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HIRAKAWA Hideki  平川 英樹

ORCIDConnect your ORCID iD *help
Researcher Number 80372746
Other IDs
Affiliation (Current) 2025: 九州大学, 農学研究院, 教授
Affiliation (based on the past Project Information) *help 2022 – 2024: 公益財団法人かずさDNA研究所, ゲノム事業推進部, 主任研究員
2021: かずさDNA研究所, ゲノム情報解析施設, 施設長
2018 – 2020: 公益財団法人かずさDNA研究所, ゲノム情報解析施設, 施設長
2017: 公益財団法人かずさDNA研究所, 技術開発研究部, グループ長
2017: かずさDNA研究所, ゲノム情報解析グループ, グループ長 … More
2016: かずさDNA研究所, 植物ゲノム研究部, 主任研究員
2015: 公益財団法人かずさDNA研究所, 技術開発研究部, クループ長
2015: かずさDNA研究所, 研究員
2015: 公益財団法人かずさDNA研究所, 植物ゲノム研究部, 主任研究員
2014 – 2015: 公益財団法人かずさDNA研究所, 技術開発研究部, グループ長
2012 – 2013: 公益財団法人かずさDNA研究所, 植物ゲノム研究部, 主任研究員
2011: かずさDNA研究所, 主任研究員
2010: かずさDNA研究所, 植物ゲノム情報研究室, 研究員
2009: Kazusa DNA Research Institute, 植物ゲノム研究部, 研究員
2009: Kyushu University, 植物ゲノム研究部, 研究員
2008: Kyushu University, 大学院・農学研究院, 特任助教
2007: Kyushu University, 大学院・システム生命科学府, 特任助教
2006: 九州大学, 大学院・システム生命科学府, 特任助手
2005 – 2006: 九州大学, 大学院システム生命科学府, 特任助手
2004: 九州大学, 大学院・システム生命科学府, 特任助手 Less
Review Section/Research Field
Principal Investigator
Bioinformatics/Life informatics / Medium-sized Section 39:Agricultural and environmental biology and related fields / Basic Section 39010:Science in plant genetics and breeding-related / Horticultural science / Applied genomics
Except Principal Investigator
Basic Section 40010:Forest science-related / Transformative Research Areas, Section (IV) / Basic Section 39010:Science in plant genetics and breeding-related / Applied biochemistry / Horticultural science … More / Genome biology / Immunology / Morphological basic dentistry / Biological Sciences Less
Keywords
Principal Investigator
タンパク質立体構造 / 原因遺伝子 / 機能部位 / データベース / バイオインフォマティクス / Alphafold2 / 高次的機能SNP / AlphaFold2 / ゲノムワイド解析 / ウイルス抵抗性遺伝子 … More / 機能的SNP / microRNA / エピジェネティクス / small RNA / エピジェネティックス / フェージング / RNA-Seq解析 / ゲノム解読 / 花の模様形成 / 遺伝子機能 / SNP / SNP解析 / 酵素化学 / 配列解析 / 加水分解酵素 / メタゲノム解析 / 比較ゲノム / バイオインフォマテクス / グラム陽性細菌 / ゲノム比較 … More
Except Principal Investigator
ゲノム / 植物分子 / メタゲノム / エピゲノム / リシーケンシング / 次世代DNAシーケンサー / 遺伝メカニズム / 抵抗性遺伝領域 / 抵抗性 / マツ材線虫病 / クロマツ / 原因遺伝子 / 連鎖解析 / 変異系統 / 雌花 / カラマツ / 予測モデル / 環境応答 / 生態系 / 季節 / 揮発性有機化合物 / 気候変動 / 植物フェノロジー / エアロゾル / BVOC測定装置 / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / シングルセル解析 / オミックス解析 / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / 新規ゲノム配列決定 / 他殖性 / 自殖性 / 自家不和合性 / 二花柱性 / FePG1 / S-ELF3 / ゲノム解読 / ソバ / 生理機能評価 / 有用二次代謝産物生産 / 代謝工学と代謝再構築 / 生合成系の分子進化 / 植物アルカロイド生合成系 / 染色体操作技術 / 健康機能性 / 機能性代謝物 / メタボローム解析 / トランスクリプトーム解析 / ネギ類 / 倍加半数体 / 単一異種染色体添加系統シリーズ / 植物病害抵抗性 / 連鎖地図 / 染色体マーカー / Rhizobium / 根粒菌 / ミヤコグサ / 共生 / エンドファイト / 次世代DNAシーケンサ / インフォームドコンセント / GWAS / 個人ゲノム / de novo配列決定 / ChIP-seq / RNA-seq / 抗原受容体 / 免疫寛容 / アレルギー / NF-κB / B細胞 / T細胞 / ITAM / 免疫学 / アレルギー・ぜんそく / 癌 / シグナル伝達 / 免疫寛容・自己免疫 / 獲得免疫 / リンパ球 / 抗原認識 / 滑走運動 / Flavobacterium johnsoniae / タンパク分泌機構 / gingipain / Porphyromonas gingivalis / 歯周病 / 発現制御 / 発現解析 / 進化 / 遺伝子 / モデル化 Less
  • Research Projects

    (20 results)
  • Research Products

    (100 results)
  • Co-Researchers

    (150 People)
  •  Support activities to promote plant-climate feedbacks

    • Principal Investigator
      佐竹 暁子
    • Project Period (FY)
      2023 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (IV)
    • Research Institution
      Kyushu University
  •  Unraveling the Gene Regulatory Mechanisms of Plant Phenology

    • Principal Investigator
      佐竹 暁子
    • Project Period (FY)
      2023 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (IV)
    • Research Institution
      Kyushu University
  •  変異系統を用いたカラマツ雌花着花の原因遺伝子の特定とその発現制御機構の解明

    • Principal Investigator
      三嶋 賢太郎
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 40010:Forest science-related
    • Research Institution
      Forest Research and Management Organization
  •  Elucidation of the genetic mechanisms in the resistant locus towards the understanding of the resistance mechanisms against pine wilt disease

    • Principal Investigator
      平尾 知士
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 40010:Forest science-related
    • Research Institution
      Forest Research and Management Organization
  •  New developlents of breeding and evolutionary studies taken advantage of using information of porotein three-dimensional structures by Alphafold2Principal Investigator

    • Principal Investigator
      平川 英樹
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 39:Agricultural and environmental biology and related fields
    • Research Institution
      Kazusa DNA Research Institute
  •  Platform for Advanced Genome Science

    • Principal Investigator
      黒川 顕
    • Project Period (FY)
      2022 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
    • Research Institution
      National Institute of Genetics
  •  Development of functional SNPs of crops and its application for identification of useful genesPrincipal Investigator

    • Principal Investigator
      平川 英樹
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 39010:Science in plant genetics and breeding-related
    • Research Institution
      Kazusa DNA Research Institute
  •  Molecular mechanism for breaking down self-incompatibility in buckwheat

    • Principal Investigator
      Yasui Yasuo
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 39010:Science in plant genetics and breeding-related
    • Research Institution
      Kyoto University
  •  Epigenetics analysis for determination of floral patterns in each cellPrincipal Investigator

    • Principal Investigator
      Hirakawa Hideki
    • Project Period (FY)
      2017 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Horticultural science
    • Research Institution
      Kazusa DNA Research Institute
  •  Platform for Advanced Genome Science

    • Principal Investigator
      KOHARA Yuji
    • Project Period (FY)
      2016 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
    • Research Institution
      National Institute of Genetics
  •  Application of integrated omics analyses by using Allium bio-resources to onion breeding

    • Principal Investigator
      Masayoshi Shigyo
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Horticultural science
    • Research Institution
      Yamaguchi University
  •  Characterization of molecular evolution of plant isoquinoline alkaloid biosynthesis and its application to metabolic engineering

    • Principal Investigator
      Sato Fumihiko
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Research Field
      Applied biochemistry
    • Research Institution
      Kyoto University
  •  Genomic information of an endophyte of Lotus japonicus to facilitate investigation on the symbiosis

    • Principal Investigator
      KANEKO Takakazu
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Genome biology
    • Research Institution
      Kyoto Sangyo University
  •  Infererence of the SNP effects on gene functionsPrincipal Investigator

    • Principal Investigator
      Hirakawa Hideki
    • Project Period (FY)
      2012 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Applied genomics
    • Research Institution
      Kazusa DNA Research Institute
  •  Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

    • Principal Investigator
      KOHARA Yuji
    • Project Period (FY)
      2010 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      National Institute of Genetics
  •  Regulation of CARMA1 signaling and its role in immune homeostasis

    • Principal Investigator
      HARA Hiromitsu
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Immunology
    • Research Institution
      Saga University
  •  Secretion mechanism of pathogenic proteases and adhesions in the periodontal pathogen Porphyromonas gingivalis.

    • Principal Investigator
      NAKAYAMA Koji
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Morphological basic dentistry
    • Research Institution
      Nagasaki University
  •  Metagenome analysis for the classification of enzymes related to hydrolysis of bacterial cell wall by sequential and enzymatic analysisPrincipal Investigator

    • Principal Investigator
      HIRAKAWA Hideki
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Kyushu University
  •  Computational Biology for complicated genome system

    • Principal Investigator
      KUHARA Satoru
    • Project Period (FY)
      2005 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Kyushu University
  •  グラム陽性細菌におけるオルソログ遺伝子の分布の比較に関する研究Principal Investigator

    • Principal Investigator
      平川 英樹
    • Project Period (FY)
      2004 – 2006
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Kyushu University

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2011 2010 2009 2008 2006 2005 Other

All Journal Article Presentation Book

  • [Book] The Allium Genome2018

    • Author(s)
      Hideki Hirakawa
    • Pages
      129-143
    • Total Pages
      217
    • Publisher
      Springer
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] QTL analysis of femaleness in monoecious spinach and fine mapping of a major QTL using an updated version of chromosome-scale pseudomolecules2024

    • Author(s)
      Yamano Kaoru、Haseda Akane、Iwabuchi Keisuke、Osabe Takayuki、Sudo Yuki、Pachakkil Babil、Tanaka Keisuke、Suzuki Yutaka、Toyoda Atsushi、Hirakawa Hideki、Onodera Yasuyuki
    • Journal Title

      PLOS ONE

      Volume: 19 Issue: 2 Pages: e0296675-e0296675

    • DOI

      10.1371/journal.pone.0296675

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K05525, KAKENHI-PROJECT-22H04925
  • [Journal Article] Control of stem cell behavior by CLE-JINGASA signaling in the shoot apical meristem in Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Journal Title

      Current Biology

      Volume: 33(23) Issue: 23 Pages: 5121-5131.e6

    • DOI

      10.1016/j.cub.2023.10.054

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23939
  • [Journal Article] Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis2022

    • Author(s)
      Rai A, Hirakawa H, Rai M, Shimizu Y, Shirasawa K, Kikuchi S, Seki H, Yamazaki M, Toyoda A, Isobe S, Muranaka T, Saito K
    • Journal Title

      DNA Res.

      Volume: 29 Issue: 6 Pages: 1-14

    • DOI

      10.1093/dnares/dsac043

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K19082, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-20H02913
  • [Journal Article] An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis2022

    • Author(s)
      Takahashi K, Abe K, Kubota SI, Fukatsu N, Morishita Y, Yoshimatsu Y, Satoshi Hirakawa, Yoshiaki Kubota, Tetsuro Watabe, Shogo Ehata, Hiroki R. Ueda, Teppei Shimamura, Kohei Miyazono
    • Journal Title

      Nature Communiactions

      Volume: 13 Issue: 1 Pages: 5239-5239

    • DOI

      10.1038/s41467-022-32848-2

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K07094, KAKENHI-PROJECT-22K15435, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-18H05270, KAKENHI-PROJECT-20H03851, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PLANNED-17H06326, KAKENHI-ORGANIZER-19H05794, KAKENHI-PROJECT-20H00513
  • [Journal Article] Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping2022

    • Author(s)
      Daisuke Sekine、Satoshi Oku、Tsukasa Nunome、Hideki Hirakawa、Mai Tsujimura、Toru Terachi、Atsushi Toyoda、Masayoshi Shigyo、Shusei Sato、Hikaru Tsukazaki
    • Journal Title

      DNA Research

      Volume: 29(5) Issue: 5

    • DOI

      10.1093/dnares/dsac020

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Journal Article] A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits.2021

    • Author(s)
      Hideki Hirakawa, Atsushi Toyoda, Takehiko Itoh, Yutaka Suzuki, Atsushi J. Nagano, Suguru Sugiyama, Yasuyuki Onodera
    • Journal Title

      DNA Research

      Volume: 28 Issue: 3

    • DOI

      10.1093/dnares/dsab004

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis2021

    • Author(s)
      Yasuyuki Yamada, Hideki Hirakawa, Kentaro Hori, Yohei Minakuchi, Atsushi Toyoda, Nobukazu Shitan, Fumihiko Sato
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Issue: 4 Pages: 851-859

    • DOI

      10.1093/bbb/zbaa091

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.2021

    • Author(s)
      Satoshi Fujito, Turgut Yigit Akyol, Takuya Mukae, Tadayuki Wako, Ken-ichiro Yamashita, Hikaru Tsukazaki, Hideki Hirakawa, Keisuke Tanaka, Masayoshi Shigyo, et al.
    • Journal Title

      BMC Genomics

      Volume: 22 Issue: 1 Pages: 481-481

    • DOI

      10.1186/s12864-021-07803-y

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Genome features of common vetch (Vicia sativa) in natural habitats.2021

    • Author(s)
      Kenta Shirasawa, Shunichi Kosugi, Kazuhiro Sasaki, Andrea Ghelfi, Koei Okazaki, Atsushi Toyoda, Hideki Hirakawa, Sachiko Isobe
    • Journal Title

      Plant Direct

      Volume: 5 Issue: 10

    • DOI

      10.1002/pld3.352

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K07264, KAKENHI-PROJECT-21K06130, KAKENHI-PROJECT-16H06279
  • [Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021

    • Author(s)
      Rai Amit、Hirakawa Hideki、Nakabayashi Ryo、Kikuchi Shinji、Hayashi Koki、Rai Megha、Tsugawa Hiroshi、Nakaya Taiki、Mori Tetsuya、Nagasaki Hideki、Fukushi Runa、Kusuya Yoko、Takahashi Hiroki、Uchiyama Hiroshi、Toyoda Atsushi、Hikosaka Shoko、Goto Eiji、Saito Kazuki、Yamazaki Mami
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 405-405

    • DOI

      10.1038/s41467-020-20508-2

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K19155, KAKENHI-PLANNED-16H06454, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-17K08018, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K16391
  • [Journal Article] The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica).2020

    • Author(s)
      Shirasawa K, Yakushiji H, Nishimura R, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S
    • Journal Title

      Plant J

      Volume: 102 Issue: 6 Pages: 1313-1322

    • DOI

      10.1111/tpj.14703

    • Description
      in press
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice.2019

    • Author(s)
      Nakajima K, Ono M, Radovic U, Dizdarevic S, Tomizawa SI, Kuroha K, Nagamatsu G, Hoshi I, Matsunaga R, Shirakawa T, Kurosawa T, Miyazaki Y, Seki M, Suzuki Y, Koseki H, Nakamura M, Suda T, Ohbo K.
    • Journal Title

      Disease Models & Mechanisms

      Volume: 12 Pages: 40139-40139

    • DOI

      10.1242/dmm.040139

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K06261, KAKENHI-PROJECT-19K23831, KAKENHI-PROJECT-18H05284, KAKENHI-PROJECT-16H06279
  • [Journal Article] Molecular evidence for recent divergence of X- and Y-linked gene pairs in Spinacia oleracea L.2019

    • Author(s)
      Okazaki Yosuke、Takahata Satoshi、Hirakawa Hideki、Suzuki Yutaka、Onodera Yasuyuki
    • Journal Title

      PLOS ONE

      Volume: 14 Issue: 4 Pages: 0214949-0214949

    • DOI

      10.1371/journal.pone.0214949

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K05609, KAKENHI-PROJECT-16H06279
  • [Journal Article] Genome-wide analysis revealed that DZNep reduces tubulointerstitial fibrosis via down-regulation of pro-fibrotic genes.2018

    • Author(s)
      Mimura I, Hirakawa Y, Kanki Y, Nakaki R, Suzuki Y, Tanaka T, Aburatani H, Nangaku M.
    • Journal Title

      Sci Rep.

      Volume: 28 Issue: 1 Pages: 3779-3779

    • DOI

      10.1038/s41598-018-22180-5

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K09688, KAKENHI-PROJECT-16K15438, KAKENHI-PROJECT-16K19477, KAKENHI-PROJECT-15H04835, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-15KK0251, KAKENHI-PLANNED-26111003, KAKENHI-PROJECT-18H02824, KAKENHI-PROJECT-16H06279
  • [Journal Article] Molecular insights into the non-recombining nature of the spinach male-determining region.2018

    • Author(s)
      Kudoh T., M. Takahashi, T. Osabe, A. Toyoda, H. Hirakawa, Y. Suzuki, N. Ohmido, Y. Onodera
    • Journal Title

      Molecular Genetics and Genomics

      Volume: 293 Issue: 2 Pages: 557-568

    • DOI

      10.1007/s00438-017-1405-2

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Kmt2b conveys monovalent and bivalent H3K4me3 in spermatogonial stem cells at germline and embryonic promoters2018

    • Author(s)
      Tomizawa S, Kobayashi Y, Shirakawa T, Watanabe K, Mizoguchi K, Hoshi I, Nakajima K, Nakabayashi J, Singh S, Dahl A, Alexopoulou D, Seki M, Suzuki Y, Royo H, Peters6, A. H.F.M, Anastassiadis K, Stewart A.F. and Ohbo K
    • Journal Title

      Development

      Volume: 145 Issue: 23

    • DOI

      10.1242/dev.169102

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08156, KAKENHI-PROJECT-17K15549, KAKENHI-PROJECT-16H06279
  • [Journal Article] Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence2018

    • Author(s)
      Hori Kentaro、Yamada Yasuyuki、Purwanto Ratmoyo、Minakuchi Yohei、Toyoda Atsushi、Hirakawa Hideki、Sato Fumihiko
    • Journal Title

      Plant and Cell Physiology

      Volume: 59 Issue: 2 Pages: 222-233

    • DOI

      10.1093/pcp/pcx210

    • NAID

      120006384165

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-26221201, KAKENHI-PROJECT-16H06279
  • [Journal Article] RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a completeset of Allium fistulosum-A. cepa monosomic addition lines2017

    • Author(s)
      Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M.
    • Journal Title

      PLoS One

      Volume: 12 Issue: 8 Pages: e0181784-e0181784

    • DOI

      10.1371/journal.pone.0181784

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] Complete Genome Sequence of Super Biofilm-Elaborating Staphylococcus aureus Isolated in Japan.2017

    • Author(s)
      Yu L, Hisatsune J, Hirakawa H, Mizumachi E, Toyoda A, Yahara K, Sugai M.
    • Journal Title

      Genome Announc.

      Volume: 5 Issue: 41

    • DOI

      10.1128/genomea.01043-17

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.2015

    • Author(s)
      Shunichi Kosugi, Hideki Hirakawa, and Satoshi Tabata
    • Journal Title

      Bioinformatics

      Volume: 31 Issue: 23 Pages: 3133-3141

    • DOI

      10.1093/bioinformatics/btv465

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-26430200, KAKENHI-PROJECT-221S0002
  • [Journal Article] A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly2015

    • Author(s)
      H. Nishikawa, T Iijima, R Kajitani, et. al.
    • Journal Title

      Nature Genetics

      Volume: 47 Issue: 4 Pages: 405-409

    • DOI

      10.1038/ng.3241

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-24370066, KAKENHI-PROJECT-24380030, KAKENHI-PROJECT-26430200, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128005, KAKENHI-PROJECT-24370001, KAKENHI-PROJECT-15H05778
  • [Journal Article] Identification of the Carotenoid Modifying Gene PALE YELLOW PETAL 1 as an Essential Factor in Xanthophyll Esterification and Yellow Flower Pigmentation in Tomato (Solanum lycopersicum).2014

    • Author(s)
      Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A & Ezura H
    • Journal Title

      The Plant Journal

      Volume: 79 Issue: 3 Pages: 453-465

    • DOI

      10.1111/tpj.12570

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-25712004, KAKENHI-PROJECT-221S0002
  • [Journal Article] Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species2014

    • Author(s)
      Hideki Hirakawa, et al.
    • Journal Title

      DNA Research

      Volume: 21 Issue: 2 Pages: 169-181

    • DOI

      10.1093/dnares/dst049

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] Genome-Wide SNP Genotyping to Infer the Effects on Gene Functions in Tomato2013

    • Author(s)
      Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S.
    • Journal Title

      DNA research

      Volume: in press

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24510286
  • [Journal Article] A protein secretion system linked to bacteroidete gliding motility and pathogenesis.2010

    • Author(s)
      Sato K, Naito M, Yukitake H, Hirakawa H, Shoji M, McBride MJ, Rhodes RG, Nakayama K
    • Journal Title

      Proc Natl Acad Sci USA 107

      Pages: 276-281

    • NAID

      120006984618

    • Data Source
      KAKENHI-PROJECT-20249073
  • [Journal Article] Structural insight into the binding mode between the targeting domain of ALE-1 (92AA) and pentaglycine of peptidoglycan.2009

    • Author(s)
      Hideki Hirakawa, Hidenori Akita, Tamaki Fujiwara, Motoyuki Sugai, Satoru Kuhara
    • Journal Title

      Protein Engineering Design and Selection 22

      Pages: 385-391

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018026
  • [Journal Article] Structural insight into the binding mode between the targeting domain of ALE-1 (92AA) and pentaglycine of peptidoglycan.2009

    • Author(s)
      Hirakawa H., et al.
    • Journal Title

      Protein Eng Des Sel. 22

      Pages: 385-391

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Journal Article] Structural insight into the binding mode between the targeting domain of ALE-1 (92AA) and pentaglycine of peptidoglycan.2009

    • Author(s)
      Hirakawa H., Akita H., Fujiwara T., Sugai M., Kuhara S.
    • Journal Title

      Protein Eng Des Sel. 22

      Pages: 385-391

    • Data Source
      KAKENHI-PROJECT-19700276
  • [Journal Article] Structural insight into the binding mode between the targeting domain of ALE-1 (92AA) and pentaglycine of peptidoglycan2009

    • Author(s)
      Hideki Hirakawa, Hidenori Akita, Tamaki Fujiwara, Motoyuki Sugai, Satoru Kuhara
    • Journal Title

      Protein Engineering Design and Selection 22

      Pages: 385-391

    • Data Source
      KAKENHI-PROJECT-17018026
  • [Journal Article] Determination of the genome sequence of Porphyromonas gingivalis strain ATCC33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P.gingivalis.2008

    • Author(s)
      Naito M, Hirakawa H, Yamashita A, Ohara N, Shoji M, Yukitake H, Nakayama K, Toh H, Yoshimura F, Kuhara S, Hattori M, Hayashi T, Nakayama K
    • Journal Title

      DNA Res 15

      Pages: 215-225

    • Data Source
      KAKENHI-PROJECT-20249073
  • [Journal Article] Catalytic reaction mechanism of goose egg-white lysozyme by molecular modeling of enzyme-substrate complex2008

    • Author(s)
      Hirakawa H., et.al.
    • Journal Title

      J. Biochem 144

      Pages: 753-761

    • NAID

      10024914006

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Journal Article] Catalytic reaction mechanism of goose egg-white lysozyme by molecular modeling of enzyme-substrate complex.2008

    • Author(s)
      Hirakawa H., Ochi A., Kawahara Y., Kawamura S., Torikata T., Kuhara S.
    • Journal Title

      J. Biochem. 144

      Pages: 753-761

    • NAID

      10024914006

    • Data Source
      KAKENHI-PROJECT-19700276
  • [Journal Article] Genome sequence of the cat pathogen, Chlamydophila felis.2006

    • Author(s)
      Azuma Y, HiraKawa H, Yamashita A, Cai Y, Rahman MA, Suzuki H, Mitaku S, Toh H, Goto S, Murakami T, Sugi K, Hayashi H, Fukushi H, Hattori M, Kuhara S, Shirai M
    • Journal Title

      DNA Research 113

      Pages: 15-23

    • Data Source
      KAKENHI-PROJECT-16700274
  • [Journal Article] Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.2005

    • Author(s)
      Kuroda M., Yamashita A., Hirakawa H., Kumano M., Morikawa K., Higashide M., Maruyama A., Inose Y., Matoba K., Toh H., Kuhara S., Hattori M., Ohta T.
    • Journal Title

      Proc.Natl.Acad.Sci.U S A 102

      Pages: 13272-13277

    • Data Source
      KAKENHI-PROJECT-16700274
  • [Presentation] カラマツ着花変異系統を用いた雌花着花に関わる遺伝子座の探索2024

    • Author(s)
      三嶋賢太郎、白澤健太、井城泰一、平尾知士、平川英樹、福田陽子、永野聡一郎、福田有樹、宮本尚子、小長谷賢一、平岡裕一郎、田村明、倉本哲嗣、高橋誠
    • Organizer
      日本森林学会
    • Data Source
      KAKENHI-PROJECT-23K26951
  • [Presentation] 幹細胞らしさの抑制に関わる遺伝子の解析2024

    • Author(s)
      槻木 竜二、池田 陽子、森 仁志、青柳 優太、平川 英樹
    • Organizer
      第65回日本植物生理学会年会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Analysis of gene expression patterns in the stem cell zone in Marchantia polymorpha2024

    • Author(s)
      Go Takahashi、Ryuichi Nishihama、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      第65回日本植物生理学会年会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Stem cell-promoting CLE peptide signaling in the liverwort Marchantia polymorpha2023

    • Author(s)
      Yuki Hirakawa
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ゼニゴケJINGASA転写因子による幹細胞の分裂面と細胞アイデンティティーの制御機構2023

    • Author(s)
      髙橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      日本植物学会第87回大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023

    • Author(s)
      Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
    • Organizer
      15th International Symposium on Pre-Harvest Sprouting in Cereals
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Analysis of stem cell-promoting CLE peptide signaling2023

    • Author(s)
      Yuki Hirakawa、Go Takahashi、Tomohiro Kiyosue
    • Organizer
      11th Plant Peptides and Receptors Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Stem cell-promoting CLE peptide signaling in the shoot apical meristems of land plants2023

    • Author(s)
      Yuki Hirakawa
    • Organizer
      The 33rd International Conference on Arabidopsis Research
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Functional analysis of JINGASA transcription factor in stem cell dynamics in Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      The 33rd International Conference on Arabidopsis Research
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] モモ 25 品種の比較ゲノム解析2023

    • Author(s)
      衣川達己、谷澤靖洋、中村保一 、伊藤武彦、田中 裕之、平川 英樹、篠澤章久、馬 場正、小田 賢司、井出大輔、大和 勝幸、石丸恵
    • Organizer
      令和5年園芸学会春季大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ゼニゴケの分裂組織におけるERF転写因子の機能解析2023

    • Author(s)
      山屋 沙織、髙橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      日本植物学会第87回大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ホウレンソウから見出される多様な性表現型2023

    • Author(s)
      小野寺 康之、平川 英樹、豊田 敦、田中 啓介、パチャキル バビル
    • Organizer
      第46回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023

    • Author(s)
      Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
    • Organizer
      The 15th International Symposium on Pre-Harvest Sprouting in Cereals
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ゼニゴケの幹細胞動態調節における転写因子JINGASAの役割2023

    • Author(s)
      高橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      第64回日本植物生理学会年会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Functional analysis of target genes of MpCLE2 signaling in the stem cell zone of Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      11th Plant Peptides and Receptors Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Analysis of stem cell-promoting CLE peptide signaling in the liverwort Marchantia polymorpha2022

    • Author(s)
      Yuki Hirakawa
    • Organizer
      EMBO Workshop on An integrated view of early land plant evolution
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ゼニゴケ幹細胞領域におけるMpCLE2シグナル下流因子の探索と解析2022

    • Author(s)
      高橋 剛, 清末 知宏, 平川 有宇樹
    • Organizer
      第63回日本植物生理学会年会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ゼニゴケ幹細胞領域におけるNACファミリー遺伝子JINGASAの機能解析2022

    • Author(s)
      高橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      日本植物学会第86回大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] 染色体スケールのホウレンソウゲノム配列を活用した間性株の雌花率に関するQTL解析2022

    • Author(s)
      山野薫、豊田敦、平川英樹、小野寺康之
    • Organizer
      日本育種学会・日本作物学会北海道談話会年次講演会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ホウレンソウ間性株における雌花着生率に関するQTL解析2022

    • Author(s)
      山野 薫、豊田 敦、平川 英樹、小野寺 康之
    • Organizer
      日本育種学会第142回講演会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] ゼニゴケの頂端分裂組織活性を調節するMpCLE2シグナル下流因子の探索と解析2021

    • Author(s)
      髙橋 剛, 清末 知宏, 平川 有宇樹
    • Organizer
      日本植物学会第85回大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] 植物幹細胞活性の促進因子としてのCLEペプチドの役割2021

    • Author(s)
      平川 有宇樹
    • Organizer
      第7回幹細胞研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ゼニゴケにおけるMpCLE2ペプチドシグナル下流因子の探索2021

    • Author(s)
      高橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      第62回日本植物生理学会年会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Spinacia属植物の性染色体の構造比較2021

    • Author(s)
      小野寺 康之, 藤田 拓希, 杉山 優, 豊田 敦, 平川 英樹
    • Organizer
      日本育種学会第140回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] CLE peptide as a positive regulator of plant stem cell identity2021

    • Author(s)
      Yuki Hirakawa
    • Organizer
      3rd webinar of the IRN France-Japan Frontiers in Plant Biology on “Development and Adaptation”
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] クロマツにおけるRNA-Seqデータからの高密度連鎖地図の作製2021

    • Author(s)
      平尾知士、平川英樹、松永孝治、三嶋賢太郎、能勢美峰
    • Organizer
      第132回日本森林学会大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ヒメツリガネゴケ重力屈性変異体gtrの表現型解析と原因遺伝子探索2021

    • Author(s)
      小針寛乃, 逵ローレンスかおる, 豊田敦, 平川英樹, 日渡祐二
    • Organizer
      東北植物学会第11回大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] 新規ホウレンソウ pseudomolecule を用いた重要育種形質のQTL解析2020

    • Author(s)
      小野寺 康之、杉山 優、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、平川 英樹
    • Organizer
      日本育種学会第138回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウ育種の効率化に向けた Pseudomoleculeの構築2020

    • Author(s)
      平川 英樹、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、杉山 優、小野寺 康之
    • Organizer
      日本育種学会第138回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウ性決定候補遺伝子の発現パターンの解析2020

    • Author(s)
      須藤有紀, 長部高之, 平川 英樹, 鈴木穣, 小野寺康之
    • Organizer
      日本育種学会第137回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウ育種の効率化に向けたPseudomoleculeの構築2020

    • Author(s)
      平川英樹
    • Organizer
      日本育種学会第138回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] genome Assembly and Characterization of Medicinal Plant Sophora Flavescens2020

    • Author(s)
      Amit Rai, Yohei Shimizu, Hideki Hirakawa, Mami Yamazaki, Kazuki Saito
    • Organizer
      Plant and Animal Genome Conference XXVIII ; San Diego, USA
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウ性決定候補遺伝子の特徴付け2020

    • Author(s)
      小野寺康之・須藤有紀・平川英樹・鈴木穣
    • Organizer
      園芸学会 令和2年度春季大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ソバ属植物におけるゲノムの進化2019

    • Author(s)
      FAWCETT Jeffrey, 上野まりこ, 大澤良, 大田竜也, 齊藤大樹, 齊藤大樹, 白澤健太, 竹島亮馬, 中崎鉄也, 西村和紗, 原尚資, 原尚資, 平川英樹, 松井勝弘, 水野信之, 安井康夫
    • Organizer
      日本遺伝学会
    • Data Source
      KAKENHI-PROJECT-18H02177
  • [Presentation] Spinacia属における性決定候補遺 伝子の探索および構造解析2019

    • Author(s)
      岡崎洋助, 平川英樹, 小野 寺康之
    • Organizer
      日本育種学会・日本作物学会 北海道談話会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] イチジク株枯真性抵抗性を有するイヌビワの全ゲノム解読2019

    • Author(s)
      白澤健太・薬師寺博・森田剛成・軸丸祥大・池上秀利・豊田 敦・平川英樹・磯部祥子
    • Organizer
      園芸学会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ソバにおける異型花型自家不和合性遺伝子座のゲノム解析2019

    • Author(s)
      大田竜也, 相井城太郎, 上野まりこ, 大澤良, 齊藤大樹, 齊藤大樹, 白澤健太, 竹島亮馬, 中崎鉄也, 西村和紗, 原尚資, 原尚資, 平川英樹, FAWCETT J, 松井勝弘, 水野信之, 安井康夫
    • Organizer
      日本育種学会
    • Data Source
      KAKENHI-PROJECT-18H02177
  • [Presentation] Genome sequence analysis on Ficus carica and F. erecta for the Ceratocystis canker resistance breeding programs in fig2019

    • Author(s)
      Shirasawa K, Yakushiji H, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S
    • Organizer
      VI International Symposium on Fig
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウ性決定候補遺伝子の発現解析2019

    • Author(s)
      須藤有紀, 長部高之, 平川 英樹, 鈴木穣, 小野寺康之
    • Organizer
      日本育種学会・日本作物学会 北海道談話会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Searching for the genes involved in the dramatic inprovement of the percentage of fruit set in the F1 hybrids of Capsicum chinense2019

    • Author(s)
      Yamazaki A, Shirakawa K, Hosokawa M.
    • Organizer
      17th EUCARPIA meeting on Capsicum and Eggplant
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウの性決定候補遺伝子の探索2019

    • Author(s)
      長部高之, 岩渕恵佑, 平川英樹, 鈴木穣, 小野寺康之
    • Organizer
      日本育種学会 第136回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウY染色体雄特異的領域の座乗遺伝子同定および進化年代推定2019

    • Author(s)
      岡崎 洋助, 平川 英樹, 鈴木 穣, 小野寺 康之
    • Organizer
      園芸学会 平成31年度春季大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Studies on skeletal muscle atrophy in space - what zebrafish experienced in a space tour.2018

    • Author(s)
      Fuminori Sato, Choi Minyong, Zi Wang, Quan Wu, Ikumi Fujita, Misato Iwase, Satoko Uchida, Toru Sakimura, Yasushi Kono, Masaki Shirakawa, Fumiaki Tanigaki, Masahiro Chatani, Akira Kudo, Akihisa Takahashi, Junya Kobayashi, Kiyomi Imamura, Terumi Horiuchi, Satoshi Furukawa, Tadashi Muratani, Sumio Sugano, Yutaka Suzuki, Fumio Matsuzaki, Koichi Kawakami, and Atsuko Sehara-Fujisawa.
    • Organizer
      CDB Symposium
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Allium cepaにおける全ゲノム解読に向けた取り組みについて2018

    • Author(s)
      執行正義・Mostafa Abdelrahman・佐藤修正・平川英樹・辻村真衣・寺地徹・豊田敦
    • Organizer
      園芸学会平成30年度春季大会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウの雄決定遺伝子座周辺から見出された組換抑制領域の分子構造2018

    • Author(s)
      小野寺康之, 工藤友裕, 髙橋光彦, 長部高之, 豊田敦, 平川英樹, 鈴木穣, 近江戸伸子
    • Organizer
      園芸学会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] ホウレンソウの性染色体における組換え抑制領域の進化年代の推定2018

    • Author(s)
      岡崎 洋助, 平川 英樹, 鈴木 穣, 小野寺 康之
    • Organizer
      日本育種学会 第134回講演会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Role and priming activity of Kmt2b for the spermatogonial stem cell epigenome.2018

    • Author(s)
      Tomizawa S, Kobayashi Y, Shirakawa T, Hoshi I, Nakajima K, Royo H, Peters AHFM, Anastassiadis K, Stewart AF, Ohbo K.
    • Organizer
      第123回日本解剖学会総会全国学術集会
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] High-Throughput SNP Discovery and Genotyping in Unique Genetic Stocks for Constructing a High Resolution Genetic Linkage Map of Allium cepa2018

    • Author(s)
      Masayoshi Shigyo, Shusei Sato, Hideki Hirakawa
    • Organizer
      Plant & Animal Genome Conference XXVI
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Studies on skeletal muscle regeneration and atrophy? What zebrafish experienced in a space tour.2017

    • Author(s)
      Fuminori Sato, Choi Minyong, Zi Wang, Quan Wu, Ikumi Fujita, Misato Iwase, Satoko Uchida, Toru Sakimura, Yasushi Kono, Masaki Shirakawa, Fumiaki Tanigaki, Masahiro Chatani, Akira Kudo, Akihisa Takahashi, Junya Kobayashi, Kiyomi Imamura, Terumi Horiuchi, Satoshi Furukawa, Tadashi Muratani, Sumio Sugano, Yutaka Suzuki, Fumio Matsuzaki, Koichi Kawakami, and Atsuko Sehara-Fujisawa
    • Organizer
      第12回研究所ネットワーク国際シンポジウム
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Kmt2b is required for spermatogenesis through both bivalent and monovalent priming of the spermatogonial stem cell epigenome.2017

    • Author(s)
      Tomizawa S, Kobayashi Y, Shirakawa T, Hoshi I, Nakajima K, Royo H, Peters AHFM, Anastassiadis K, Stewart AF, Ohbo K
    • Organizer
      EMBO conference : Nuclear structure and dynamics
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] 同質六倍体サツマイモ栽培種のゲノム解読に向けた取り組み2017

    • Author(s)
      白澤健太, 長崎英樹, 田中 勝, 岡田吉弘, 髙畑康浩, 平川英樹, 磯部祥子
    • Organizer
      日本植物学会第81回大会シンポジウム
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Allelic imbalance analysis based on haplotype-specific transcripts in F1 reciprocal cross in pepper.2017

    • Author(s)
      Andrea Ghelfi, Kenta Shirasawa, Hideki Hirakawa, Sachiko Isobe, Munetaka Hosokawa
    • Organizer
      第7回植物RNA研究ネットワークシンポジウム
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] Allium capa における超高密度連鎖地図作成の試み2016

    • Author(s)
      山北和香・竹富詩歩・佐藤修正・ 平田翔・平川英樹・田中啓介・峯洋子・山内直樹・執行正義
    • Organizer
      園芸学会平成28年度春季大会
    • Place of Presentation
      東京農業大学 厚木キャンパス(神奈川県・厚木市)
    • Year and Date
      2016-03-26
    • Data Source
      KAKENHI-PROJECT-26292020
  • [Presentation] ネギ属トランスクリプトームデータベースAllium TDBを活用したAllium cepa連鎖地図の構築2016

    • Author(s)
      藤戸聡史・山下謙一郎・若生忠幸・塚崎光・山北和香・佐藤修正・平川英樹・執行正義
    • Organizer
      園芸学会平成28年度秋季大会
    • Place of Presentation
      名城大学(愛知県名古屋市)
    • Year and Date
      2016-09-11
    • Data Source
      KAKENHI-PROJECT-26292020
  • [Presentation] ネギ属バイオリーソースを用いたトランスクリプトーム解析データの活用2015

    • Author(s)
      執行正義・佐藤修正・Abdelrahman, Mostafa ・ 平田翔・平川英樹・田中啓介・峯洋子・杉山信男・山内直樹
    • Organizer
      園芸学会平成27年度秋季大会
    • Place of Presentation
      徳島大学 三島キャンパス(徳島県・徳島市)
    • Year and Date
      2015-09-26
    • Data Source
      KAKENHI-PROJECT-26292020
  • [Presentation] ネギ単一異種染色体添加系統のRNA-Sequencing によるシャロット染色体マーカーの大量取得2015

    • Author(s)
      山北和香・佐藤修正・Abdelrahman, Mostafa・平田翔・平川英樹・田中啓介・峯洋子・山内直樹・執行正義
    • Organizer
      園芸学会平成27年度秋季大会
    • Place of Presentation
      徳島大学 三島キャンパス(徳島県・徳島市)
    • Year and Date
      2015-09-26
    • Data Source
      KAKENHI-PROJECT-26292020
  • [Presentation] ゲノムアセンブリのギャップを高精度で埋めるツール GMcloser の開発2013

    • Author(s)
      小杉 俊一、平川 英樹、田畑 哲之
    • Organizer
      NGS現場の会 第3回研究会
    • Place of Presentation
      神戸国際会議場
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] SH3-Guk domain interaction regulating Carma1 micro-cluster formation is essential for antigen receptor-induced NF-κB activation2011

    • Author(s)
      Hiromitsu Hara, Tadashi Yokosuka, Chitose Ishihara, Sinsuke Yasukawa, Hideki Hirakawa, Eiichi Iizasa, Hiroki Yoshida and Takashi Saito
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PROJECT-21390153
  • [Presentation] Staphylococcus capitis EPK1が産生するGlycylglycine endopeptidase(ALE-1)の細胞壁ペプチドグリカン認識機構の解明.2009

    • Author(s)
      平川英樹, 秋田英範, 藤原環, 菅井基行, 久原哲
    • Organizer
      第3回日本ゲノム微生物学会
    • Place of Presentation
      東京
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Presentation] Staphylococcus capitis EPK1が産生するGlycylglycine endopeptidase(ALE-1)の細胞壁ペプチドグリカン認識機構の解明2009

    • Author(s)
      平川英樹
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      中央大学理工学部
    • Year and Date
      2009-03-06
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Presentation] Staphylococcus capitis EPK1が産生するGlycylglycine endopeptidase (ALE-1)の細胞壁ペプチドグリカン認識機構の解明2009

    • Author(s)
      平川英樹
    • Organizer
      第3回日本ゲノム微生物学会
    • Place of Presentation
      中央大学(東京)
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Presentation] Satoru Kuhara (2009) The gene expression networks of Clostridium perfringens strain 13 from gene expression profiles2009

    • Author(s)
      Naoya Kawamura, Hideki Hirakawa, Masato Oono, Kaori Ootani, Touru Shimizu
    • Organizer
      第32回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-17018026
  • [Presentation] The gene expression networks of Clostridium perfringens strain 13 from gene expression profiles2008

    • Author(s)
      Hirakawa H, Ohno M, Furuichi E, Otani K, Shimizu T, Kuhara S.
    • Organizer
      ECCB'08 European Conference on Computational Biology
    • Place of Presentation
      Cagliari, Sardinia, Italy
    • Year and Date
      2008-09-25
    • Data Source
      KAKENHI-PROJECT-17018026
  • [Presentation] グース型リゾチームにおけるTyr147変異体の活性, 安定性および構造変化に関する研究.2008

    • Author(s)
      平川英樹, 仲宗根公一, 河村俊介, 鳥潟隆雄, 久原哲
    • Organizer
      日本生化学会
    • Place of Presentation
      神戸
    • Data Source
      KAKENHI-PROJECT-19700276
  • [Presentation] ミヤコグサエンドファイトRhizobium sp. KAW12のゲノム解析

    • Author(s)
      金子貴一、杉谷 翔、原田 龍一、平川 英樹、川原田 泰之、Elena Simona Radutoiu、佐藤修正
    • Organizer
      植物微生物研究会 第24回研究交流会
    • Place of Presentation
      佐賀大学(佐賀県佐賀市)
    • Year and Date
      2014-09-19 – 2014-09-21
    • Data Source
      KAKENHI-PROJECT-25430175
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  • 82.  Tange Shoichiro (40571211)
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    # of Collaborated Products: 0 results
  • 83.  OGASAWARA Osamu (00435512)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 84.  Tanizawa Yasuhiro (90836511)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 85.  Kondo Shinji (30415161)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 86.  kiryu hisanori (80415778)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 87.  Kajitani Rei (40756706)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 88.  TASHIRO Kosuke (00192170)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 89.  Suzuki Hiromu (20381254)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 14 results
  • 90.  NOSHO KATSUHIKO (10597339)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 91.  KAI Masahiro (80260777)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 92.  澤田 有司 (00415176)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 93.  伊藤 真一 (30243629)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 94.  若生 忠幸 (70414670)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 95.  細川 宗孝 (40301246)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 96.  南 博道 (90433200)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 97.  細江 智夫 (10287849)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 98.  山田 泰之 (20770879)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 99.  松井 勝弘 (30343974)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 100.  中崎 鉄也 (60217693)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 101.  西村 祐貴 (20783012)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 102.  中谷 明弘 (60301149)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 103.  波江野 洋 (70706754)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 104.  島村 徹平 (00623943)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 105.  熊谷 雄太郎 (00528408)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 106.  矢崎 一史 (00191099)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 107.  永野 惇 (00619877)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 108.  塩尻 かおり (10591208)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 109.  川勝 泰二 (30435614)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 110.  須藤 健悟 (40371744)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 111.  関本 奏子 (40583399)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 112.  棟方 涼介 (40790275)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 113.  岩山 幸治 (90737040)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 114.  山口 暢俊 (90767899)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 115.  増田 税 (60281854)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 116.  三嶋 賢太郎 (30438098)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 117.  平尾 知士 (90457763)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 118.  松永 孝治 (40415039)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 119.  KURIYAMA Mariko
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 120.  ANZAI Yuichiro
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 121.  OKADA Kiyotaka
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 122.  SAKAKI Yoshiyuki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 123.  TAKAKU Fumimaro
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 124.  TOYOSHIMA Kumao
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 125.  NAKAMURA Keiko
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 126.  HOTTA Yoshiki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 127.  YONEZAWA Akinori
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 128.  YOSHIKAWA Hiroshi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 129.  YOSHIDA Mitsuaki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 130.  INOKO Hidetoshi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 131.  TODA Tatsushi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 132.  INAZAWA Johji
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 133.  GOJOBORI Takashi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 134.  URUSHIHARA Hideko
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 135.  TAKEDA Hiroyuki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 136.  SHIROISHI Toshihiko
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 137.  ITOH Takashi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 138.  SATOH Noriyuki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 139.  MATSUDA Hideo
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 140.  GOTO Susumu
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 141.  TSUDA Masataka
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 142.  KOSUGI Shunichi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 143.  NANGAKU Masaomi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 144.  TANAKA Tetsuhiro
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 145.  NAGAMATSU Go
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 146.  関 光
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 147.  有泉 亨
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 148.  大保 和之
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 149.  吉松 康裕
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 150.  津川 裕司
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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