Kasahara Masahiro 笠原雅弘

… Alternative Names

KASAHARA Masahiro 笠原雅弘

笠原雅弘カサハラマサヒロ

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Researcher Number	60376605
Other IDs
Affiliation (Current)	2025: 東京大学, 大学院新領域創成科学研究科, 准教授
Affiliation (based on the past Project Information) *help	2020 – 2024: 東京大学, 大学院新領域創成科学研究科, 准教授 2018: 東京大学, 大学院新領域創成科学研究科, 准教授 2016 – 2018: 東京大学, 大学院新領域創成科学研究科, 講師 2012 – 2015: 東京大学, 新領域創成科学研究科, 講師 2014: 東京大学, 大学院新領域創成科学研究科, 講師 … More 2009 – 2012: 東京大学, 大学院・新領域創成科学研究科, 講師 2009: 東京大学, 大学院・新領域創成科学研究科, 特任准教授 2008: 東京大学, 大学院・新領域創成科学研究科, 特任助教 2005: 東京大学, 大学院・新領域創成科学研究科, 研究拠点形成特任教員 Less
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / Medium-sized Section 62:Applied informatics and related fields / Life / Health / Medical informatics / Bioinformatics/Life informatics / Biological Sciences Except Principal Investigator Biological Sciences / Biological Sciences
Keywords	Principal Investigator アルゴリズム / ゲノム / ロングリード / ゲノムアセンブリ / 人類遺伝学 / 関連解析 / ゲノムブラウザ / ヒトゲノム / 構造多型 / アラインメント … More / パンゲノム / グラフゲノム / 長鎖DNAシークエンサー / 植物ゲノム / 反復配列 / 染色体 / 遺伝子 / Ｈｉ－Ｃ / 配列検索 / ゲノムデータベース / 配列アラインメント / ＳＳＤ / 不揮発メモリー / ハイパフォーマンス・コンピューティング / ソフトウエア開発効率化・安定化 / ゲノム解析 / ハイパフォーマンスコンピューティング / 並列分散計算 / ゲノム科学 / パイプライン / 並列計算 / コンテナ仮想化 / 再現性 / ワークフロー / 遺伝学的地図 / ショットガン法 / ゲノムアセンブラ / 計算機システム … More Except Principal Investigator ゲノム / メタゲノム / エピゲノム / リシーケンシング / RNA-seq / 次世代DNAシーケンサー / 次世代シーケンサー / バイオインフォマティクス / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / シングルセル解析 / オミックス解析 / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / 新規ゲノム配列決定 / 遺伝子発現変動 / アブラムシ / ヒメツリガネゴケ / 一塩基多 / 発現定量 / トランスクリプトーム解析 / 単分子シーケンサー / ゲノムアセンブリー / 計数比較 / 遺伝学的地図 / ゲノムアセンブリ / 遺伝子発現比較 / トランスクリプトーム / アセンブリー / 次世代DNAシーケンサ / インフォームドコンセント / GWAS / 個人ゲノム / de novo配列決定 / ChIP-seq / ソフトウエア / 疾患関連遺伝子変異 / 塩基置換 / 構造多型 / パーソナルゲノム / 異常リピート配列検出 / 構造変異 / アルゴリズム / 家系解析 / 脳疾患 / エキソーム解析 / 全ゲノム解析 / ゲノムライブラリ / ハイスループット解析 / バイオテクノロジー / 配列決定 / ライブラリ / 次世代シークエンシング / 遺伝学 / 遺伝子 / ゲノム科学 / マイクロアレイ / 染色体 / ゲノム情報 / 比較ゲノム Less

Graph Genome Analysis Incorporating Pangenome DiversityPrincipal Investigator
- Principal Investigator
  
  笠原雅弘
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  The University of Tokyo
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
Genome informatics using non-volatile memoryPrincipal Investigator
- Principal Investigator
  
  Kasahara Masahiro
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  The University of Tokyo
Method for sequencing and analyzing huge plant genomesPrincipal Investigator
- Principal Investigator
  
  Kasahara Masahiro
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  The University of Tokyo
A system for accelerating large-scale genome analysisPrincipal Investigator
- Principal Investigator
  
  Kasahara Masahiro
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Exploring informatics for brain diseases based on personal genomics
- Principal Investigator
  
  MORISHITA Shinichi
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Development of algorithms for genome sequencing using next-generationDNA sequencersPrincipal Investigator
- Principal Investigator
  
  KASAHARA Masahiro
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
Establishment of genome analyses methods for non-model organisms
- Principal Investigator
  
  Nishiyama Tomoaki
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kanazawa University
ポリモルフィズムに強い全ゲノムショットガン配列アセンブラの開発Principal Investigator
- Principal Investigator
  
  笠原雅弘
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity : Support Groups
- Principal Investigator
  
  FUJIYAMA Asao
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Informatics

[Book] 次世代シーケンサー活用術「１分子シーケンサーを用いた非モデル生物の de novo ゲノム解読」2015
- Author(s)
  柴田朋子、笠原雅弘、重信秀治、西山智明、長谷部光泰
- Total Pages
  212
- Publisher
  化学同人
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Decreased Proteasomal Function Exacerbates Endoplasmic Reticulum Stress-Induced Chronic Inflammation in Obese Adipose Tissue2024
- Author(s)
  Nakagawa S, Fukui-Miyazaki A, Yoshida T, Ishii Y, Murata E, Taniguchi K, Ishizu A, Kasahara M, Tomaru U
- Journal Title
  
  The American Journal of Pathology
  
  Volume: - Issue: 6 Pages: 1033-1046
- DOI
  10.1016/j.ajpath.2024.02.007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H03758, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K27669
[Journal Article] Sperm-specific histone H1 in highly condensed sperm nucleus of Sargassum horneri2024
- Author(s)
  Takeuchi Y, Sato S, Nagasato C, Motomura T, Okuda S, Kasahara M, Takahashi F, Yoshikawa S
- Journal Title
  
  Sci Rep
  
  Volume: 14 Issue: 1 Pages: 3387-3387
- DOI
  10.1038/s41598-024-53729-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06692, KAKENHI-PLANNED-21H05309, KAKENHI-PROJECT-22H04925
[Journal Article] A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium2023
- Author(s)
  Sekimoto, H., Komiya, A., Tsuyuki, N., Kawai, J., Kanda, N., Ootsuki, R., Suzuki, Y., Toyoda, A., Fujiyama, A., Kasahara, M., Abe, J., Tsuchikane, Y., Nishiyama, T.
- Journal Title
  
  New Phytologist
  
  Volume: 237 Issue: 5 Pages: 1636-1651
- DOI
  10.1111/nph.18662
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21451, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02549, KAKENHI-PROJECT-19K06827, KAKENHI-PROJECT-18K19365, KAKENHI-PROJECT-19K22448, KAKENHI-PLANNED-22H05177
[Journal Article] Further notice of omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation2023
- Author(s)
  Yukari Tanaka、Riu Yamashita、Junko Kawashima、Hiroshi Mori、Ken Kurokawa、Shinji Fukuda、Yasuhiro Gotoh、Keiji Nakamura、Tetsuya Hayashi、Yoshiyuki Kasahara、Yukuto Sato、Shin Fukudo
- Journal Title
  
  Journal of Gastroenterology
  
  Volume: 58 Issue: 4 Pages: 427-428
- DOI
  10.1007/s00535-022-01951-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Somatic mutation rates scale with time not growth rate in long-lived tropical trees2023
- Author(s)
  Akiko Satake、Ryosuke Imai、Takeshi Fujino、Sou Tomimoto、Kayoko Ohta、Mohammad Na’iem、Sapto Indrioko、 Widiyatno、Susilo Purnomo、Almudena Molla-Morales、Viktoria Nizhynska、Naoki Tani、Yoshihisa Suyama、Eriko Sasaki、Masahiro Kasahara
- Journal Title
  
  eLife
  
  Volume: －
- DOI
  10.7554/elife.88456.2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] NKG2D Ligand Expression Induced by Oxidative Stress Mitigates Cutaneous Ischemia-Reperfusion Injury2023
- Author(s)
  Keishi Makita、Noriyuki Otsuka、Utano Tomaru、Koji Taniguchi、Masanori Kasahara
- Journal Title
  
  Journal of Histochemistry & Cytochemistry
  
  Volume: 71 Issue: 2 Pages: 61-72
- DOI
  10.1369/00221554221147582
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-15K21775, KAKENHI-PROJECT-20H03758, KAKENHI-PROJECT-23K24099
[Journal Article] The molecular clock in long-lived tropical trees is independent of growth2023
- Author(s)
  Satake, A., Imai, R., Fujino, T., Tomimoto, S., Ohta K., Na’iem, M., Indrioko, S., Widiyatno, Purnomo, S., Molla Morales, A., Nizhynska, V., Tani, N., Suyama, Y., Sasaki, E., Kasahara, M.
- Journal Title
  
  eLife
  
  Volume: 12
- DOI
  10.7554/elife.88456.1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23KJ1722, KAKENHI-PROJECT-22H04925
[Journal Article] Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation2022
- Author(s)
  Yukari Tanaka、Riu Yamashita、Junko Kawashima、Hiroshi Mori、Ken Kurokawa、Shinji Fukuda、Yasuhiro Gotoh、Keiji Nakamura、Tetsuya Hayashi、Yoshiyuki Kasahara、Yukuto Sato、Shin Fukudo
- Journal Title
  
  Journal of Gastroenterology
  
  Volume: 57 Issue: 10 Pages: 748-760
- DOI
  10.1007/s00535-022-01888-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] LPMX : a pure rootless composable container system2022
- Author(s)
  Xu Yang, Masahiro Kasahara
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 23 Issue: 1 Pages: 112-112
- DOI
  10.1186/s12859-022-04649-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Inflammation-Induced Tumorigenesis and Metastasis2021
- Author(s)
  Sana Hibino, Tetsuro Kawazoe, Hidenori Kasahara, Shinji Itoh, Takatsugu Ishimoto, Mamiko Sakata-Yanagimoto and Koji Taniguchi
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 11 Pages: 5421-5421
- DOI
  10.3390/ijms22115421
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J00502, KAKENHI-PROJECT-15K21775, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279
[Journal Article] Long-read sequencing for non-small-cell lung cancer genomes2020
- Author(s)
  Sakamoto Y, Xu L, Seki M, Yokoyama TT, Kasahara M, Kashima Y, Ohashi A, Shimada Y, Motoi N, Tsuchihara K, Kobayashi SS, Kohno T, Shiraishi Y, Suzuki A, Suzuki Y.
- Journal Title
  
  Genome Res
  
  Volume: 30 Issue: 9 Pages: 1243-57
- DOI
  10.1101/gr.261941.120
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K07036, KAKENHI-PROJECT-20H00545, KAKENHI-PROJECT-16K21746, KAKENHI-PROJECT-16H06279
[Journal Article] Long read sequencing for non-small cell lung cancer genomes2020
- Author(s)
  Yoshitaka Sakamoto, Liu Xu, Masahide Seki, Toshiyuki T. Yokoyama, Masahiro Kasahara, Yukie Kashima, Akihiro Ohashi, Yoko Shimada, Noriko Motoi, Katsuya Tsuchihara, Susumu S. Kobayashi, Takashi Kohno, Yuichi Shiraishi, Ayako Suzuki, Yutaka Suzuki
- Journal Title
  
  Genome Research
- Description
  未定 in press
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] MoMI-G: modular multi-scale integrated genome graph browser2019
- Author(s)
  Toshiyuki T. Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 20 Issue: 1 Pages: 548-548
- DOI
  10.1186/s12859-019-3145-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J21608, KAKENHI-PROJECT-16H06279
[Journal Article] Visualization tools for human structural variations identified by whole-genome sequencing2019
- Author(s)
  Toshiyuki T. Yokoyama, Masahiro Kasahara
- Journal Title
  
  Journal of Human Genetics
  
  Volume: 65 Issue: 1 Pages: 49-60
- DOI
  10.1038/s10038-019-0687-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J21608, KAKENHI-PROJECT-16H06279
[Journal Article] Introducing difference recurrence relations for faster semi-global alignment of long sequences2018
- Author(s)
  Hajime Suzuki and Masahiro Kasahara.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 19 Issue: Suppl 1 Pages: 45-45
- DOI
  10.1186/s12859-018-2014-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] ナノポアリードのアライメントツール2018
- Author(s)
  鈴木創, 笠原雅弘
- Journal Title
  
  実験医学
  
  Volume: 36 Issue: 1
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.2014
- Author(s)
  Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
- Journal Title
  
  BMC Genomics
  
  Volume: 15 Issue: 1 Pages: 699-699
- DOI
  10.1186/1471-2164-15-699
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25670271, KAKENHI-PROJECT-26870328, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128008
[Journal Article] Segmental duplications in the silkworm genome.2013
- Author(s)
  Zhao Q, Zhu Z, Kasahara M, Morishita S, Zhang Z.
- Journal Title
  
  BMC Genomics
  
  Volume: 14(1) Pages: 521-521
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly.2010
- Author(s)
  Kuroshu RM, Watanabe J, Sugano S, Morishita S, Suzuki Y, Kasahara M.
- Journal Title
  
  PLoS One
  
  Volume: 5(5)
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22129008
[Journal Article] The medaka draft genome and insights into vertebrate genome evolution2007
- Author(s)
  Kasahara M, et. al. including Fujiyama, To yoda and Kuroki
- Journal Title
  
  Nature 447
  
  Pages: 714-719
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17018030
[Presentation] For the development of a PCR primer design pipeline for detection of contamination in foods2023
- Author(s)
  Yoritaka Harazono、Keisuke Soga、Masahiro Kasahara
- Organizer
  Genome Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] スギ（Cryptomeria japonica D. Don）の全ゲノム配列の決定2023
- Author(s)
  藤野　健・山口勝司・横山稔之・濵中俊哉・原薗陛正・鎌田寛彬・小林航・伊原徳子・内山憲太郎・松本麻子・伊津野彩子・津村義彦・豊田敦・重信秀治・森口喜成・上野真義・笠原雅弘
- Organizer
  2023年度日本森林学会
- Data Source
  KAKENHI-PROJECT-20H03239
[Presentation] 動物死体における甲虫相および微生物叢の遷移パターンはウジを排除すると変わるのか?2022
- Author(s)
  橋詰茜, 松島義治, 山中康如, 幸田良介, 笠原康裕, 大館智志, 中島啓裕
- Organizer
  第69回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 長寿命植物Shorea laevisにおける幹細胞突然変異速度と分布について2022
- Author(s)
  今井亮介、佐々木江理子、藤野健、笠原雅弘、谷尚樹、陶山佳久、佐竹暁子
- Organizer
  日本進化学会第24回沼津大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] メダカ地域集団を用いたアルツハイマー病関連遺伝子と新奇性追及との関連性の検証2022
- Author(s)
  木村文昭、笠原麗美、太田博樹、小川元之、竹内秀明、勝村啓史
- Organizer
  第76回日本人類学会大会・第38回日本霊長類学会大会連合大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 新奇性追求の遺伝基盤とその進化的意義の解明に向けた取り組み2022
- Author(s)
  木村文昭、笠原麗美、太田博樹、小川元之、竹内秀明、勝村啓史
- Organizer
  日本進化学会第24回沼津大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 長寿命植物Shorea laevisの体細胞突然変異の蓄積パターンについて2022
- Author(s)
  今井亮介, 佐々木江理子, 笠原雅弘, 藤野健, 谷尚樹, 陶山佳久, 佐竹暁子
- Organizer
  第69回日本生態学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Shorea laevisの体細胞突然変異について2021
- Author(s)
  今井亮介, 佐々木江理子, 笠原雅弘, 藤野健, 谷尚樹, 陶山佳久, 佐竹暁子
- Organizer
  第53回種生物学シンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゲノムモザイクとしての植物の個体性2021
- Author(s)
  佐竹暁子, 富本創, 今井亮介, 佐々木江理子, 笠原雅弘, 藤野健, 谷尚樹, 陶山佳久
- Organizer
  日本植物学会第85回大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genetic mosaicism in long-lived treesゲノムモザイクとしての長寿命樹木の生き方2021
- Author(s)
  佐竹暁子, 富本創, 今井亮介, 佐々木江理子, 笠原雅弘, 藤野健, 谷尚樹, 陶山佳久
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 動物の死骸は誰のもの? : 死肉食性昆虫と雑食性食肉目の消費型競争2021
- Author(s)
  橋詰茜、松島義治、幸田良介、笠原康裕、大舘智志、中島啓裕
- Organizer
  日本生態学会第68回全国大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] イネ染色体添加系統におけるゲノムの高次構造解析2020
- Author(s)
  保坂碧, 真弓彩夏, 鈴木創, 笠原雅弘, 野々村賢一, 安井秀, 辻寛之
- Organizer
  日本育種学会第137回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] LPMX: Local Package Manager X edition & taw: Tiny Amazon Wrapper2019
- Author(s)
  Masahiro Kasahara
- Organizer
  第23回オープンバイオ研究会
- Data Source
  KAKENHI-PROJECT-16K16145
[Presentation] 10 Simple Reasons Why Graph Genome is Needed2019
- Author(s)
  笠原雅弘
- Organizer
  第10回Genome Graph研究会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Things that Docker does not Provide for Genome Informatics2018
- Author(s)
  Masahiro Kasahara
- Organizer
  Biohackathon 2018 Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16145
[Presentation] ゲノム解析へのグラフ構造の応用～ゲノムグラフの今～2018
- Author(s)
  笠原雅弘
- Organizer
  生命医薬情報学連合大会(IIBMP2018)
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Local Package Manager―Database of genome analysis tools with installation procedures2014
- Author(s)
  Masahiro Kasahara
- Organizer
  Genome Informatics
- Place of Presentation
  Churchill College, Cambridge, UK
- Year and Date
  2014-09-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Yet Another ShortRead AlignmentTool2011
- Author(s)
  Masahiro Kasahara, YASRAT
- Organizer
  The Biology of Genomes
- Place of Presentation
  The United States of America
- Year and Date
  2011-05-10
- Data Source
  KAKENHI-PROJECT-22700307
[Presentation] YASRAT : Yet Another Short Read Alignment Tool2011
- Author(s)
  Masahiro Kasahara
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor, New York
- Year and Date
  2011-05-10
- Data Source
  KAKENHI-PROJECT-22700307
[Presentation] New Alignment Algorithm without Realignment for More Accurate Indel Detection2011
- Author(s)
  Masahiro Kasahara
- Organizer
  The 34th Annual Meeting of the Molecular Biology Society of Japan
- Place of Presentation
  Pacifico Yokohama, Yokohama, JAPAN
- Year and Date
  2011-12-24
- Data Source
  KAKENHI-PLANNED-22129008
[Presentation] YASRAT : Yet-Another Sequence Alignment Tool2010
- Author(s)
  Masahiro Kasahara
- Organizer
  Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference on Genome Informatics
- Place of Presentation
  Hinxton, The United Kingdom
- Year and Date
  2010-09-16
- Data Source
  KAKENHI-PROJECT-22700307
[Presentation] Yet-Another Sequence Alignment Tool2010
- Author(s)
  Masahiro Kasahara, YASRAT
- Organizer
  Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference on Genome Informatics
- Place of Presentation
  Hinxton, The United Kingdom
- Year and Date
  2010-09-16
- Data Source
  KAKENHI-PROJECT-22700307
[Presentation] 立襟鞭毛虫Monosiga ovataゲノムプロジェクト : I. ゲノム2008
- Author(s)
  隈啓一, 岩部直之, 加藤和貴, 藤博幸, 廣瀬希, 菅裕, 宮田隆, 鈴木穣, 笠原雅弘, 新井理, 大石加寿子, 鹿児島浩, 豊田敦, 黒木陽子, 菅野純夫, 森下真一, 小原雄治, 藤山秋佐夫
- Organizer
  第31回日本分子生物学会年会・第81回日本生化学会大会(BMB2008)
- Place of Presentation
  神戸(兵庫)
- Data Source
  KAKENHI-PROJECT-17018030
[Presentation] Computer system design for efficient data-driven discovery using next-generation sequencers2008
- Author(s)
  Masahiro Kasahara and Shinichi Morishita
- Organizer
  第31回日本分子生物学会年会・第81回日本生化学会大会(BMB2008)
- Place of Presentation
  神戸(兵庫)
- Data Source
  KAKENHI-PROJECT-17018030
[Presentation] 立襟鞭毛虫Monosiga ovataゲノムプロジェクト : II. 動物の初期進化における遺伝子多様化2008
- Author(s)
  岩部直之, 隈啓一, 加藤和貴, 藤博幸, 廣瀬希, 佐々木剛, 菅裕, 宮田隆, 鈴木穣, 笠原雅弘, 新井理, 大石加寿子, 鹿児島浩, 豊田敦, 黒木陽子, 菅野純夫, 森下真一, 小原雄治, 藤山秋佐夫
- Organizer
  第31回日本分子生物学会年会・第81回日本生化学会大会(BMB2008)
- Place of Presentation
  神戸(兵庫)
- Data Source
  KAKENHI-PROJECT-17018030
[Presentation] ゲノムに刻まれた食虫植物の進化
- Author(s)
  (12)福島健児, Likai Mao, 今井飛将, 西山智明, 野澤昌文, 住川直美, 笠原雅弘, 柴田朋子, 重信秀治, Xiaodong Fang, 長谷部光泰
- Organizer
  NGS現場の会第三回研究会
- Place of Presentation
  神戸国際会議場
- Year and Date
  2013-09-04 – 2013-09-05
- Data Source
  KAKENHI-PLANNED-22128008
[Presentation] Incorporation of Long-Read Technologies into Hybrid-de novo Genome Sequencing Strategy: An Assessment on PacBio and Moleculo Read
- Author(s)
  Asao Fujiyama, Masahiro Kasahara, Atsushi Toyoda
- Organizer
  PLANT & ANIMAL GENOME ASIA 2014
- Place of Presentation
  SINGAPORE
- Year and Date
  2014-05-19 – 2014-05-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 第二世代シークエンサーによる高密度の遺伝学的地図作成法ヒメツリガネゴケへの適用例
- Author(s)
  鎌田寛彬, 笠原雅弘, 長谷部光泰, 西山智明
- Organizer
  NGS現場の会第三回研究会
- Place of Presentation
  神戸国際会議場
- Year and Date
  2013-09-04 – 2013-09-05
- Data Source
  KAKENHI-PLANNED-22128008

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Kasahara Masahiro 笠原 雅弘

KASAHARA Masahiro 笠原 雅弘

笠原 雅弘 カサハラ マサヒロ

Research Projects

Research Products

Co-Researchers

Graph Genome Analysis Incorporating Pangenome DiversityPrincipal Investigator

Principal Investigator

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Platform for Advanced Genome Science

Principal Investigator

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Genome informatics using non-volatile memoryPrincipal Investigator

Principal Investigator

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Method for sequencing and analyzing huge plant genomesPrincipal Investigator

Principal Investigator

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A system for accelerating large-scale genome analysisPrincipal Investigator

Principal Investigator

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Platform for Advanced Genome Science

Principal Investigator

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Exploring informatics for brain diseases based on personal genomics

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Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

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Development of algorithms for genome sequencing using next-generationDNA sequencersPrincipal Investigator

Principal Investigator

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Establishment of genome analyses methods for non-model organisms

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ポリモルフィズムに強い全ゲノムショットガン配列アセンブラの開発Principal Investigator

Principal Investigator

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Research Institution

Comparative Genomics Toward Understanding Genomic Bases of Evolution and Bio-Diversity : Support Groups

Principal Investigator

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[Book] 次世代シーケンサー活用術「１分子シーケンサーを用いた非モデル生物の de novo ゲノム解読」2015

Author(s)

Total Pages

Publisher

Data Source

Kasahara Masahiro 笠原雅弘

KASAHARA Masahiro 笠原雅弘

笠原雅弘カサハラマサヒロ