshitoshi Ogura
- Organizer
  The Second SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] インドー太平洋のオニヒトデから見つかった未知の菌のゲノム解析2018
- Author(s)
  湯淺英知, 梶谷嶺, 後藤恭宏, 和田直久, 吉村大, 小椋義俊, 林哲也, 安田仁奈, 伊藤武彦
- Organizer
  第21回日本サンゴ礁学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析2018
- Author(s)
  岡野真佑，奥野未来，梶谷嶺，黒岩麻里，伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] STAT3 : A Key Transcriptional Factor Not Only in Embryo Implantation but also in Endometrial Regeneration2018
- Author(s)
  Hirota Y, Hiraoka T, Saito-Fujita T, Osuga Y.
- Organizer
  Society for Reproductive Investigation, 65th Annual Scientific Meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Regulation of surface expression dynamics of AMPA receptors and cognitive refinement processes by Arc.2018
- Author(s)
  Okuno H, Ishii Y, Endo T, Minatohara K, Bito H.
- Organizer
  日本生理学会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] The population structure of enterohemorrhagic Escherichia coli 026 : H11 with recent and repeated stx2 acquisition in multiple lineages2018
- Author(s)
  Yoshitoshi Ogura, Kazuko Seto, Shuji Yoshino, Junko Isobe, Yoshiki Etoh, Keiko Kimata, Eriko Maeda, Denis Piérard, Masahiro Kusumoto, Masato Akiba, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques G. Mainil, and Tetsuya Hayashi
- Organizer
  10th international symposium on Shiga toxin producing Escherichia coli infections
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 10X-Linked-reads、Mate-pairを活用したメタゲノムアセンブリ手法の開発2018
- Author(s)
  梶谷嶺, 小椋義俊, 後藤恭宏, 林哲也, 伊藤武彦
- Organizer
  第12回ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第12回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ザゼンソウの熱産生組織における遺伝子発現プロファイリング2018
- Author(s)
  谷本悠、梅川結、伊藤菊一
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Regulation of Transcription by Cohesin and its loader2018
- Author(s)
  Shirahige K
- Organizer
  Principles of Chromosome Structure and Function
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] Integrative Omics approach to elucidate camptothecin biosynthesis2018
- Author(s)
  Amit Rai, Ryo Nakabayashi, Taiki Nakaya, Tetsuya Mori, Hideyuki Suzuki, Kazuki Saito and Mami Yamazaki
- Organizer
  第59回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Development of Marchantia Gene Nomenclature Database2018
- Author(s)
  Yasuhiro Tanizawa, Takako Mochizuki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第91回日本細菌学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Characterization of HIV-1 infected cells in vivo by multi-omics analysis.2018
- Author(s)
  Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Naoko Misawa, Hirofumi Aso, Shinji Nakaoka, Yorifumi Satou, Katsuyuki Shiroguchi, Yoshio Koyanagi, Kei Sato.
- Organizer
  第66回日本ウイルス学会学術集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 発熱植物ザゼンソウの肉穂花序におけるトランスクリプトーム解析2018
- Author(s)
  谷本悠, 梅川結, 伊藤菊一
- Organizer
  日本生化学会東北支部第84回例会・シンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 網羅的遺伝子構造予測自動アノテーションパイプラインの開発2018
- Author(s)
  篠田恭寛, 梶谷嶺, 小林史弥, 高橋和希, 中村優太, 湯淺英知, 伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Functional Genomics on Medicinal Plants2018
- Author(s)
  Amit Rai, Kazuki Saito and Mami Yamazaki
- Organizer
  International Plant and Animal Genome XXVI, San Diego
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発2017
- Author(s)
  梶谷嶺，小椋義俊，後藤恭宏，吉村大，奥野未来，林哲也，伊藤武彦
- Organizer
  第11回日本ゲノム微生物学会年会
- Place of Presentation
  慶応義塾大学　湘南藤沢キャンパス
- Year and Date
  2017-03-02
- Data Source
  KAKENHI-PROJECT-16H04719
[Presentation] Transcriptional regulation by cohesin and its loader2017
- Author(s)
  katsuhiko Shirahige
- Organizer
  第9回NAGOYAグローバルリトリート
- Place of Presentation
  愛知健康プラザ、愛知県大府市
- Year and Date
  2017-02-10
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] 比較ゲノムによる腸管出血性大腸菌O145:H28の多様性解析2017
- Author(s)
  中村佳司、村瀬一典、伊藤武彦、Mainil Jacques、吉野修司、黒木真理子、木全恵子、磯部順子、勢戸和子、江藤良樹、前田詠里子、緒方喜久代、成松浩志、齋藤志保子、八柳潤、伊豫田淳、大西真、大岡唯祐、後藤恭宏、小椋義俊、林哲也、
- Organizer
  第90回日本細菌学会総会
- Place of Presentation
  仙台国際センター
- Data Source
  KAKENHI-PROJECT-16H05190
[Presentation] Roles of Arc/arg3.1 on surface expression dynamics of AMPA receptors during structural plasticity and on cognitive refinement processes.2017
- Author(s)
  Okuno H, Ishii Y, Endo T, Uehara M, Suzuki Y, Minatohara K, Araki A, Abe M, Imayoshi I, Kakeyama M, Sakimura K, Bito H.
- Organizer
  Society for Neuroscience
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Analysis of human chromosome organization mediated by cohesin complex2017
- Author(s)
  Toyonori Sakata, Katsuhiko Shirahige
- Organizer
  Genetic Networks (GN) Workshop
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] PacBioおよびIlluminaシークエンサを用いた新規アセンブル手法の開発2017
- Author(s)
  番匠康雄，梶谷嶺，伊藤武彦
- Organizer
  第11回日本ゲノム微生物学会年会
- Place of Presentation
  慶応義塾大学　湘南藤沢キャンパス
- Year and Date
  2017-03-02
- Data Source
  KAKENHI-PROJECT-16H04719
[Presentation] 4C-Seqを用いたネオセントロメア形成に伴う染色体高次構造変化の解析2017
- Author(s)
  古宮正隆，西村浩平，堀哲也，深川竜郎，伊藤武彦
- Organizer
  第40回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] Hi-Cを用いた二倍体出芽酵母の染色体構造解析2017
- Author(s)
  角崎太郎，石毛大輔，岩崎博史，伊藤武彦
- Organizer
  第40回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] Molecular mechanism and evolution of female-limited and polymorphic Batesain mimicry in Papilio polytes.2017
- Author(s)
  Fujiwara, H., Nishikawa, H., Iijima, T., Kajitani, R. and Ito, T.
- Organizer
  19th Annual Meeting of the Society of Evolutionary Studiies
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ショートリードを用いたりピート配列のde novo検出法の開発2017
- Author(s)
  田中良樹, 梶谷嶺, 豊田敦, 後藤友二, 久保田宗一郎, 伊藤武彦
- Organizer
  日本動物学会第88回富山大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] イトマキヒトデの卵成熟前後におけるmRNA3'末端の網羅的解析2017
- Author(s)
  野川駿, 岩永紗弥, 梶谷嶺, 越智洋絵, 鈴木穣, 千葉和義, 伊藤武彦
- Organizer
  日本動物学会第88回富山大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Activated IL6-STAT3 pathway in adenomyosis.2017
- Author(s)
  Hirota Y, Hiraoka T, Saito-Fujita T, Harada M, Fujii T, Osuga Y.
- Organizer
  13th World Congress of Endometriosis
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region.2017
- Author(s)
  梶谷嶺，吉村大，奥野未来，豊田敦，伊藤武彦
- Organizer
  第6回生命医薬情報学連合大会（IIBMP2017）
- Data Source
  KAKENHI-PROJECT-16H04719
[Presentation] What is the key developmental change for insect wing evolution?2017
- Author(s)
  Ohde, T., Mito, T. and Niimi, T.
- Organizer
  2nd Biennial Meeting of Pan-American Society for Evolutionary Developmental Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region.2017
- Author(s)
  梶谷嶺，吉村大，奥野未来，豊田敦，伊藤武彦
- Organizer
  第6回生命医薬情報学連合大会（IIBMP2017）
- Data Source
  KAKENHI-PROJECT-16K14641
[Presentation] 超高精度分子疫学解析で迫る病原菌の動態,2017
- Author(s)
  後藤恭宏、片平雄之、吉村大、伊藤武彦、小椋義俊、林哲也,
- Organizer
  第90回日本細菌学会総会
- Place of Presentation
  仙台国際センター
- Data Source
  KAKENHI-PROJECT-16H05190
[Presentation] Examining genetic divergence of closely related Crown-of-Thorns starfish species between Indian and Pacific Ocean using whole genome data.2017
- Author(s)
  Hideaki Yuasa, Rei Kajitani, Kazuki Takahashi, Dai Yoshimura, Takehiko Itoh, Yoshitoshi Ogura, Tetuya Hayashi, Zac Forsman, Nalinee Thongtham, Niphon Phongsuwan, Coralie Taquet, Marc Taquet, Nina Yasuda
- Organizer
  The Third Asia Marine Biology Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-wide kinetic analysis of pre-mRNA processing in living animals2017
- Author(s)
  Eichi Watabe, Hidehito Kuroyanagi
- Organizer
  CSHL Meetings/40 Years of mRNA Splicing : From Discovery to Therapeutics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ブドウ球菌属におけるライブラリ調製キットNextera XTによるGC含有量と相関したシーケンスバイアス2017
- Author(s)
  佐藤光彦、小椋義俊、中村佳司、西田留梨子、後藤恭宏、久恒順三，菅井基行，伊藤武彦，林哲也
- Organizer
  第１１回日本ゲノム微生物学会年会
- Place of Presentation
  慶応義塾大学湘南藤沢キャンパス
- Data Source
  KAKENHI-PROJECT-16H05190
[Presentation] ライブラリ調製キットNextera XTによるシーケンスバイアスと細菌のGC含量の関係2017
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  NGS現場の会第5回研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Organization of 3D genome structure mediated by cohesin and CTCF2017
- Author(s)
  Toyonori Sakata, Katsuhiko Shirahige
- Organizer
  EMBO Workshop “Evolution in the Time of Genome Architecture”
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] Transcriptional regulation by cohesin and its loader2016
- Author(s)
  katsuhiko Shirahige
- Organizer
  CdLS symposium
- Place of Presentation
  アメリカ、フロリダ
- Year and Date
  2016-09-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] 腸管出血大腸菌O145:H28の比較ゲノム解析2016
- Author(s)
  中村佳司、村瀬一典、西田留梨子、伊藤武彦、Mainil Jaqyes,、吉村修司、磯部順子、勢戸和子、江藤良樹、富永潔、緒方喜久代、斉藤志保子、八柳潤、黒木真理子、木全恵子、前田詠里子，亀山光博，成松浩志、矢端順子、伊豫田淳、大西真、大岡唯祐、後藤恭宏、小椋義俊、林哲也
- Organizer
  第69回日本細菌学会九州支部総会
- Place of Presentation
  宮崎市民プラザ
- Year and Date
  2016-09-01
- Data Source
  KAKENHI-PROJECT-16H05190
[Presentation] 全ゲノムシークエンスデータに基づいた高精度配列構造変異検出プロトコルの構築2016
- Author(s)
  西村浩平，堀哲也，古宮正隆，伊藤武彦，深川竜郎
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PLANNED-15H05979
[Presentation] How cohesin and its loader regulate transcription? Clues from newly identi ed disease andin vitro reconstitution system2016
- Author(s)
  katsuhiko Shirahige
- Organizer
  トロント大学のセミナー
- Place of Presentation
  カナダ、トロント
- Invited
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] MiFish, a set of universal primers for metabarcoding environmental DNA from fishes: Detection of >230 species from aquarium tanks and coral reefs in the subtropical western North Pacific.2015
- Author(s)
  Masaki Miya, Yukuto Sato, Tsukasa Fukunaga, Tetsuya Sado, Jan Yde Poulsen, Keiichi Sato, Toshifumi Minamoto, Satoshi Yamamoto, Hiroki Yamanaka, Hitoshi Araki, Michio Kondoh, and Wataru Iwasaki.
- Organizer
  6th International Barcode of Life Conference
- Place of Presentation
  University of Guelph, Canada
- Year and Date
  2015-08-19
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Transcriptional regulation by Cohesin and its loader2015
- Author(s)
  Katsuhiko Shirahige
- Organizer
  International conference of the Korean Society for molecular and cellular biology
- Place of Presentation
  Soul、Korea
- Year and Date
  2015-09-22
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] The crude Lysate system to analyze transcriptional regulation by cohesin loader2015
- Author(s)
  Katsuhiko Shirahige
- Organizer
  CSH Mechanisms of Eukaryotic Transcription
- Place of Presentation
  NY, USA
- Year and Date
  2015-08-25
- Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05970
[Presentation] ヒラアオノリ配偶子の一過的形質転換系による葉緑体とミトコンドリアの可視化とその動態2014
- Author(s)
  鈴木亮吾，伊藤寛，尾関海，余哲，山崎誠和，豊田敦，桑野和可，河野重行
- Organizer
  日本藻類学会第38回大会
- Place of Presentation
  東邦大学理学部
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 重症度の差異を認めたレット症候群の一卵性双生児のゲノム・エピゲノム比較解析2013
- Author(s)
  久保田健夫、三宅邦夫、水口洋平、伊藤雅之、後藤雄一、豊田敦
- Organizer
  日本人類遺伝学会第58回大会
- Place of Presentation
  宮城県仙台市　江陽グランドホテル
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Mutations of COQ2 in Familial and Sporadic Multiple System Atrophy2013
- Author(s)
  Mitsui J, Matsukawa T, Ishiura H, Fukuda Y, Ichikawa Y, Date H, Ahsan B, Nakahara Y, Momose Y, Takahashi Y, Goto J, Yamamoto Y, Shirahige K, Takahashi H, Onodera O, Nishizawa M, Kondo T, Murayama S,
- Organizer
  American Society of Human Genetics 63rd Annual Meeting
- Place of Presentation
  Boston, USA
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Functional interactions between Rad51 recombinase and its activator Swi5-Sfr1 complex in fission yeast2013
- Author(s)
  Ito K, Tsutsui Y, and Iwasaki H
- Organizer
  Pombe 2013 7th International Fission Yeast Meeting
- Place of Presentation
  London, UK
- Invited
- Data Source
  KAKENHI-ORGANIZER-22125001
[Presentation] Transcriptome sequencing of S.venezuelensis, an animal parasitic nematode2011
- Author(s)
  E.Nagayasu, Y.Ogura, T.Ito, A.Yoshida, G.Chakraborty, T.Hayashi, H.Maruyama
- Organizer
  International union of microbiological societies 2011 congress
- Place of Presentation
  Sapporo, Hokkaido, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Genome and transcriptome sequencing of Strongyloides venezuelensis, an animal parasitic nematode2011
- Author(s)
  E.Nagayasu, Y.Ogura, T.Ito, A.Yoshida, T.Hayashi, H.Maruyama
- Organizer
  45th Annual Japan-US Joint Conference on Parasitic Diseases
- Place of Presentation
  National Institute of Infectious Diseases Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Comprehensive analysis of small non-coding RNAs in medaka transcriptome by deep RNA-seq approach2011
- Author(s)
  Abe, M., Hase, S., Ogawa, M., Okada, Y., Sato, K., Saito, Y., Sakakibara, Y.
- Organizer
  RNA 2011 Sixteenth Annual Meeting of the RNA Society
- Place of Presentation
  Kyoto, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[]
[]
[]
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152. ONUMA Takeshi

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153. SHIMOJIMA Keiko

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154. MASUYA Masahiro

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# of Collaborated Products: 1 results
155. MARUYAMA Fumito

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156. NAKATOMI Hirofumi

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157. HOSOMICHI Kazuyoshi

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158. FUKUYO Masaki

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159. HIDESHI Ishii

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# of Collaborated Products: 4 results
160. YOSHIHARA Kousuke

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# of Collaborated Products: 1 results
161. SUMITOMO Tomoko

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162. NAGASAKI Keizo

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163. KURONUMA Koji

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164. HORI Tetsuya

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165. ARIYOSI Mariko

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166. MURO Shigeo

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167. UEDA Jun

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168. YONEZAWA Hideo

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169. OHKAWA Yasuyuki

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170. OSATO Naoki

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171. 齊藤祐子

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172. 村山繁雄

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173. 大河原美静

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174. TATUM Prima

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175. TATUM PrimaRoechelle

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176. 中島欽一

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177. 堀内浩

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178. 関光

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179. 岩田哲郎

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180. 西村浩平

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181. 西山智明

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182. 関本弘之

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183. 前原一満

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184. 新村芳人

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185. 村川泰裕

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186. 本郷一美

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187. 河合瞳

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188. 松本昂

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189. 水島秀成

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190. Subsomwong Phawinee

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191. 工藤洋

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192. 濱さき恒二

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193. 岡田洋平

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194. 伊藤卓治

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195. CASCO.ROBLES Martin.Miguel

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196. 中杤昌弘

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197. 奥野浩行

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198. 上村匡

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199. 碓井理夫

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200. 谷明生

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201. 和田浩則

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202. 赤田純子

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203. 石井敦士

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204. 稲葉靖子

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205. 今村公紀

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206. 宮脇哲

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207. 田中真仁

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208. 千々松良太

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209. 回渕修治

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210. 中村泰之

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211. 奥崎大介

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212. 谷口浩二

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213. 吉住朋晴

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214. 伊藤心二

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215. 伊藤優志

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216. 八尾良司

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217. 今村拓也

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218. 中川誠太郎

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219. 小池正人

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220. 高田龍平

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221. 豊田優

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222. 市田公美

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223. 西田宏記

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224. 水谷紗弥佳

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225. 伊東潤平

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226. 鈴木留美子

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227. 小山時隆

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228. 山本俊至

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229. 塩見美喜子

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230. 荒木弘之

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231. 有村慎一

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232. 鈴木絢子

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233. 古関明彦

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234. 谷時雄

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235. 清水良子

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236. 石本崇胤

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237. 山岡尚平

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238. 鬼塚陽子

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239. 後藤典子

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240. 伊藤菊一

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241. 黒柳秀人

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242. 斎藤延人

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243. 高柳俊作

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244. 本郷博貴

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245. 増田章男

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246. 大野欽司

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247. 安田忠仁

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248. 千場隆

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249. 嶋田美穂

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250. 鯨井智也

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251. 岩切淳一

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252. 齊藤知子

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253. 廣田泰

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254. 正井久雄

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255. 原知明

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256. 間野達雄

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257. 内田智久

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258. 氣駕恒太朗

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259. 榎本隆之

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260. 井内仁志

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261. 山岸誠

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262. 柴田弘紀

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263. 北條宏徳

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264. 大場雄介

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265. 鈴木秀文

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266. 山口雅也

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267. 藤田侑里香

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268. 吉田天士

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269. 緒方博之

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270. 塩田星児

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271. 矢野健太郎

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272. 江口英利

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273. 今野雅允

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274. 津川裕司

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275. 権藤洋一

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276. 橋本均

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277. 原田哲仁

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278. 鈴木雅美

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279. 石濱伸明

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280. 宮腰昌利

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281. 安田仁奈

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282. スティアマルガデフィン

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283. 高橋弘毅

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284. 清水元樹

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285. 佐々木猛智

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286. 佐藤晋

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287. 佐藤篤靖

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288. 西順一郎

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289. 藺牟田直子

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290. 杉田亮平

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291. 神田輝

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292. 高橋建造

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293. 内海大介

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294. 本庄雅則

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295. 高橋純一

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296. 三森功士

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297. 井上広滋

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298. 白須賢

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299. 斎藤通紀

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300. 殿城亜矢子

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301. 伊川正人

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302. 三浦郁夫

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303. 内藤真理子

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304. 庄子幹郎

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305. 長安英治

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306. 酒井寿郎

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307. 中村亮一

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308. 稲葉丈人

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309. 板東哲哉

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310. 笹沼博之

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Ito Takehiko 伊藤 武彦

ITOH Takehiko 伊藤 武彦

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Pore-Cデータを活用した多倍体ゲノムアセンブル手法の開発Principal Investigator

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Development of genome assembler for long-reads using de bruign graph algorithmPrincipal Investigator

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Development of a k-mer-based GWAS method for metagenomic analysisPrincipal Investigator

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Development of an algorithm for determining the location of homologous recombination sites from NGS data and analysis of the relationship with genetic informationPrincipal Investigator

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Development of a metagenomic analysis method that enables whole-genome construction from metagenome using the Hi-C methodPrincipal Investigator

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Development of haplotype phased genome assemblerPrincipal Investigator

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Ito Takehiko 伊藤武彦

ITOH Takehiko 伊藤武彦