Kidera Akinori 木寺詔紀

… Alternative Names

KIDERA Akinori 木寺詔紀

木寺紹紀キデラアキノリ

木寺詔記キデラアキノリ

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Researcher Number	00186280
Other IDs
Affiliation (Current)	2025: 横浜市立大学, 生命医科学研究科, 教授
Affiliation (based on the past Project Information) *help	2016 – 2018: 横浜市立大学, 生命医科学研究科, 教授 2014: 横浜市立大学, 生命医科学研究科, 教授 2013: 横浜市立大学, その他の研究科, 教授 2009 – 2012: Yokohama City University, 生命ナノシステム科学研究科, 教授 2008: Yokohama City University, 国際総合科学研究科, 教授 … More 2006 – 2007: 横浜市立大学, 大学院・国際総合科学研究科, 教授 2005: 横浜市立大学, 大学院国際総合科学研究科, 教授 2004 – 2005: Yokohama City University, Graduate School of Integrated Sciences, Professor, 大学院総合理学研究科, 教授 2001 – 2004: okohama City University, Graduate School of Intergrated Science, Professor, 大学院・総合理学研究科, 教授 2002: Yokohama City University, Graduate School of Integrated Science, Professor, 大学院総合理学研究科, 教授 1996 – 2000: 京都大学, 大学院・理学研究科, 助教授 Less
Review Section/Research Field	Principal Investigator Biophysics / Biological Sciences / Biophysics / Physical chemistry / Science and Engineering Except Principal Investigator Biological Sciences / Biophysics / Science and Engineering
Keywords	Principal Investigator 分子シミュレーション / 蛋白質 / タンパク質 / タンパク質ダイナミクス / 生物物理 / ダイナミクス / mode coupling / 非線型振動 / タンパク質複合体 / 主成分解析 … More / 線形応答 / 線形応答理論 / 構造・機能予測 / 分子動力学シミュレーション / アクアポリン / 計算物理学 / 精密化 / アロステリック創薬 / タンパク質リン酸化酵素 / アロステリック相互作用 / シグナル伝達 / principal component / normal modes / diffusion / vibration / anharmonic motions / molecular dynamics / protein dynamics / 多様体 / 基準振動モード / 粗視化 / 立体構造変化 / 回転緩和運動 / 拡散運動 / 振動エネルギー緩和 / 非調和運動 / aquaporin / molecular dynamics simulation / linear response theory / probabilistic alignment / neutron scattering / protein function / protein structure / protein complex / イムノグロブリン / 糖 / モノヌクレオチド / 結合部位 / 構造変化 / NMR / 構造予測 / 分子機能 / 立体構造 / ダイナミックプログラミング / 確率的アライメント法 / ダイナミクプログラミング / 分子動力学計 / 確率的アラインメント法 / 中性子散乱 / タンパク質機能 / タンパク質立体構造 / タンパク合体 / myoglobin / Fermi resonance / vibrational reluxation / anharmonic vibration / proteins / ミオグロビンL / フレルミ共鳴 / ミオグロビン / フェルミ共鳴 / モードカップリング / 振動緩和 / 非線形振動 / Protein / Refinement / Atomic Scattering Factor / Bacteriorhodopsin / Software / Electron Microscope / Electron Diffraction / Electron Crystallography / ソフトウエアー / 原子散乱因子 / バクテリオロドプシン / ソフトウェアー / 電子顕微鏡 / 電子線回折 / 電子線結晶構造解析 / 経路探索 / 拡張サンプリング / サンプリング / 自由エネルギー / タンパク質間相互作用 / 過渡的複合体 / マルチスケールモデル / 遭遇複合体 / 分散共分散行列 / 分子動力学計算 / タンパク質側鎖 / タンパク質・タンパク質間相互作用 / タンパク質-タンパク質間相互作用 / 二面角形ダイナミクス / データベース / 基質結合→構造変化 / タンパク質立体構造データ / IP_3受容体 / Transducer / Sensory Rhodosin II / IP3受容体 / HAMPドメイン / HtrII複合体 / SRII / 膜タンパク質 / 変異型 / 水透過係数 / 分子シュミレーション / 複合体 / トランスデューサ / フォボロドプシン / 膜蛋白質 / 基準振動精密化 / 温度因子 / N比 / S / Free-R因子 / X線結晶構造解析 … More Except Principal Investigator タンパク質 / 膜蛋白質 / 膜タンパク質 / FAMSBASE / 立体構造 / 蛋白質 / X線結晶解析 / 分子シミュレーション / 分子動力学 / 3Dキーノート / らん藻ゲノム / タンパク質立体構造予測 / ゲノム機能予測 / ホモロジーモデリング / ダイナミックス / 安定性 / Module / Structural prediction / Principle of architecture / Three-dimensional structure / Protein / モジュール / 構造予測 / 構築原理 / 分子認識 / シミュレーション / アクアポリン / 水チャネル / タンパク質立体構造 / 計算生物学 / Alternative splicing / Hydrophobic cluster / Sugar-protein interaction / Human genome annotation / Cyanobacterium genome / 3D-keynote / Prediction of genome function / 疎水殻の自動同定 / 確率的アラインメント法 / タンパク質-リガンド相互作用予測法 / 形質転換 / タンパク質フォールディング / タンパク質-糖鎖予測 / サブユニット相互作用 / 疎水核 / タンパク質-糖鎖相互作用 / すき間 / ヒトゲノムアノテーション / Het PDB-Navi / タンパク質-リガンド相互作用 / 水和 / タンパク質-RNA相互作用 / RNA・タンパク質相互作用 / HetPDB-Navi / タンパク質間ネットワーク / 選択的スプライシング / 疎水クラスタ / 糖鎖-タンパク質相互作用 / ヒトゲノム・アノテーション / Molecular simulation / Homology modeling / Critical Assessment of Techniques for Protein Structure Prediction / Protein structure prediction / Genome function prediction / Bioinformatics / Computational biology / 国際予測コンテストCASP4 / SOSUI / Gtop / 予測生物学 / アブイニシオ / CASP5 / 構造予測国際コンテストCASP / 生命情報科学 / Database / Brownian Dynamics / Molecular Surface / Supramolecular Structure / Simulation / Molecular Recognition / Homology Modeling / Molecular Dynamics / マルチカノニカル統計 / 構造探索 / ループ構造 / チャネル蛋白質 / データベース / ブラウニアン・ダイナミクス / 分子表面 / 超分子立体構造 / シミュレーション計算 / conformational substates / normal modes / Mossbauer spectroscopy / X-ray crystallography / relaxation time / glass-transition / dynamics / protein / コンフォーメショナルサブステート / 基準振動 / メスバウアースペクトロスコピー / 緩和時間 / ガラス転移 / 動力学 / X-ray crystal analyses / Calorimetry / Lysozyme / Protein Folding / Dynamics of Protein / Stability of Protein / Protein Conformation / 熱測定 / 折れたたみ機構 / カロリメトリー / リゾチーム / タンパク質の折れたたみ機構 / タンパク質のダイナミックス / タンパク質の安定性 / Dynamics / Design / Stability / Folding / 比較分類 / 比較・分類 / 折れたたみ / 機能 / 進化 / 公開講演会 / 出版 / デザイン / おれたたみ / Threading / principal variety of protein folds / Structural comparison / 相同蛋白質 / タンパク質デザイン / モデリング / 構造分類 / リゾチウム / キメラタンパク / ファージディスプレイ / 立体構造予測 / 立体構造比較 / スレッティング / スレッディング / 立体構造基本型 / 構造比較 / 遷移状態 / 剛体分子動力学 / 並列計算 / 線形応答理論 / 構造変化 / バイオインフォマティクス / Trp Cage / アンフォールディング / PhoB / DNA結合タンパク質 / αラクトアルブミン / フォールディング / ATPase / X線結晶 / イオンポンプ / 能動輸送 / 生物物理 / 水と生体分子のダイナミクス / 蛋白質の物性 / 蛋白質の構造 / 蛋白質の機能 / 水の構造と物性 / 生体高分子 / 蛋白質フォールディング / 電子線結晶解析 / クライオ技術 / 画像解析 / 大量発現 / 電子回折 / 立体構造解析 / AQP3 / AQP4 / クライオ電子顕微鏡 / 電子線結晶学 / バキュロウイルス / Sf9細胞 / 分子動力学シミュレーション / 二次元結晶 / 電子顕微鏡 / 電子線結晶構造解析 / アクアポーリン / プロテオミックス / プロテオーム / 機能ゲノミックス / 構造ゲノミックス / ゲノム情報 / 構造生物学 Less

Mechanism of signal transduction regulated by the interactions to cell membranePrincipal Investigator
- Principal Investigator
  
  Kidera Akinori
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
Enhanced structural sampling for allosteric drug designPrincipal Investigator
- Principal Investigator
  
  Kidera Akinori
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
The role of the encounter complexes studied by molecular simulations of the protein complex formation processes.Principal Investigator
- Principal Investigator
  
  AKINORI Kidera
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
タンパク質側鎖の平衡揺らぎと基質結合に伴う応答的運動Principal Investigator
- Principal Investigator
  
  木寺詔紀
- Project Period (FY)
  2009 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Yokohama City University
Identification of the relationship between protein structural changes and ligand binding on the basis of 3D protein structuresPrincipal Investigator
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究Principal Investigator
- Principal Investigator
  
  木寺詔紀
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究Principal Investigator
- Principal Investigator
  
  木寺詔紀
- Project Period (FY)
  2005 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
分子シミュレーションによる蛋白質フォールディング・分子認識機構の解明
- Principal Investigator
  
  IKEGUCHI Mitsunori
- Project Period (FY)
  2003 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Yokohama City University
P型イオンポンプによる能動輪送機構の構造的解明
- Principal Investigator
  
  豊島近
- Project Period (FY)
  2002 – 2006
- Research Category
  
  Grant-in-Aid for Creative Scientific Research
- Research Institution
  The University of Tokyo
Study of Vibrational Energy Transfer in ProteinsPrincipal Investigator
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2002 – 2003
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Physical chemistry
- Research Institution
  Yokohama City University
水チャネルの選択性とその制御機構の解明
- Principal Investigator
  
  MITSUOKA Kaoru
- Project Period (FY)
  2001 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Advanced Industrial Science and Technology
  Kyoto University
蛋白質フォールディング研究の企画調査
- Principal Investigator
  
  KUWAJIMA Kunihiro
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  The University of Tokyo
Prediction of structure and function of protein complexesPrincipal Investigator
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2001 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
Free-R因子を上げずにより詳細な蛋白質モデルを構築するための結晶構造精密化法Principal Investigator
- Principal Investigator
  
  木寺詔紀 (木寺詔記)
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Structural and Informatics Basis of Channel Protein Interactions
- Principal Investigator
  
  NAKAMURA Haruki
- Project Period (FY)
  2000 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
the maintenance and circulation of protein higher-order structural information and the evaluation of prediction information
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Decoding of genome function and evolution based on the 3D structures of proteins
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  2000 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nagahama Institute of Bio-Science and Technology
  Nagoya University
プロテオーム時代の計算情報生物学
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University
Energy Transfer in a Protein Molecule: From Chemical Reaction to Structural ChangePrincipal Investigator
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
  Kyoto University
Administration of reseaches on principles of protein architecture
- Principal Investigator
  
  GO Nobuhiro
- Project Period (FY)
  1997 – 1998
- Research Category
  
  Grant-in-Aid for international Scientific Research
- Research Field
  
  Biophysics
- Research Institution
  KYOTO UNIVERSITY
Program System for Protein Electron CrystallographyPrincipal Investigator
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  1997 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  KYOTO UNIVERSITY
Protein structure, comparison, prediction, and design
- Principal Investigator
  
  GO Nobuhiro, 野口俊之
- Project Period (FY)
  1995 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  KYOTO UNIVERSITY
  Nagoya University
Administration of researches on principles of protein architecture
- Principal Investigator
  
  GO Nobuhiro
- Project Period (FY)
  1995 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  KYOTO UNIVERSITY
タンパク質立体構造の安定性・ダイナミックス・折れたたみ機構
- Principal Investigator
  
  YUTANI Katsuhide
- Project Period (FY)
  1995 – 1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  OSAKA UNIVERSITY

[Book] 岩波講座　計算科学　4巻　計算と生命2012
- Author(s)
  木寺詔紀
- Total Pages
  59
- Publisher
  岩波書店
- Data Source
  KAKENHI-PROJECT-23247027
[Book] 超多自由度系の新しい科学 3.1章生体分子の計算機シミュレーション2010
- Author(s)
  木寺詔紀(分担)
- Total Pages
  40
- Publisher
  共立出版
- Data Source
  KAKENHI-PROJECT-20370063
[Book] Proteins : Energy Heat and Signal Flow2009
- Author(s)
  木寺詔紀, 森次圭, 松永泰佑, 藤崎弘士
- Total Pages
  20
- Publisher
  Taylor and Francis/CRC Press
- Data Source
  KAKENHI-PROJECT-20370063
[Book] タンパク質科学〜構造・物性・機能〜第5章ダイナミクス(2)構造ダイナミクスの理論とシミュレーション2005
- Author(s)
  木寺詔紀, 池口満徳
- Publisher
  化学同人
- Data Source
  KAKENHI-PROJECT-15076209
[Book] あなたにも役立つバイオインフォマティクス2002
- Author(s)
  木寺詔紀(分担執筆)
- Total Pages
  136
- Publisher
  共立出版
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Book] 生物物理学とはなにか-未解決問題への挑戦-2000
- Author(s)
  木寺詔紀(分担執筆)
- Total Pages
  308
- Publisher
  共立出版
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Ionic scattering factors of atoms that compose biological molecules2018
- Author(s)
  Yonekura Koji、Matsuoka Rei、Yamashita Yoshiki、Yamane Tsutomu、Ikeguchi Mitsunori、Kidera Akinori、Maki-Yonekura Saori
- Journal Title
  
  IUCrJ
  
  Volume: 5 Issue: 3 Pages: 348-353
- DOI
  10.1107/s2052252518005237
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-15K06986, KAKENHI-PROJECT-16H04757
[Journal Article] Energetics and Conformational Pathways of Functional Rotation in the Multidrug Transporter AcrB2018
- Author(s)
  Y. Matsunaga, T. Yamane, T. Terada, K. Moritsugu, H. Fujisaki, S. Murakami, M. Ikeguchi, A. Kidera
- Journal Title
  
  eLife
  
  Volume: 7 Pages: 1-19
- DOI
  10.7554/elife.31715
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K00059, KAKENHI-PROJECT-17KT0101, KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-18H02386
[Journal Article] Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex2018
- Author(s)
  K. Moritsugu, H. Nishi, K. Inariyama, M. Kobayashi, and A. Kidera
- Journal Title
  
  Scientific Reports
  
  Volume: 8 Issue: 1 Pages: 16478-16478
- DOI
  10.1038/s41598-018-34605-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16K14714
[Journal Article] Multiscale enhanced sampling of glucokinase: Regulation of the enzymatic reaction via a large scale domain motion2018
- Author(s)
  K. Moritsugu, T. Terada, H. Kokubo, S. Endo, T. Tanaka, and A. Kidera
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 149 Issue: 7 Pages: 072314-072314
- DOI
  10.1063/1.5027444
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16K14714
[Journal Article] Crystal structure of the Ube2K/E2-25K and K48-linked di-ubiquitin complex provides structural insight into the mechanism of K48-specific tri-ubiquitin synthesis2018
- Author(s)
  J. G. Lee, H. S. Youn, J. Y. Kang, S. Y. Park, A. Kidera, Y. J. Yoo, and S. H. Eom
- Journal Title
  
  Biochem. Biophys. Res. Commun.
  
  Volume: 506 Issue: 1 Pages: 102-107
- DOI
  10.1016/j.bbrc.2018.10.067
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-18H02413, KAKENHI-PROJECT-16K14714
[Journal Article] Nature of self-diffusion in two-dimensional fluids2017
- Author(s)
  Choi Bongsik、Han Kyeong Hwan、Kim Changho、Talkner Peter、Kidera Akinori、Lee Eok Kyun
- Journal Title
  
  New Journal of Physics
  
  Volume: 19 Issue: 12 Pages: 123038-123038
- DOI
  10.1088/1367-2630/aa997d
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-16H04780
[Journal Article] Free energy landscape of protein-ligand interactions coupled with protein structural changes2017
- Author(s)
  K. Moritsugu, T. Terada, A. Kidera
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 121 Issue: 4 Pages: 731-740
- DOI
  10.1021/acs.jpcb.6b11696
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-15K18520
[Journal Article] Structure of the Dnmt1 reader module complexed with a unique two-mono-ubiquitin mark on histone H3 reveals the basis for DNA methylation maintenance.2017
- Author(s)
  Ishiyama S, Nishiyama A, Saeki Y, Moritsugu K Morimoto D, Yamaguchi L, Arai N, Matsumura R, Kawakami T, Mishima Y, Hojo H, Shimamura S, Ishikawa F, Tajima S, Tanaka K, Ariyoshi M, Shirakawa M, Ikeguchi M, Kidera A, Suetake I, Arita K, Nakanishi M
- Journal Title
  
  Mol Cell
  
  Volume: 68 Issue: 2 Pages: 350-360
- DOI
  10.1016/j.molcel.2017.09.037
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K14418, KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-16K18503, KAKENHI-PROJECT-26293018, KAKENHI-PLANNED-26119004, KAKENHI-PROJECT-16H04180, KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16H04818, KAKENHI-PROJECT-15K05565, KAKENHI-PROJECT-15K18520, KAKENHI-PROJECT-26000014
[Journal Article] Itinerary profiling to analyze a large number of protein-folding trajectories2016
- Author(s)
  M. Ota, M. Ikeguchi, and A. Kidera
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 13 Issue: 0 Pages: 295-304
- DOI
  10.2142/biophysico.13.0_295
- NAID
  130005284046
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16K14714
[Journal Article] Multiscale enhanced sampling for protein systems: An extension via adiabatic separation2016
- Author(s)
  K. Moritsugu, T. Terada, A. Kidera
- Journal Title
  
  Chem. Phys. Lett.
  
  Volume: 661 Pages: 279-283
- DOI
  10.1016/j.cplett.2016.08.075
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-16H04780, KAKENHI-PROJECT-16K14714, KAKENHI-PROJECT-15K18520
[Journal Article] Multiscale enhanced sampling driven by multiple coarse-grained models2014
- Author(s)
  K. Moritsugu, T. Terada, and A. Kidera
- Journal Title
  
  Chemical Physics Letters
  
  Volume: 616-617 Pages: 20-24
- DOI
  10.1016/j.cplett.2014.10.009
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23247027, KAKENHI-PROJECT-25840060
[Journal Article] Hierarchical description and extensive classification of protein structural changes by Motion Tree2014
- Author(s)
  Koike, R., Ota, M., and Kidera, A.
- Journal Title
  
  J. Mol. Biol
  
  Volume: 426 Issue: 3 Pages: 752-762
- DOI
  10.1016/j.jmb.2013.10.034
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007, KAKENHI-PROJECT-23247027
[Journal Article] Solvent friction effects propagate over the entire protein molecule through low-frequency collective modes2014
- Author(s)
  K. Moritsugu, A. Kidera, and J. Smith
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 118 Issue: 29 Pages: 8559-8565
- DOI
  10.1021/jp503956m
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23247027
[Journal Article] Energy landscape of all-atom protein-protein interactions revealed by multiscale enhanced sampling2014
- Author(s)
  K. Moritsugu, T. Terada, and A. Kidera
- Journal Title
  
  PLOS Comput. Biol.
  
  Volume: 10 Issue: 10 Pages: e1003901-e1003901
- DOI
  10.1371/journal.pcbi.1003901
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23247027, KAKENHI-PROJECT-25840060
[Journal Article] Multiscale enhanced path sampling based on the Onsager-Machlup action: Application to a model polymer2013
- Author(s)
  H. Fujisaki, M. Shiga, K. Moritsugu, A. Kidera
- Journal Title
  
  Journal of Chemical Physics
  
  Volume: 139 Issue: 5 Pages: 0541171-9
- DOI
  10.1063/1.4817209
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22750023, KAKENHI-PROJECT-23247027, KAKENHI-PROJECT-23540454, KAKENHI-PROJECT-23570198, KAKENHI-PROJECT-25840060
[Journal Article] The conserved Arg241-Glu439 salt bridge determines flexibility of the inositol 1,4,5-trisphosphate receptor binding core in the ligand-free state2013
- Author(s)
  Y. Ida and A. Kidera
- Journal Title
  
  Proteins: Structure, Function, and Bioinformatics
  
  Volume: 81 Issue: 10 Pages: 1699-1708
- DOI
  10.1002/prot.24304
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23247027
[Journal Article] Comparative molecular dynamics simulations study of crystal environment effect on protein structure2012
- Author(s)
  T.Terada, A.Kidera
- Journal Title
  
  J.Phys.Chem.B.
  
  Volume: 116(in press) Issue: 23 Pages: 6810-6818
- DOI
  10.1021/jp2125558
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23247027
[Journal Article] Disorder-to-order transition of an intrinsically disordered protein sortase revealed by multiscale enhanced sampling2012
- Author(s)
  K.Moritsugu, T.Terada, A.Kidera
- Journal Title
  
  J.Am.Chm.Soc.
  
  Volume: 134 Issue: 16 Pages: 7094-7101
- DOI
  10.1021/ja3008402
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23247027
[Journal Article] Protein Functional Motions : Basic Concepts and Computational Methodologies2011
- Author(s)
  S. Fuchigami, H. Fujisaki, Y. Matsunaga, A. Kidera
- Journal Title
  
  Adv.Chem.Phys. 145
  
  Pages: 35-82
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Classification and annotation of the relationship between protein structural change and ligand binding2011
- Author(s)
  T.Amemiya, R.Koike, S.Fuchigami, M.Ikeguchi, A.Kidera
- Journal Title
  
  J.Mol.Biol.
  
  Volume: 408 Pages: 568-584
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] rotein Functional Motions : Basic Concepts and Computational Methodologies2011
- Author(s)
  S.Fuchigami, H.Fujisaki, Y.Matsunaga, A.Kidera
- Journal Title
  
  Adv.Chem.Phys.
  
  Volume: 145 Pages: 35-82
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Classification and annotation of the relationship between protein structural change and ligand binding2011
- Author(s)
  T. Amemiya, R. Koike, S. Fuchigami, M. Ikeguchi, A. Kidera
- Journal Title
  
  J.Mol.Biol. 408
  
  Pages: 568-584
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Normal mode analysis of protein dynamics in a non-Eckart frame2010
- Author(s)
  S. Fuchigami, S. Omori, M. Ikeguchi, A. Kidera
- Journal Title
  
  J.Chem.Phys. 132
  
  Pages: 1041091-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Onsager-Machlup action based path sampling and its combination with replica exchange for diffusive and multiple pathways2010
- Author(s)
  H.Fujisaki, M.Shiga, A.Kidera
- Journal Title
  
  J.Chem.Phys. 132
  
  Pages: 1341011-8
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-21107523
[Journal Article] Scalable free energy calculation of proteins via multiscale essential sampling2010
- Author(s)
  K.Moritsugu, T.Terada, A.Kidera
- Journal Title
  
  J.Chem.Phys.
  
  Volume: 133
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-21107523
[Journal Article] Latent dynamics of a protein molecule observed in dihedral angle space2010
- Author(s)
  S. Omori, S. Fuchigami, M. Ikeguchi, A. Kidera
- Journal Title
  
  J.Chem Phys 132
  
  Pages: 1151031-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Latent dynamics of a protein molecule observed in dihedral angle space2010
- Author(s)
  S.Omori, S.Fuchigami, M.Ikeguchi, A.Kidera
- Journal Title
  
  J.Chem.Phys. 132
  
  Pages: 1151031-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis2010
- Author(s)
  K.Nishikata, M.Ikeguchi, A.Kidera
- Journal Title
  
  BIOPHYSICS 6
  
  Pages: 27-36
- NAID
  130000248065
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-21107523
[Journal Article] Normal mode analysis of protein dynamics in a non-Eckart frame2010
- Author(s)
  S.Fuchigami, S.Omori, M.Ikeguchi, A.Kidera
- Journal Title
  
  J.Chem.Phys. 132
  
  Pages: 1041091-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Multivariate Frequency Domain Analysis of Protein Dynamics I : Multitaper Method and Varimax Rotation2009
- Author(s)
  松永康佑、木寺詔紀
- Journal Title
  
  Journal of Chemical Physics 130
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19036028
[Journal Article] Linear response theory in dihedral angle space for protein structural change upon ligand binding2009
- Author(s)
  大森聡, 渕上壮太郎, 池口満徳, 木寺詔紀
- Journal Title
  
  Journal of Computational Chemistry 30(印刷中)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Linear response theory in dihedral angle space for protein structural change upon ligand binding2009
- Author(s)
  S. Omori, S. Fuchigami, M. Ikeguchi, A. Kidera
- Journal Title
  
  J.Comput.Chem. 30
  
  Pages: 2602-2608
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20370063
[Journal Article] Water-mediated interactions between DNA and PhoB DNA-binding/trans activationdomain:NMR-restrained molecular dynamics in explicit water environment2008
- Author(s)
  T.Yamane, H.Okamura, M.Ikeguchi, Y.Nishimura, A.Kidera
- Journal Title
  
  Proteins:Structure, Function, and Bioinformatics 71
  
  Pages: 1970-1983
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain as determined by NMR and restrained molecular dynamics in explicit water environment2008
- Author(s)
  T.Yamane, H.Okamura, M.Ikeguchi, Y.Nishimura and A.Kidera
- Journal Title
  
  Proteins:Structure, Function, and Bioinformatics 71
  
  Pages: 1970-1983
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19036028
[Journal Article] Unfolding athways of Goat α-Lactalbumin as revealed in multiple alignment of molecular dynamics trajectories2007
- Author(s)
  T.Oroguchi, M.Ikeguchi, M.Ota, K.Kuwajima and A.Kidera
- Journal Title
  
  J.Mol.Biol. 371
  
  Pages: 1354-1364
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19036028
[Journal Article] Water transport in aquaporins : Osmotic permeability matrix analysis of molecular dynamics simulations2007
- Author(s)
  M.Hashido, A.Kidera, M.Ikeguchi
- Journal Title
  
  Biophysical Journal 92(In press)
- Data Source
  KAKENHI-PROJECT-17048024
[Journal Article] Unfolding pathways of goat a-lactalbumin as revealed in multiple align ment of molecular dynamics trajectories2007
- Author(s)
  T.Oroguchi, M.Ikeguchi, M.Ota, K.Kuwajima, A.Kidera
- Journal Title
  
  Journal of Molecular Biology 371
  
  Pages: 777-784
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Simulation of charge effects on density maps obtained by high-resolution electron crystallography2007
- Author(s)
  T.Hirai, K.Mitsuoka, A.Kidera and Y.Fujiyoshi
- Journal Title
  
  J.Electron Microscopy 56
  
  Pages: 131-140
- NAID
  10028200273
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19036028
[Journal Article] Nickel binding to NikA : an additional binding site reconciles spectroscopy, calorimetry and crystallography.2007
- Author(s)
  C.Addy, C.Ohara, M.Kawai, F.Kidera, A.Ikeguchi, M.Fuchigami, S.Osawa, M.Shimada, I.Park, S.-Y.Tame, J.R.H., Heddle, J.G.
- Journal Title
  
  Acta Crystallographica Section D : Biological Crystallography D63
  
  Pages: 221-229
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Water transport in aquaporins:osmotic permeability matrix analysis of molecular dynamics simulations2007
- Author(s)
  M.Hashido, A.Kidera, M.Ikeguchi
- Journal Title
  
  Biophysical Journal 93
  
  Pages: 373-385
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Probabilistic alignment detects remote homology in a pair of protein sequences without using additional information of homologous sequences.2007
- Author(s)
  R.Koike, K.Kinoshita, A.Kidera
- Journal Title
  
  Proteins : Structure, Function, and Bioinformatics 66
  
  Pages: 655-663
- Data Source
  KAKENHI-PROJECT-17048024
[Journal Article] 蛋白質構造変化の源はゆらぎ-分子結合に伴う蛋白質の立体構造変化の理論-2006
- Author(s)
  池口満徳, 木寺詔紀
- Journal Title
  
  蛋白質・核酸・酵素 51・3
  
  Pages: 268-273
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] タンパク質構造変化の理論 : 平衡ゆらぎと線形応答理論2006
- Author(s)
  池口満徳, 木寺詔紀
- Journal Title
  
  生物物理 46
  
  Pages: 275-278
- NAID
  110004810275
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Comparative simulations of aquaporin family : AQP1, AQPZ, AQP0 and GlpF2005
- Author(s)
  Hashido, M., Ikeguchi, M., Kidera, A.
- Journal Title
  
  FEBS Letters 579
  
  Pages: 5549-5552
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Protein Structural Change upon Ligand Binding : Linear Response Theory2005
- Author(s)
  M.Ikeguchi, J.Ueno, M.Sato, A.Kidera
- Journal Title
  
  Phys.Rev.Lett. 94
  
  Pages: 78102-78102
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Protonation of the acidic residues in the transmembrane cation-binding sites of the Ca^<2+>-pump2005
- Author(s)
  Sugita, Y., Miyashita, N., Ikeguchi, M., Kidera, A., Toyoshima, C.
- Journal Title
  
  The Journal of American Chemical Society 127
  
  Pages: 6150-6151
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Atomically detailed description of the unfolding of α-lactalbumin by the combined use of experiments and simulations2005
- Author(s)
  Oroguchi, T., Ikeguchi, M., Saeki, K., Kamagata, K., Sawano, Y., Tanokura, M., Kidera, A.Kuwajima
- Journal Title
  
  Journal of Molecular Biology 354
  
  Pages: 164-172
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Protein structural change upon ligand binding : Linear response theory2005
- Author(s)
  M.Ikeguchi, J.Ueno, M.Sato, A.Kidera
- Journal Title
  
  Phys.Rev.Lett. 94
  
  Pages: 78102-78102
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Protein motions represented in moving normal mode coordinates2004
- Author(s)
  Moritsugu, K., Kidera, A.
- Journal Title
  
  J.Phys.Chem. B. 108
  
  Pages: 3890-3898
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Probabilistic Description of Protein Alignments for Sequences and Structures2004
- Author(s)
  R.Koike, K.Kinoshita, A.Kidera
- Journal Title
  
  Proteins : Structure, Function, and Bioinformatics 56
  
  Pages: 157-166
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Protein motions represented in moving normal mode coordinates2004
- Author(s)
  K.Moritsugu, A.Kidera
- Journal Title
  
  J.Phys.Chem.B 108
  
  Pages: 3890-3898
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Probabilistic description of protein alignments for sequences and structures2004
- Author(s)
  Koike, R., Kinoshita, K., Kidera, A.
- Journal Title
  
  Proteins : Structure, Function, and Bioinformatics 56
  
  Pages: 157-166
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  Ota, M., Ikeguchi, M., Kidera, A.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-15076209
[Journal Article] Phylogeny of protein folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  M.Ota, M.Ikeguchi, A.Kidera
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] What is biophysics ; a challenge to unsolved issues2003
- Author(s)
  Kidera, A.
- Journal Title
  
  Kyoritsu Shuppan Co.Ltd
  
  Pages: 308-308
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A method for evaluating multicanonical potential function without iterative refinement : Application to conformational sampling of a globular protein in water2003
- Author(s)
  Terada, T., Matsuo, Y., Kidera, A.
- Journal Title
  
  Journal of Chemical Physics 118 (9)
  
  Pages: 4306-4311
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] An aspect of dynamics in expression of protein function2003
- Author(s)
  Kidera, A., Ikeguchi, M.
- Journal Title
  
  Butsuri Gakkai-shi. 58(4)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] 蛋白質機能発現のダイナミクス的側面2003
- Author(s)
  木寺詔紀, 池口満徳
- Journal Title
  
  物理学会誌 58(4)
- NAID
  10013955382
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Ring and zipper formation is the key to understanding the structural variety in all beta proteins2003
- Author(s)
  Koike, R., Kinoshita, K., Kidera, A.
- Journal Title
  
  FEBS Letters 533 (1-3)
  
  Pages: 9-13
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A method for evaluating multicanonical potential function without iterative refinement : Application to conformational sampling of a globular protem in water2003
- Author(s)
  Terada, T., Matsuo, Y., Kidera, A.
- Journal Title
  
  Journal of Chemical Physics 118(9)
  
  Pages: 4306-4311
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Nonlinear temperature dependence of the crystal structure of Lysozyme : Correlation between coordinate shifts and thermal factors2002
- Author(s)
  Joti, Y., Nakasako, M., Kidera, A., Go, N.
- Journal Title
  
  Acta Crystallographica Section D, Biological Crystallography 58(9)
  
  Pages: 1421-1432
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Nonlinear temperature dependence of the crystal structure of Lysozyme : Correlation between coordinate shifts and thermal factors2002
- Author(s)
  Joti, Y., Nakasako, M.Kidera, A., Go, N.
- Journal Title
  
  Acta Crystallographica Section D, Biological Crystallography 58(9)
  
  Pages: 1421-1432
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Useful bioinformatics in your work2002
- Author(s)
  Kidera. A.
- Journal Title
  
  Kyoritsu Shuppan Co.Ltd.
  
  Pages: 136-136
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A generalized form of the conserved quantity in constant-temperature molecular dynamics2002
- Author(s)
  Terada T., Kidera A.
- Journal Title
  
  J.Chem.Phys. 116 (1)
  
  Pages: 33-41
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Generalized form of the conserved quantity in constant-temperature molecular dynamics2002
- Author(s)
  Terada, T., Kidera, A.
- Journal Title
  
  J.Chem.Phys. 116(1)
  
  Pages: 33-41
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A generalized form of the conserved quantity in constant-temperature molecular dynamics2002
- Author(s)
  Terada T., Kidera A.
- Journal Title
  
  J. Chem. Phys. 116(1)
  
  Pages: 33-41
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Generalized form of the conserved quantity in constant-temperature molecular dynamics2002
- Author(s)
  Terada, T., Kidera, A.
- Journal Title
  
  J. Chem. Phys. 116(1)
  
  Pages: 33-41
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] 立体構造の類似性を知る2001
- Author(s)
  木寺詔紀
- Journal Title
  
  蛋白質核酸酵素 46(15)
  
  Pages: 2198-2204
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Sampling efficiency of molecular dynamics and Monte Carlo Method in protein simulation2001
- Author(s)
  Yamashita, H., Endo, S., Wako, H., Kidera, A.
- Journal Title
  
  Chem. Phys. Lett. 342(3-4)
  
  Pages: 382-386
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Human ABCA1 contains a large amino-terminal extracellular domain homologous to an epitope of Sjogren's syndrome2001
- Author(s)
  Tanaka, A., Ikeda, Y., Abe-Dohmae, S., Arakawa.R., Sadanami, K., Kidera, A., Nakagawa, S., Nagase, T., Aoki, R., Kioka, N., Amachi, T., Yokoyama, S., Ueda, K.
- Journal Title
  
  Biochem.Biophys.Res.Commun. 283 (5)
  
  Pages: 1019-1025
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] タンパク質のダイナミクス-バクテリオロドプシンを中心にして2001
- Author(s)
  木寺詔紀
- Journal Title
  
  化学 H56(9)
  
  Pages: 70-71
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Environmental influence on electron scattering from a molecule2001
- Author(s)
  Yamashita, H., Kidera, A.
- Journal Title
  
  Acta Cryst. Sect A57(pt 5)
  
  Pages: 518-525
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Protein dynamics : focusing on bacteriorhodopsin2001
- Author(s)
  Kidera, A.
- Journal Title
  
  Kagaku H56 (9)
  
  Pages: 70-71
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Dynamical transition of myoglobin in a crystal : comparative studies of X-ray crystallography and Mossbauer spectroscopy2001
- Author(s)
  Chong, S.-H., Joti, Y., Kidera.A., Go, N., Ostermann, A., Gassmann, A., Parak, F.
- Journal Title
  
  European Biophysics J. 30(5)
  
  Pages: 319-329
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Sampling efficiency of molecular dynamics and Monte Carlo Method in protein simulation2001
- Author(s)
  Yamashita, H., Endo, S., Wako, H., Kidera, A.
- Journal Title
  
  Chem.Phys.Lett. 342(3-4)
  
  Pages: 382-386
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Environmental influence on electron scattering from a molecule2001
- Author(s)
  Yamashita, H., Kidera, A.
- Journal Title
  
  Acta Cryst.Sect A57(pt 5)
  
  Pages: 518-525
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Knowing similarity in protein 3D structure2001
- Author(s)
  Kidera.A.
- Journal Title
  
  Tanpakushitsu Kakusan Kouso 46(15)
  
  Pages: 2198-2204
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Presentation] Molecular mechanism of the phosphorylation-driven enhancement of the HP1aCD/H3K9me complex formation revealed by replica-exchange molecular dynamics simulation2018
- Author(s)
  Satoshi Omori, Kei Moritsugu, Yoshifumi Nishimura, Akinori Kidera
- Organizer
  The 62nd Biophysical Society Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Molecular mechanism of the phosphorylation-driven enhancement of the HP1αCD/H3K9me complex formation revealed by replica-exchange molecular dynamics simulation2018
- Author(s)
  Satoshi Omori, Kei Moritsugu, Yoshifumi Nishimura, Akinori Kidera
- Organizer
  Satoshi Omori, Kei Moritsugu, Yoshifumi Nishimura, Akinori Kidera
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] 大規模シミュレーションによるグルコキナーゼ活性化機構の解析2018
- Author(s)
  森次圭, 寺田透, 木寺詔紀
- Organizer
  日本物理学会第73回年次大会
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] 大規模シミュレーションによるグルコキナーゼ活性化機構の解析2018
- Author(s)
  森次圭, 寺田透, 木寺詔紀
- Organizer
  日本物理学会第73回年次大会
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] プロテインキナーゼの立体構造データベース解析2017
- Author(s)
  森次圭、西野圭彦、木寺詔紀
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Multiscale enhanced sampling for glucokinase2017
- Author(s)
  Kei Moritsugu, Tohru Terada, Akinori Kidera
- Organizer
  Biophysical Society Thematic Meeting: Conformational Ensembles from Experimental Data and Computer Simulations
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Comprehensive database analysis of protein kinase structures2017
- Author(s)
  Kei Moritsugu, Yoshihiko Nishino, Akinori Kidera
- Organizer
  CBI学会2017年大会
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Comprehensive database analysis of protein kinase structures2017
- Author(s)
  Kei Moritsugu, Yoshihiko Nishino, Akinori Kidera
- Organizer
  CBI学会2017年大会
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] プロテインキナーゼの立体構造データベース解析2017
- Author(s)
  森次圭、西野圭彦、木寺詔紀
- Organizer
  第17回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Multiscale enhanced sampling for glucokinase2017
- Author(s)
  Kei Moritsugu, Tohru Terada, Akinori Kidera
- Organizer
  Biophysical Society Thematic Meeting: Conformational Ensembles from Experimental Data and Computer Simulations
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Structural basis for activation of EGFR kinase domain at atomistic resolution revealed by multiscale enhanced sampling2016
- Author(s)
  K. Moritsugu, T. Terada, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-26
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Large-scale configurational sampling of K63-linked di-ubiquitin complexed with TAB22016
- Author(s)
  K. Inariyama, H. Nishi, K. Moritsugu, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-27
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Structual dynamics of MEK1 activation through phosphorylation2016
- Author(s)
  M. Ando, K. Moritsugu, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-26
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Structual dynamics of MEK1 activation through phosphorylation2016
- Author(s)
  M. Ando, K. Moritsugu, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-26
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Structural basis for activation of EGFR kinase domain at atomistic resolution revealed by multiscale enhanced sampling2016
- Author(s)
  K. Moritsugu, T. Terada, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-26
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Mechanism of the complex formation of HP1αCD/histone H3 tail revealed by the replica-exchange molecular dynamics simulations2016
- Author(s)
  S. Omori, N. Hashiguchi, K. Moritsugu, Y. Nishimura, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Large-scale configurational sampling of K63-linked di-ubiquitin complexed with TAB22016
- Author(s)
  K. Inariyama, H. Nishi, K. Moritsugu, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-27
- Data Source
  KAKENHI-PROJECT-16K14714
[Presentation] Mechanism of the complex formation of HP1αCD/histone H3 tail revealed by the replica-exchange molecular dynamics simulations2016
- Author(s)
  S. Omori, N. Hashiguchi, K. Moritsugu, Y. Nishimura, A. Kidera
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場(茨城県つくば市）
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-16H04780
[Presentation] Structural ensemble of protein encounter complex revealed by Multiscale Essential Sampling2013
- Author(s)
  Satoshi Omori, Kei Moritsugu, Akinori Kidera
- Organizer
  第51回日本生物物理学会年会
- Place of Presentation
  京都国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Motion Tree analysis of the multidrug transporter AcrB2013
- Author(s)
  Tsutomu Yamane, Ryotaro Koike, Motonori Oota, Satoshi Murakami, Akinori Kidera, Mitsunori Ikeguchi
- Organizer
  第51回日本生物物理学会年会
- Place of Presentation
  京都国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] 全原子モデル- 粗視化モデル連成法を用いた蛋白質複合体形成過程の分子シミュレーション2013
- Author(s)
  大森聡、森次圭、木寺詔紀
- Organizer
  第12回日本蛋白質科学会年会
- Place of Presentation
  とりぎん文化会館
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Hierarchical description and extensive classification of protein structural changes by Motion Tree2013
- Author(s)
  Ryotaro Koike, Motonori Ota, Akinori Kidera
- Organizer
  第51回日本生物物理学会年会
- Place of Presentation
  京都国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] The effects of substrate binding in ABC transporter: A simulation study2013
- Author(s)
  Kouki Yamada, Hiroaki Kato, Akinori Kidera
- Organizer
  第51回日本生物物理学会年会
- Place of Presentation
  京都国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation2012
- Author(s)
  Akinori Kidera
- Organizer
  日本生物物理学会第50回年会
- Place of Presentation
  名古屋大学
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] HAMPドメインの分子モデルを結合したSRII-HtrII複合体の比較シミュレーションにより示唆された基底状態とM中間体の差異2012
- Author(s)
  木寺詔紀
- Organizer
  日本蛋白質科学会第12回年会
- Place of Presentation
  名古屋国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Differences between the ground state and the Mintermediateof Sensory Rhodopsin II-Transducer complex revealed by comparative simulations2012
- Author(s)
  Akinori Kidera
- Organizer
  日本生物物理学会第50回年会
- Place of Presentation
  名古屋大学
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] 結合型ジユビキチンのマイクロ秒スケールの分子動力学シミュレーション2012
- Author(s)
  木寺詔紀
- Organizer
  日本蛋白質科学会第12回年会
- Place of Presentation
  名古屋国際会議場
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Multiscale enhanced sampling simulation for protein-protein interactions2011
- Author(s)
  Kei Moritsugu, Akinori Kidera
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  兵庫県立大学
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] Multiscale enhanced sampling simulation for intrinsic disorder protein, sortase A2010
- Author(s)
  Kei Moritsugu, Akinori Kidera
- Organizer
  日本生物物理学会年会
- Place of Presentation
  東北大学
- Year and Date
  2010-09-21
- Data Source
  KAKENHI-PUBLICLY-21107523
[Presentation] Database analysis of protein structural changes upon ligand binding2010
- Author(s)
  雨宮崇之, 小池亮太郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第48回日本生物物理学会年会
- Place of Presentation
  仙台
- Year and Date
  2010-09-20
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] Database analysis of protein structural changes upon ligand binding2010
- Author(s)
  T.Amemiya, R.Koike, S.Fuchigami, M.Ikeguchi, A.Kidera
- Organizer
  日本生物物理学会年会
- Place of Presentation
  東北大学
- Year and Date
  2010-09-20
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] Compensating dynamics of a protein molecule observed in dihedral angle space2010
- Author(s)
  大森聡, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第48回日本生物物理学会年会
- Place of Presentation
  仙台
- Year and Date
  2010-09-22
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 球状蛋白質構造ゆらぎの2面角系主成分分析2009
- Author(s)
  大森聡、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本
- Year and Date
  2009-05-20
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 低分子リガンド相互作用に関わるタンパク質立体構造変化のデータベース解析2009
- Author(s)
  雨宮崇之, 小池亮太郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本全日空ホテルニュースカイ
- Year and Date
  2009-05-22
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] Molecular dynamics analysis of a HAMP domain : A four-helix bundle structure satisfies the data of electron paramagnetic resonance2009
- Author(s)
  K Nishikata, S Fuchigami, M Ikeguchi, A Kidera
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  アスティ徳島
- Year and Date
  2009-10-30
- Data Source
  KAKENHI-PUBLICLY-21107523
[Presentation] Independent component analysis of equilibrium fluctuations in proteins2009
- Author(s)
  Y Naritomi, S Fuchigami, M Ikeguchi, A Kidera
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  アスティ徳島
- Year and Date
  2009-10-31
- Data Source
  KAKENHI-PUBLICLY-21107523
[Presentation] 球状蛋白質構造ゆらぎの2面角系主成分分析2009
- Author(s)
  大森聡, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本全日空ホテルニュースカイ
- Year and Date
  2009-05-20
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] Principal component analysis of proteins in dihedral angle space2009
- Author(s)
  大森聡, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第47回日本生物物理学会年会
- Place of Presentation
  徳島
- Year and Date
  2009-10-30
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 低分子リガンド相互作用に関わるタンパク質立体構造変化のデータベース解析2009
- Author(s)
  雨宮崇之、小池亮太郎、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本
- Year and Date
  2009-05-22
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] Water-mediated interactions between DNA and the PhoB DNA binding/transactivation domain2008
- Author(s)
  T.Yaname, H.Okamura, M.Ikeguchi, Y.Nishimura, A.Kidera
- Organizer
  52st Annual Meeting of Biophysical Society
- Place of Presentation
  Long Beach,California
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] IP3レセプター・リガンド結合コアとその変異体のIP3非結合時分子動力学計算2008
- Author(s)
  井田洋一、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場、福岡
- Year and Date
  2008-12-03
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] 蛋白質構造ゆらぎの2面角系主成分分析2008
- Author(s)
  大森聡、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  東京
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] センサリーロドプシンII/トランスデューサー複合体の分子動力学研究2008
- Author(s)
  西方公郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀、東京
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] Motion Tree法による蛋白質構造変化の階層的記述2008
- Author(s)
  小池亮太郎, 太田元規, 木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場、福岡
- Year and Date
  2008-12-04
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] センサリーロドプシンII/トランスデューサー複合体のHAMPドメインのモデル構造 : 分子動力学計算2008
- Author(s)
  西方公郎、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場、福岡
- Year and Date
  2008-12-04
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] タンパク質の多量体形成で観察される構造変化2008
- Author(s)
  平山裕之、雨宮崇之、小池亮太郎、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡
- Year and Date
  2008-12-05
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 低分子リガンド結合に関わるタンパク質構造変化のデータベース解析:結晶場の影響2008
- Author(s)
  雨宮崇之、小池亮太郎、渕上壮太郎、池口満徳、木寺詔紀
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  東京
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] 低分子リガンド結合に関わるタンパク質構造変化のデータペース解析 : 結晶場の影響2008
- Author(s)
  雨宮崇之, 小池亮太郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第8回日本蛋白質科学会年会
- Place of Presentation
  タワーホール船堀、東京
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] タンパク質立体構造変化における経路の多様性とメカニズム:アデニル酸キナーゼの場合2007
- Author(s)
  渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本蛋白質科学会第7回年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] センサリーロドプシンIIトランスデューサーHAMPドメイン分子動力学研究2007
- Author(s)
  西方公郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本蛋白質科学会第7回年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] リガンド結合による蛋白質の構造変化の動的過程:時間依存の摂動による線形応答理論2007
- Author(s)
  成富佑輔, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] 低分子リガンド結合に伴う構造変化のデータベース解析2007
- Author(s)
  雨宮崇之, 小池亮太郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本蛋白質科学会第7回年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] IP3レセプター・リガンド結合コアのIP3非結合時分子動力学シミュレーション2007
- Author(s)
  井田洋一, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] センサリーロドプシンIIトランスデューサーHAMPドメインの分子動力学研究2007
- Author(s)
  西方公郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  仙台国際センター
- Year and Date
  2007-05-24
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] センサリーロドプシンIIトランスデューサーHAMPドメインの分子動力学研究2007
- Author(s)
  西方公郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  パシフイコ横浜
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] センソリーロドプシンIIトランスデューサーHAMPドメインの分子動力学研究2007
- Author(s)
  西方公郎, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] F型ATP合成酵素cリングの空孔に存在するリン脂質は何分子か?:分子動力学シミュレーションによる推定2007
- Author(s)
  渕上壮太郎, 中島恭子, 池口満徳, 木寺詔紀
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] IP3レセプター・リガンド結合コアのIP3非結合時分子動力学シミュレーション2007
- Author(s)
  井田洋一, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  パシフイコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19036028
[Presentation] PhoBのDNA結合ドメインのダイナミクス解析2007
- Author(s)
  山根努, 岡村英保, 池口満徳, 木寺詔紀, 西村善文
- Organizer
  日本蛋白質科学会第7回年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] 線形応答理論による蛋白質構造変化の記述:内部座標系2007
- Author(s)
  大森聡, 渕上壮太郎, 池口満徳, 木寺詔紀
- Organizer
  日本蛋白質科学会第7回年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-15076209
[Presentation] Ligand binding process at atomistic resolution revealed by multiscale enhanced sampling
- Author(s)
  Kei Moritsugu, Tohru Terada, Akinori Kidera
- Organizer
  第52回日本生物物理学会年会
- Place of Presentation
  札幌コンベンションセンター
- Year and Date
  2014-09-25 – 2014-09-27
- Data Source
  KAKENHI-PROJECT-23247027
[Presentation] 全原子モデル-粗視化モデルの連成シミュレーションによる蛋白質複合体形成過程の解析
- Author(s)
  大森聡、森次圭、木寺詔紀
- Organizer
  第14回日本蛋白質科学会年会
- Place of Presentation
  ワークピア横浜
- Year and Date
  2014-06-25 – 2014-06-27
- Data Source
  KAKENHI-PROJECT-23247027

1. IKEGUCHI Mitsunori (60261955)

# of Collaborated Projects: 5 results

# of Collaborated Products: 33 results
2. KITAO Akio (30252422)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
3. GO Mitiko (70037290)

# of Collaborated Projects: 4 results

# of Collaborated Products: 3 results
4. NAKAMURA Haruki (80134485)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
5. GO Nobuhiro (50011549)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
6. MITAKU Shigeki (10107542)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
7. NISHIKAWA Ken (10093288)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
8. UMEYAMA Hideaki (20050619)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
9. 渕上壮太郎 (00381468)

# of Collaborated Projects: 3 results

# of Collaborated Products: 15 results
10. KUWAJIMA Kunihiro (70091444)

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11. MITSUOKA Kaoru (60301230)

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12. FUJIYOSHI Yoshinori (80142298)

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13. YURA Kei (50252226)

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14. WAKO Hiroshi (60158607)

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15. YUTANI Katsuhide (90089889)

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16. 後藤祐児 (40153770)

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17. 野口俊之 (90172775)

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18. 熊谷泉 (10161689)

# of Collaborated Projects: 2 results

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19. Moritsugu Kei

# of Collaborated Projects: 2 results

# of Collaborated Products: 23 results
20. OTA Motonori (40290895)

# of Collaborated Projects: 1 results

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21. YOMO Tetsuya (00222399)

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22. ISHIMORI Koichiro (20192487)

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23. KATAOKA Mikio (30150254)

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24. KUSHIDA Takashi (00013516)

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25. YAMAGATA Yuriko (40183678)

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26. HIRAI Teruhisa (10450412)

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27. KINOSHITA Kengo (60332293)

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28. NAKAJIMA Nobuyuki (60324852)

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29. TAKAHASHI Kenichi (20322737)

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30. SHIRAI Tsuyoshi (00262890)

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31. SODA Kunitsugu (10011686)

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32. 藤本和 (50159125)

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33. 新井宗仁 (90302801)

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34. 平田文男 (90218785)

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35. 豊島近 (70172210)

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37. 津田岳夫 (10345233)

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38. 鈴木裕 (50183421)

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39. 森島績 (50026093)

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40. 諏訪牧子 (30242241)

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41. 大島泰郎 (60167301)

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42. 阿久津秀雄 (60029965)

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44. 中川敦史 (20188890)

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45. KIDOKORO Shunichi

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46. PARAK Fritz

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47. ISHIDA Masahisa

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48. Huang Bo

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49. Ando Minami

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50. Nishino Yoshihiko

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51. FRITZ Parak

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52. FUJISAKI Hiroshi

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53. Matsunaga Yasuhiro

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54. 志賀基之

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55. 末武勲

# of Collaborated Projects: 0 results

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56. 川上徹

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# of Collaborated Products: 1 results

Kidera Akinori 木寺 詔紀

KIDERA Akinori 木寺 詔紀

木寺 紹紀 キデラ アキノリ

木寺 詔記 キデラ アキノリ

Research Projects

Research Products

Co-Researchers

Mechanism of signal transduction regulated by the interactions to cell membranePrincipal Investigator

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Enhanced structural sampling for allosteric drug designPrincipal Investigator

Principal Investigator

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The role of the encounter complexes studied by molecular simulations of the protein complex formation processes.Principal Investigator

Principal Investigator

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タンパク質側鎖の平衡揺らぎと基質結合に伴う応答的運動Principal Investigator

Principal Investigator

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Research Institution

Identification of the relationship between protein structural changes and ligand binding on the basis of 3D protein structuresPrincipal Investigator

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分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究Principal Investigator

Principal Investigator

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Research Institution

分子シミュレーションによる膜タンパク質の機能的ダイナミクスの研究Principal Investigator

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Research Institution

Principal Investigator

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Principal Investigator

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Study of Vibrational Energy Transfer in ProteinsPrincipal Investigator

Principal Investigator

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Principal Investigator

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Principal Investigator

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Prediction of structure and function of protein complexesPrincipal Investigator

Principal Investigator

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Review Section

Research Institution

Kidera Akinori 木寺詔紀

KIDERA Akinori 木寺詔紀

木寺紹紀キデラアキノリ

木寺詔記キデラアキノリ

[Book] 岩波講座　計算科学　4巻　計算と生命2012