Ogura Yoshitoshi 小椋義俊

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OGURA Yoshitoshi 小椋義俊

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Researcher Number	40363585
Other IDs
External Links
Affiliation (Current)	2024: 久留米大学, 医学部, 教授
Affiliation (based on the past Project Information) *help	2020 – 2024: 久留米大学, 医学部, 教授 2021: 九州大学, 大学院医学研究院, 准教授 2016 – 2019: 九州大学, 医学研究院, 准教授 2018: 九州大学, 大学院医学研究院, 准教授 2014 – 2016: 九州大学, 医学(系)研究科(研究院), 准教授 … More 2015: 九州大学, 大学院医学研究院, 准教授 2014: 宮崎大学, フロンティア科学総合実験センター, 助教 2007 – 2014: 宮崎大学, フロンティア科学実験総合センター, 助教 2007: UNIERSITY OF MIYAZAKI, FRONTIER SCIENCE RESEARCHCENTER, ASSISTANT PROFESSOR 2006: フロンティア科学実験総合センター, 助手 2004 – 2006: University of Miyazaki, Frontier Research Center, Joshu, フロンティア科学実験総合センター, 助手 2003: 宮崎大学, 医学部・フロンティア科学実験総合センター, 助教授 Less
Review Section/Research Field	Principal Investigator Bacteriology (including mycology) / Bacteriology (including Mycology) / Biological Sciences / Basic Section 49050:Bacteriology-related / Medium-sized Section 49:Pathology, infection/immunology, and related fields Except Principal Investigator Basic Section 63010:Environmental dynamic analysis-related / Applied microbiology / Legal medicine / 基礎ゲノム科学 / Biological Sciences … More / Basic Section 42010:Animal production science-related / Basic Section 64010:Environmental load and risk assessment-related / Basic Section 52050:Embryonic medicine and pediatrics-related / Basic Section 49050:Bacteriology-related / Basic Section 59020:Sports sciences-related / Basic Section 54030:Infectious disease medicine-related / Morphological basic dentistry / Environmental agriculture(including landscape science) Less
Keywords	Principal Investigator ゲノム / 腸管出血性大腸菌 / 志賀毒素 / 進化 / 病原性 / ファージ / 大腸菌 / ３型分泌装置 / 原生生物 / 結核菌 … More / O157 / 病原性大腸菌 / 集団感染 / 病原因子 / 疫学 / 下痢症 / 腸管病原性大腸菌 / 志賀毒素産生性大腸菌 / 共進化 / non-O157 EHEC / 新型シーケンサー / 遺伝子 / 毒素 / 微生物 / 感染症 / tRNA / 翻訳 / 病原遺伝子 / 細菌 … More Except Principal Investigator ゲノム / 病原性 / メタゲノム / 回復メカニズム / 土壌生態系 / 細菌群集 / 病原細菌 / 腸内細菌 / エピゲノム / GWAS / リシーケンシング / 次世代DNAシーケンサー / 撹乱 / 腸内細菌叢 / ゲノム解析 / ビフィズス菌 / INSeq法 / 珪藻 / 水棲細菌 / プランクトン / 水棲微生物 / 溺死 / 法医学 / 進化 / 細菌 / 微生物 / バクテリオファージ / III型分泌系 / 腸炎ビブリオ / 多様性 / 病原性大腸菌 / 牛 / 発現・汚染機構 / 検出定量 / 薬剤耐性大腸菌 / 多剤耐性 / 河川水 / 病原遺伝子 / 薬剤耐性病原大腸菌 / 汚染源 / 全ゲノム解析 / 拡散分布 / 薬剤耐性 / 病原大腸菌 / 攪乱 / ＰA抗体 / マクロライド耐性 / 薬剤感受性 / マイコプラズマ / 生態攪乱 / 山焼き / 生態回復 / 生態撹乱 / 細菌機能解析 / 細菌群集解析 / 腸管出血性大腸菌 / ファージ / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / 新規ゲノム配列決定 / サルコぺニア / マイオスタチン / 腸粘膜関連細菌叢 / 腸筋相関 / マイオカイン / 運動 / 腸管バリア / 短鎖脂肪酸 / 肥満 / 糞便移植 / 大腸腫瘍 / 接合伝達 / 薬剤耐性プラスミド / カルバペネム腸内細菌科細菌 / 薬剤耐性細菌 / 生育阻害法 / カルバペネム耐性腸内細菌科細菌 / 抗菌薬 / ファージ療法 / 多剤耐性菌 / 必須遺伝子 / 殺菌法 / 薬剤耐性遺伝子 / 性線毛 / 感染制御法 / 抗菌法 / 遺伝子発現制御法 / アンチセンスRNA / ファージセラピー / 薬剤耐性菌 / A群レンサ球菌 / トランスクリプトーム / メチローム / 溶連菌 / 多様化 / 細菌ゲノム / 比較ゲノム / 応用微生物 / 腸管定着 / R-IVET / 腸内活動 / Pyrosequencing / 454-pyrosequencing / 藍藻（シアノバクテリア） / 次世代DNAシーケンサ / インフォームドコンセント / 個人ゲノム / de novo配列決定 / ChIP-seq / RNA-seq / 土壌 / 群集構造解析 / 微生物群集構造 / 森林土壌 / 微生物生態 / Unculturable bacteria / Metagenome / Genome / Gut microbiota / Genetics / 難培養性 / 難培養性細菌 / 遺伝学 / Type III secretion system / two component regulatory system / gene regulatory network / Genomic diversity / pathogenicity / Vibrio parahaemolyticus / Clostridium perfringens / pathogenic Escherichia coli / PCR / 2成分制御系 / マイクロアレイ / 二成分制御系 / 発現制御ネットワーク / ゲノム多様性 / 賜炎ビブリオ / ウェルシュ菌 / ランダム変異導入 / 定着因子 / プロモーター / 腸内生存 / Bifidobacterium longum / 転移因子 / トランスポゾン変異導入 / 藍藻 / 感染症 / 常在菌 / O抗原合成遺伝子 / 発現制御 / 腸内常在菌叢 / 疫学ツールの開発 / 腸内常在菌 Less

The research on immune system and mechanism of drug resistance for macrolide agents among Mycoplasma pneumoniae
- Principal Investigator
  
  大石智洋
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 52050:Embryonic medicine and pediatrics-related
- Research Institution
  Kawasaki Medical School
森林火災による撹乱後の回復期の土壌機能を担う細菌群集の構造と寄与の解明
- Principal Investigator
  
  笠原康裕
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Hokkaido University
Elucidation of the spatial and ecological characteristics of human pathogenic bacteria coexisting in the bovine gastrointestinal tract and development of new control methods
- Principal Investigator
  
  井口純
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 42010:Animal production science-related
- Research Institution
  University of Miyazaki
宿主細菌の遺伝子発現を制御する新規プロファージ遺伝子の解析
- Principal Investigator
  
  岩瀬忠行
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Jikei University School of Medicine
火熱撹乱による森林土壌細菌生態系の回復メカニズムの解明
- Principal Investigator
  
  笠原康裕
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Hokkaido University
表流水からの簡便・迅速な薬剤耐性病原大腸菌の超高効率濃縮回収とゲノム履歴分析
- Principal Investigator
  
  鈴木祥広
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 64010:Environmental load and risk assessment-related
- Research Institution
  University of Miyazaki
Identification of novel pathotypes of diarrheal Escherichia coli by analyzing clinical isolates in which representative virulence genes for known pathotypes were not detected.Principal Investigator
- Principal Investigator
  
  Ogura Yoshitoshi
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 49:Pathology, infection/immunology, and related fields
- Research Institution
  Kurume University
Analysis of emerging process of enterohemorrhagic escherichia coliPrincipal Investigator
- Principal Investigator
  
  Yoshitoshi Ogura
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Kurume University
Gut-muscle-microbiota axis in colon tumor in high-fat diet induced obesity
- Principal Investigator
  
  Hiroshi Matsumoto
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 59020:Sports sciences-related
- Research Institution
  Kawasaki Medical School
Development of a novel antimicrobial method targeting conjugation systems of drug-resistant plasmid
- Principal Investigator
  
  Kawano Mitsuoki
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 54030:Infectious disease medicine-related
- Research Institution
  Chugoku Gakuen University
  Kawasaki Medical School
Emerging process of Enterohemorrhagic Escherichia coli revealed by a large-scale genome analysisPrincipal Investigator
- Principal Investigator
  
  Yoshitoshi Ogura
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Kyushu University
Identification and functional analysis of genes important for the activity of bifidobacteria in the intestine harboring intestinal microbiota
- Principal Investigator
  
  Fukiya Satoru
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Hokkaido University
Elucidation of genomic diversification in Group A Streptococci based on GWAS and epigenome
- Principal Investigator
  
  MARUYAMA FUMITO
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Morphological basic dentistry
- Research Institution
  Kyoto University
mechanism of diversification of shiga toxin-encoding phage, from the ecological aspectPrincipal Investigator
- Principal Investigator
  
  Yoshitoshi Ogura
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Kyushu University
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Comprehensive analysis of maintenance mechanism of forest soil microbial ecosystem by thermal disturbance
- Principal Investigator
  
  Kasahara Yasuhiro
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Environmental agriculture(including landscape science)
- Research Institution
  Hokkaido University
新型シーケンサーを用いた細菌における自然環境でのゲノムアダプテーション解析法Principal Investigator
- Principal Investigator
  
  小椋義俊
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  University of Miyazaki
Exploration of bifidobacterial genes involved in the intestinal survival through a dynamics analysis of random transposon mutants of Bifidobacterium longum
- Principal Investigator
  
  FUKIYA Satoru
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Applied microbiology
- Research Institution
  Hokkaido University
Identification of high risk lineages that contain Stx2 high producing strains in enterohaemorrhagic Escherichia coliPrincipal Investigator
- Principal Investigator
  
  Yoshitoshi Ogura
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Kyushu University
  University of Miyazaki
Detection of diverse aquatic microbes in lungs and blood of drowning and non-drowning victims by a metagenomic approach
- Principal Investigator
  
  YUKAWA Nobuhiro
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Legal medicine
- Research Institution
  University of Miyazaki
新型シーケンサーを用いた細菌における自然環境でのゲノムアダプテーション解析法Principal Investigator
- Principal Investigator
  
  小椋義俊
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  University of Miyazaki
Analysis of shiga-toxin resistance systemin enterohemorrhagic E. coliPrincipal Investigator
- Principal Investigator
  
  OGURA Yoshitoshi
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including Mycology)
- Research Institution
  University of Miyazaki
Detection of diverse aquatic microbes in blood and organs of drowning victims by a metagenomic approach
- Principal Investigator
  
  KAKIZAKI Eiji
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Legal medicine
- Research Institution
  University of Miyazaki
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Escherichia coli pan-genome analysis using next-generation DNA sequencing technologies
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  University of Miyazaki
Identification of genomic region that confers Stx2 producibility of Stx2phages in Escherichia coli O157.Principal Investigator
- Principal Investigator
  
  OGURA Yoshitoshi
- Project Period (FY)
  2008 – 2009
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including Mycology)
- Research Institution
  University of Miyazaki
Genome analysis of bacteria inhabiting the mucosal surface of intestine
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  University of Miyazaki
Basic and applied genomics of enterohemorrhagic Escherichia coli and related enteropathogens
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  University of Miyazaki
腸管出血性大腸菌O157の病原遺伝子群の発現における外来性tRNAの役割Principal Investigator
- Principal Investigator
  
  小椋義俊
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including Mycology)
- Research Institution
  University of Miyazaki
Comprehensive analyses of bacterial pathogenesis based on the genome information
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2002 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  University of Miyazaki
  宮崎医科大学

[Book] 化学療法の領域次世代シーケンサが可能にした感染学の新しい展開2017
- Author(s)
  小椋義俊
- Pages
  11-11
- Total Pages
  216
- Publisher
  医薬ジャーナル社
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] 第4章新規ゲノム配列決定編2012
- Author(s)
  小椋義俊, 林哲也
- Total Pages
  252
- Publisher
  細菌ゲノム. 細胞工学別冊次世代シークエンサー目的別アドバンストメソッド, 監修菅野純夫/鈴木穣
- Data Source
  KAKENHI-PROJECT-23790478
[Book] 次世代シークエンサー　目的別アドバンスドメソッド2012
- Author(s)
  小椋義俊,　林哲也
- Total Pages
  252
- Publisher
  秀潤社
- Data Source
  KAKENHI-PUBLICLY-23125511
[Book] 細胞工学別冊　次世代シークエンサー　目的別アドバンスドメソッド2012
- Author(s)
  小椋義俊,　林哲也
- Total Pages
  252
- Publisher
  秀潤社
- Data Source
  KAKENHI-PROJECT-23790478
[Book] 病原菌と常在菌の境界(第6 章腸内共生系の破綻と疾病)2011
- Author(s)
  小椋義俊, 林哲也
- Total Pages
  292
- Publisher
  丸善出版
- Data Source
  KAKENHI-PROJECT-23790478
[Book] 腸内共生系のバイオサイエンス2011
- Author(s)
  小椋義俊, 林哲也
- Total Pages
  292
- Publisher
  丸善出版
- Data Source
  KAKENHI-PUBLICLY-23125511
[Book] Evolutionary Biology of Bacterial and Fungal Pathogens.(Edited by Baquero, F. et al., Genomic view on the evolution of enterohemorrhagic Escherichia coli, Chapter 34)2007
- Author(s)
  Hayashi, T., Ooka, T., Ogura, Y., Asadulghani, Md
- Publisher
  ASM Press.
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Global population structure, genomic diversity and carbohydrate fermentation characteristics of clonal complex 119 (CC119), an understudied Shiga toxin-producing E. coli (STEC) lineage including O165:H25 and O172:H252023
- Author(s)
  Nakamura Keiji、Seto Kazuko、Lee Kenichi、Ooka Tadasuke、Gotoh Yasuhiro、Taniguchi Itsuki、Ogura Yoshitoshi、Mainil Jacques Georges、Pi?rard Denis、Harada Tetsuya、Etoh Yoshiki、Ueda Saori、Hamasaki Mitsuhiro、Isobe Junko、Kimata Keiko、Narimatsu Hiroshi、Yatsuyanagi Jun、Ohnishi Makoto、Iyoda Sunao、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 9 Issue: 3 Pages: 000959-000959
- DOI
  10.1099/mgen.0.000959
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K07506, KAKENHI-PROJECT-21K07006, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Nationwide analysis of antimicrobial resistance in pathogenic Escherichia coli strains isolated from diseased swine over 29 years in Japan2023
- Author(s)
  Kusumoto Masahiro、Tamamura-Andoh Yukino、Hikoda-Kogiku Yuna、Magome Asami、Okuhama Erina、Sato Keisuke、Mizuno Yoshino、Arai Nobuo、Watanabe-Yanai Ayako、Iwata Taketoshi、Ogura Yoshitoshi、Gotoh Yasuhiro、Nakamura Keiji、Hayashi Tetsuya、Akiba Masato
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 14 Pages: 1107566-1107566
- DOI
  10.3389/fmicb.2023.1107566
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Helicobacter kumamotonensis sp. nov., isolated from human clinical specimens2023
- Author(s)
  Kawamura Yoshiaki、Fujimoto Yuko、Kutsuna Ryo、Tomida Junko、Yamamoto Kei-ichi、Miyoshi-Akiyama Tohru、Okuno Miki、Ogura Yoshitoshi、Matsuoka Masao、Kawaguchi Tatusya、Tsutsuki Hiroyasu、Sawa Tomohiro
- Journal Title
  
  International Journal of Systematic and Evolutionary Microbiology
  
  Volume: 73 Issue: 3 Pages: 1-7
- DOI
  10.1099/ijsem.0.005732
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21K07014, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Alteration of a Shiga toxin-encoding phage associated with a change in toxin production level and disease severity in Escherichia coli2023
- Author(s)
  Miyata Tatsuya、Taniguchi Itsuki、Nakamura Keiji、Gotoh Yasuhiro、Yoshimura Dai、Itoh Takehiko、Hirai Shinichiro、Yokoyama Eiji、Ohnishi Makoto、Iyoda Sunao、Ogura Yoshitoshi、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 9 Issue: 2
- DOI
  10.1099/mgen.0.000935
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K07506, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Genomic characterization of endemic diarrheagenic Escherichia coli and Escherichia albertii from infants with diarrhea in Vietnam2023
- Author(s)
  Iguchi Atsushi, Takemura Taichiro, Ogura Yoshitoshi.....Hanako Iwashita.....Yamashiro Tetsu.
- Journal Title
  
  PLOS Neglected Tropical Diseases
  
  Volume: 17 Issue: 4 Pages: e0011259-e0011259
- DOI
  10.1371/journal.pntd.0011259
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K13800, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Antibiotic-resistant Escherichia coli isolated from dairy cows and their surrounding environment on a livestock farm practicing prudent antimicrobial use2022
- Author(s)
  Suzuki Yoshihiro、Hiroki Hayate、Xie Hui、Nishiyama Masateru、Sakamoto Shinsuke H.、Uemura Ryoko、Nukazawa Kei、Ogura Yoshitoshi、Watanabe Toru、Kobayashi Ikuo
- Journal Title
  
  International Journal of Hygiene and Environmental Health
  
  Volume: 240 Pages: 113930-113930
- DOI
  10.1016/j.ijheh.2022.113930
- NAID
  120007190922
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] A Salmonella enterica Serovar Oranienburg Clone Caused a Cluster of Bacteremia Cases in Persons With No Recognizable Underlying Diseases in Japan2022
- Author(s)
 Ooka Tadasuke、Gotoh Yasuhiro、Hatanaka Shigeki、... Ogura Yoshitoshi、et al.
- Journal Title
 
 Open Forum Infectious Diseases
 
 Volume: 10 Issue: 1
- DOI
 10.1093/ofid/ofac695
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-17K09236, KAKENHI-PROJECT-20K08161, KAKENHI-PROJECT-20K21527
[Journal Article] Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/‘magdeburgensis’ complex2022
- Author(s)
  Gotoh Yasuhiro、Atsuta Yuya、Taniguchi Takako、Nishida Ruriko、Nakamura Keiji、Ogura Yoshitoshi、Misawa Naoaki、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 8 Issue: 5
- DOI
  10.1099/mgen.0.000830
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07026, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Persistence of Antibiotic-Resistant Escherichia coli Strains Belonging to the B2 Phylogroup in Municipal Wastewater under Aerobic Conditions2022
- Author(s)
  Xie Hui、Ogura Yoshitoshi、Suzuki Yoshihiro
- Journal Title
  
  Antibiotics
  
  Volume: 11 Issue: 2 Pages: 202-202
- DOI
  10.3390/antibiotics11020202
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527, KAKENHI-PROJECT-23K21762
[Journal Article] Diversification of Escherichia albertii H-Antigens and Development of H-Genotyping PCR2021
- Author(s)
  Nakae Koji、Ooka Tadasuke、Murakami Koichi、Hara-Kudo Yukiko、Imuta Naoko、Gotoh Yasuhiro、Ogura Yoshitoshi、Hayashi Tetsuya、Okamoto Yasuhiro、Nishi Junichiro
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 12 Pages: 737979-737979
- DOI
  10.3389/fmicb.2021.737979
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K08161, KAKENHI-PROJECT-21K07851, KAKENHI-PROJECT-20K21527
[Journal Article] The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H192021
- Author(s)
  Nishida Ruriko、Nakamura Keiji、Taniguchi Itsuki、et al.
- Journal Title
  
  Microbial Genomics
  
  Volume: 7 Issue: 12 Pages: 000716-000716
- DOI
  10.1099/mgen.0.000716
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H00530, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K07506, KAKENHI-PROJECT-21K07006, KAKENHI-PROJECT-20K21527
[Journal Article] Genome-wide association study of gastric cancer- and duodenal ulcer-derived Helicobacter pylori strains reveals discriminatory genetic variations and novel oncoprotein candidates2021
- Author(s)
  Tuan V P、Yahara K、Dung H D Q、Binh T T、Huu T P、Tri T D、Thuan N P M、Khien V V、Trang T T H、Phuc B H、Tshibangu-Kabamba E、Matsumoto T、Akada J、Suzuki R、Okimoto T、Kodama M、Murakami K、Yano H、Fukuyo M、Takahashi N、Kato M、Nishiumi S、Azuma T、Ogura Y、Hayashi T、Toyoda A、Kobayashi I、Yamaoka Y
- Journal Title
  
  Microbial Genomics
  
  Volume: 7 Issue: 11 Pages: 1-17
- DOI
  10.1099/mgen.0.000680
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16707, KAKENHI-PROJECT-19H03473, KAKENHI-PROJECT-20K07394, KAKENHI-PROJECT-21K07898, KAKENHI-PROJECT-21K08010, KAKENHI-PROJECT-18KK0266, KAKENHI-PROJECT-16H06279
[Journal Article] Insights into the acquisition of the pks island and production of colibactin in the Escherichia coli population2021
- Author(s)
  Auvray Frederic、Perrat Alexandre、Arimizu Yoko、Chagneau Camille V.、Bossuet-Greif Nadge、Massip Clmence、Brugre Hubert、Nougayrde Jean-Philippe、Hayashi Tetsuya、Branchu Priscilla、Ogura Yoshitoshi、Oswald Eric
- Journal Title
  
  Microbial Genomics
  
  Volume: 7 Issue: 5 Pages: 000579-000579
- DOI
  10.1099/mgen.0.000579
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features2021
- Author(s)
  Rei Kajitani, Hideki Noguchi, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Miki Okuno, Atsushi Toyoda, Tomomi Kuwahara, Tetsuya Hayashi, Takehiko Itoh
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 49 Issue: 22 Pages: e130-e130
- DOI
  10.1093/nar/gkab831
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-20H04125, KAKENHI-PROJECT-21K19211, KAKENHI-PROJECT-20K15769, KAKENHI-PROJECT-16H06279
[Journal Article] Development of a homogeneous time-resolved FRET (HTRF) assay for the quantification of Shiga toxin 2 produced by E. coli2021
- Author(s)
 Nakamura Keiji、Tokuda Chikashi、Arimitsu Hideyuki、Etoh Yoshiki、Hamasaki Mitsuhiro、Deguchi Yuichiro、Taniguchi Itsuki、Gotoh Yasuhiro、Ogura Yoshitoshi、Hayashi Tetsuya
- Journal Title
 
 PeerJ
 
 Volume: 9 Pages: 11871-11871
- DOI
 10.7717/peerj.11871
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Nurettin Sahin, Akio Tani
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 12 Pages: 740610-740610
- DOI
  10.3389/fmicb.2021.740610
- NAID
  120007170513
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-21H02105
[Journal Article] Prophages integrating into prophages: A mechanism to accumulate type III secretion effector genes and duplicate Shiga toxin-encoding prophages in Escherichia coli2021
- Author(s)
  Nakamura Keiji、Ogura Yoshitoshi、Gotoh Yasuhiro、Tetsuya Hayashi
- Journal Title
  
  PLOS Pathogens
  
  Volume: 17 Issue: 4 Pages: 1009073-1009073
- DOI
  10.1371/journal.ppat.1009073
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Increase of serum uric acid levels associated with APOE ε2 haplotype: a clinico-genetic investigation and in vivo approach2021
- Author(s)
  Ogura Masatsune、Toyoda Yu、Sakiyama Masayuki、Kawamura Yusuke、Nakayama Akiyoshi、et al.
- Journal Title
  
  Human Cell
  
  Volume: 34 Issue: 6 Pages: 1727-1733
- DOI
  10.1007/s13577-021-00609-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K23152, KAKENHI-PROJECT-20H00566, KAKENHI-PROJECT-20H00568, KAKENHI-PROJECT-20H04100, KAKENHI-PROJECT-20K08439, KAKENHI-PROJECT-21K08143, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-23K21618
[Journal Article] A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific2020
- Author(s)
  Wada Naohisa、Yuasa Hideaki、Kajitani Rei、Gotoh Yasuhiro、Ogura Yoshitoshi、Yoshimura Dai、Toyoda Atsushi、Tang Sen-Lin、Higashimura Yukihiro、Sweatman Hugh、Forsman Zac、Bronstein Omri、Eyal Gal、Thongtham Nalinee、Itoh Takehiko、Hayashi Tetsuya、Yasuda Nina
- Journal Title
  
  Microbiome
  
  Volume: 8 Issue: 1 Pages: 123-123
- DOI
  10.1186/s40168-020-00880-3
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H04996, KAKENHI-PROJECT-18J23317, KAKENHI-PROJECT-16H06279
[Journal Article] Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter2020
- Author(s)
  Kaito Chikara、Yoshikai Hirono、Wakamatsu Ai、Miyashita Atsushi、Matsumoto Yasuhiko、Fujiyuki Tomoko、Kato Masaru、Ogura Yoshitoshi、Hayashi Tetsuya、Isogai Takao、Sekimizu Kazuhisa
- Journal Title
  
  PLOS Pathogens
  
  Volume: 16 Issue: 4 Pages: e1008469-e1008469
- DOI
  10.1371/journal.ppat.1008469
- NAID
  120006860101
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22523, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils2020
- Author(s)
  Kinoshita-Daitoku Ryo、Ogura Yoshitoshi、Kiga Kotaro、Maruyama Fumito、Kondo Tomoyo、Nakagawa Ichiro、Hayashi Tetsuya、Mimuro Hitomi
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 9 Issue: 18
- DOI
  10.1128/mra.00105-20
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15149, KAKENHI-PROJECT-16H06279
[Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H282020
- Author(s)
  Nakamura K., Murase K., Sato MP., Toyoda A., Itoh T., Mainil JG., Pierard D., Yoshino S., Kimata K., Isobe J., Seto K., Etoh Y., Narimatsu H., Saito S., Yatsuyanagi J., Lee K., Iyoda S., Ohnishi M., Ooka T., Gotoh Y., Ogura Y., Hayashi T.
- Journal Title
  
  Microbial Genomics
  
  Volume: 6 Issue: 1
- DOI
  10.1099/mgen.0.000323
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K07116, KAKENHI-PROJECT-16H06279
[Journal Article] Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea2020
- Author(s)
  Ishimaru Kai、Sasaki Mari、Narimatsu Hiroshi、Arimizu Yoko、Gotoh Yasuhiro、Nakamura Keiji、Hayashi Tetsuya、Ogura Yoshitoshi
- Journal Title
  
  Open Forum Infectious Diseases
  
  Volume: 7 Issue: 1
- DOI
  10.1093/ofid/ofaa021
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] Genotypical and serological diversity of Streptococcus suis and the S. suis-like bacterium, Streptococcus ruminantium, in ruminants.2019
- Author(s)
  Okura, M., Maruyama, F., Ota, A., Tanaka, T., Matoba, Y., Osawa, A., Sadaat, S.M., Osaki, M., Toyoda, A., Y. Ogura, Y., Hayashi, T.,Takamatsu, D.
- Journal Title
  
  Vet. Res.
  
  Volume: 50 Issue: 1 Pages: 94-94
- DOI
  10.1186/s13567-019-0708-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H01782, KAKENHI-PROJECT-16H06279
[Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.2019
- Author(s)
  Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
- Journal Title
  
  DNA Res.
  
  Volume: 26 Issue: 5 Pages: 391-398
- DOI
  10.1093/dnares/dsz017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer2019
- Author(s)
  Yachida Shinichi、Mizutani Sayaka、Shiroma Hirotsugu、Shiba Satoshi、Nakajima Takeshi、Sakamoto Taku、Saito Yutaka、Fukuda Shinji、Shibata Tatsuhiro、Yamada Takuji
- Journal Title
  
  Nature Medicine
  
  Volume: 25 Issue: 6 Pages: 968-976
- DOI
  10.1038/s41591-019-0458-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08416, KAKENHI-PROJECT-18K15800, KAKENHI-PUBLICLY-18H04805, KAKENHI-PROJECT-16H06373, KAKENHI-PROJECT-19J40249, KAKENHI-PROJECT-16H06279
[Journal Article] Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean2019
- Author(s)
  Hashihama Fuminori、Suwa Shuhei、Kanda Jota、Ehama Makoto、Sakuraba Ryousuke、Kinouchi Shinko、Sato Mitsuhide、Yamaguchi Tamaha、Saito Hiroaki、Ogura Yoshitoshi、Hayashi Tetsuya、Mori Hiroshi、Kurokawa Ken、Suzuki Shotaro、Hamasaki Koji
- Journal Title
  
  Progress in Oceanography
  
  Volume: 176 Pages: 102115-102115
- DOI
  10.1016/j.pocean.2019.05.007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02562, KAKENHI-PROJECT-15H02802, KAKENHI-PROJECT-16H06279
[Journal Article] Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.2019
- Author(s)
  Takizawa N, Ogura Y, Fujita Y, Noda T, Shigematsu H, Hayashi T, Kurokawa K
- Journal Title
  
  Virology
  
  Volume: 531 Pages: 126-140
- DOI
  10.1016/j.virol.2019.03.004
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-18K06172, KAKENHI-PROJECT-19K07598, KAKENHI-PROJECT-19K22529, KAKENHI-PROJECT-17H04082
[Journal Article] Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP2019
- Author(s)
  Yoshimura Dai、Kajitani Rei、Gotoh Yasuhiro、Katahira Katsuyuki、Okuno Miki、Ogura Yoshitoshi、Hayashi Tetsuya、Itoh Takehiko
- Journal Title
  
  Microbial Genomics
  
  Volume: 5 Issue: 5
- DOI
  10.1099/mgen.0.000261
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05979, KAKENHI-PROJECT-16H06279
[Journal Article] O-antigen biosynthesis gene clusters of Escherichia albertii: their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method.2019
- Author(s)
  Ooka T, Seto K, Ogura Y, Nakamura K, Iguchi A, Gotoh Y, Honda M, Etoh Y, Ikeda T, Sugitani W, Konno T, Kawano K, Imuta N, Yoshiie K, Hara-Kudo Y, Murakami K, Hayashi T, Nishi J
- Journal Title
  
  Microb Genom
  
  Volume: 5（11） Issue: 11
- DOI
  10.1099/mgen.0.000314
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K10118, KAKENHI-PROJECT-16H05845, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Features of Rickettsia heilongjiangensis Revealed by Intraspecies Comparison and Detailed Comparison With Rickettsia japonica2019
- Author(s)
  Kasama K, Fujita H, Yamamoto S, Ooka T, Gotoh Y, Ogura Y, Ando S, Hayashi T.
- Journal Title
  
  Front Microbiol
  
  Volume: 6
- DOI
  10.3389/fmicb.2019.02787
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22536, KAKENHI-PROJECT-16H06279
[Journal Article] Alternative oxidase capacity of mitochondria in microsporophylls may function in cycad thermogenesis2019
- Author(s)
  Ito-Inaba Yasuko、Sato Mayuko、Sato Mitsuhiko P、Kurayama Yuya、Yamamoto Haruna、Ohata Mizuki、Ogura Yoshitoshi、Hayashi Tetsuya、Toyooka Kiminori、Inaba Takehito
- Journal Title
  
  Plant Physiology
  
  Volume: 180 Issue: 2 Pages: 743-756
- DOI
  10.1104/pp.19.00150
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07762, KAKENHI-PROJECT-18H02169, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K07477
[Journal Article] Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak2019
- Author(s)
  Gotoh Yasuhiro、Taniguchi Takako、Yoshimura Dai、Katsura Keisuke、Saeki Yuji、Hirabara Yasutoshi、Fukuda Mayumi、Takajo Ichiro、Tomida Junko、Kawamura Yoshiaki、Ogura Yoshitoshi、Itoh Takehiko、Misawa Naoaki、Okayama Akihiko、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 5 Issue: 12 Pages: 1-11
- DOI
  10.1099/mgen.0.000236
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K08081, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.2019
- Author(s)
  Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Dopfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y
- Journal Title
  
  Genome Research
  
  Volume: 29 Issue: 9 Pages: 1495-1505
- DOI
  10.1101/gr.249268.119
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K09183, KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] Effects of bacterial pollution caused by a strong typhoon event and the restoration of a recreational beach: Transitions of fecal bacterial counts and bacterial flora in beach sand2018
- Author(s)
  Suzuki, Y., Teranishi, K., Matsuwaki, T., Nukazawa, K., Ogura, Y.
- Journal Title
  
  Science of the Total Environment
  
  Volume: 640-641 Pages: 52-61
- DOI
  10.1016/j.scitotenv.2018.05.265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K11680, KAKENHI-PROJECT-17H04077
[Journal Article] Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic2018
- Author(s)
  K. Nakanaga, Y. Ogura, A. Toyoda, M. Yoshida, H. Fukano, N. Fujiwara, Y. Miyamoto, N. Nakata, Y. Kazumi, S. Maeda, T. Ooka, M. Goto, K. Tanigawa, S. Mitarai, K. Suzuki, N. Ishii, M. Ato, T. Hayashi, and Y. Hoshino
- Journal Title
  
  Sci Rep
  
  Volume: 29;8(1) Issue: 1 Pages: 8218-8218
- DOI
  10.1038/s41598-018-26425-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K08792, KAKENHI-PROJECT-18K08312, KAKENHI-PROJECT-17K16066, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Characterization of β-Glucuronidase?Positive Escherichia coli O157:H7 Producing Stx2a2018
- Author(s)
  Ogura Yoshitoshi、Seto Kazuko、Morimoto Yo、Nakamura Keiji、Sato Mitsuhiko P.、Gotoh Yasuhiro、Itoh Takehiko、Toyoda Atsushi、Ohnishi Makoto、Hayashi Tetsuya
- Journal Title
  
  Emerging Infectious Diseases
  
  Volume: 24 Issue: 12 Pages: 2219-2227
- DOI
  10.3201/eid2412.180404
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia2018
- Author(s)
  Kumagai Yohei、Yoshizawa Susumu、Nakajima Yu、Watanabe Mai、Fukunaga Tsukasa、Ogura Yoshitoshi、Hayashi Tetsuya、Oshima Kenshiro、Hattori Masahira、Ikeuchi Masahiko、Kogure Kazuhiro、DeLong Edward F.、Iwasaki Wataru
- Journal Title
  
  The ISME Journal
  
  Volume: in press Issue: 5 Pages: 1329-1343
- DOI
  10.1038/s41396-018-0058-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05834, KAKENHI-PROJECT-15H02800, KAKENHI-PROJECT-16H06154, KAKENHI-PROJECT-15J08516, KAKENHI-PROJECT-16H06279
[Journal Article] Population structure of Escherichia coli O26:H11 with recent and repeated stx2 acquisition in multiple lineages2017
- Author(s)
  Ogura Yoshitoshi、Gotoh Yasuhiro、Itoh Takehiko、et al.
- Journal Title
  
  Microbial Genomics
  
  Volume: 3 Issue: 11
- DOI
  10.1099/mgen.0.000141
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K15278, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence of Klebsiella pneumoniae YH43.2016
- Author(s)
  Iwase T, Ogura Y, Hayashi T, Mizunoe Y.
- Journal Title
  
  Genome Announc
  
  Volume: 4 Issue: 2
- DOI
  10.1128/genomea.00242-16
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26293100, KAKENHI-PROJECT-24687032, KAKENHI-PROJECT-16K14821, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence of a Phycodnavirus, Heterosigma akashiwo Virus Strain 53.2016
- Author(s)
  Ogura Y, Hayashi T, Ueki S.
- Journal Title
  
  Genome Announc.
  
  Volume: 4 Issue: 6
- DOI
  10.1128/genomea.01279-16
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC.2016
- Author(s)
  Fakih I, Thiry D, Duprez JN, Saulmont M, Iguchi A, Pirard D, Jouant L, Daube G, Ogura Y, Hayashi T, Taminiau B, Mainil JG.
- Journal Title
  
  Vet Microbiol.
  
  Volume: 23 Pages: 16-22
- DOI
  10.1016/j.vetmic.2016.02.017
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25460542
[Journal Article] Phylogenetic analysis of enteroaggregative Escherichia coli (EAEC) isolates from Japan reveals emergence of CTX-M-14-producing EAEC O25:H4 clones related to sequence type 131.2016
- Author(s)
  Imuta N, Ooka T, Seto K, Kawahara R, Koriyama T, Kojyo T, Iguchi A, Tokuda K, Kawamura H, Yoshiie K, Ogura Y, Hayashi T, Nishi J
- Journal Title
  
  J Clin Microbiol
  
  Volume: 54（8） Issue: 8 Pages: 2128-2134
- DOI
  10.1128/jcm.00711-16
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H05845, KAKENHI-PROJECT-26461589, KAKENHI-PROJECT-16H06279
[Journal Article] Mitochondrial Genome Sequences of Four Strains of the Bloom-Forming Raphidophyte Heterosigma akashiw2016
- Author(s)
  Ogura Y, Nakayama N, Hayashi T, Ueki S.
- Journal Title
  
  Genome Announc.
  
  Volume: 4 Issue: 6
- DOI
  10.1128/genomea.01288-16
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Genetic relatedness and virulence properties of enteropathogenic Escherichia coli strains of serotype O119:H6 expressing localized adherence or localized and aggregative adherence-like patterns on HeLa cells.2016
- Author(s)
  Garcia BG, Ooka T, Gotoh Y, Vieira MA, Yamamoto D, Ogura Y, Girão DM, Sampaio SC, Melo AB, Irino K, Hayashi T, Gomes TA.
- Journal Title
  
  Int J Med Microbiol.
  
  Volume: 27 Issue: 3 Pages: 152-164
- DOI
  10.1016/j.ijmm.2016.02.008
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25460542, KAKENHI-PROJECT-25670468
[Journal Article] Complete Genome Sequence of Klebsiella oxytoca Strain JKo3.2016
- Author(s)
  Iwase T, Ogura Y, Hayashi T, Mizunoe Y.
- Journal Title
  
  Genome Announc
  
  Volume: 4 Issue: 6
- DOI
  10.1128/genomea.01221-16
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26293100, KAKENHI-PROJECT-24687032, KAKENHI-PROJECT-16K14821, KAKENHI-PROJECT-16H06279
[Journal Article] The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent finescale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat.2016
- Author(s)
  Mariko Naito, Yoshitoshi Ogura, Takehiko Itoh, Mikio Shoji, Masaaki Okamoto, Tetsuya Hayashi, and Koji Nakayama
- Journal Title
  
  DNA Research
  
  Volume: 23 Pages: 11-16
- DOI
  10.1093/dnares/dsv032
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26462789, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25462863, KAKENHI-PLANNED-24117006
[Journal Article] The genomic basis of parasitism in the Strongyloides clade of nematodes2016
- Author(s)
  Hunt, V. L. Tsai, I. J. Coghlan, A. Reid, A. J. Holroyd, N. Foth, B. J. Tracey, A. Cotton, J. A. Stanley, E. J. Beasley, H. Bennett, H. M. Brooks, K. Harsha, B. Kajitani, R. Kulkarni, A. Harbecke, D. Nagayasu, E et.al
- Journal Title
  
  Nature genetics
  
  Volume: 48 Issue: 3 Pages: 299-307
- DOI
  10.1038/ng.3495
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26460509, KAKENHI-PROJECT-26460510, KAKENHI-PROJECT-221S0002
[Journal Article] Emergence of a Multidrug-Resistant Shiga Toxin-Producing Enterotoxigenic Escherichia coli Lineage in Diseased Swine in Japan.2016
- Author(s)
  Kusumoto M, Hikoda Y, Fujii Y, Murata M, Miyoshi H, Ogura Y, Gotoh Y, Iwata T, Hayashi T, Akiba M.
- Journal Title
  
  J Clin Microbiol.
  
  Volume: 54 Issue: 4 Pages: 1074-81
- DOI
  10.1128/jcm.03141-15
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25460542, KAKENHI-PROJECT-16H05190, KAKENHI-PROJECT-15K08484
[Journal Article] A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster.2015
- Author(s)
  Atsushi Iguchi, Sunao Iyoda, Taisei Kikuchi, Yoshitoshi Ogura, Keisuke Katsura, Makoto Ohnishi, Tetsuya Hayashi, Nicholas R Thomson
- Journal Title
  
  DNA Res
  
  Volume: 22 Issue: 1 Pages: 101-107
- DOI
  10.1093/dnares/dsu043
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24780044, KAKENHI-PUBLICLY-25125718, KAKENHI-PROJECT-25460542
[Journal Article] Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae.2015
- Author(s)
  Ushida K, Tsuchida S, Ogura Y, Toyoda A, Maruyama F.
- Journal Title
  
  Anim Sci J.
  
  Volume: Aug 27 Issue: 6 Pages: 12492-12492
- DOI
  10.1111/asj.12492
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence2015
- Author(s)
  Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M.
- Journal Title
  
  ISME Journal
  
  Volume: in press Issue: 5 Pages: 1166-1176
- DOI
  10.1038/ismej.2014.209
- NAID
  120005667717
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-221S0002
[Journal Article] Defining the Genome Features of Escherichia albertii, an Emerging Enteropathogen Closely Related to Escherichia coli2015
- Author(s)
  Ooka T, Ogura Y, Katsura K, Seto K, Kobayashi H, Kawano K, Tokuoka E, Furukawa M, Harada S, Yoshino S, Seto J, Ikeda T, Yamaguchi K, Murase K, Gotoh Y, Imuta N, Nishi J, Gomes TA, Beutin L, Hayashi T.
- Journal Title
  
  Genome Biol Evol
  
  Volume: 7(12) Pages: 3170-3179
- DOI
  10.1093/gbe/evv211
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26461589, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25460539
[Journal Article] Draft Genome Sequence of Lactobacillus gorillae Strain KZ01T, Isolated from a Western Lowland Gorilla.2015
- Author(s)
  Tsuchida S, Nezuo M, Tsukahara M, Ogura Y, Hayashi T, Ushida K.
- Journal Title
  
  Genome announcements
  
  Volume: 3 Issue: 5 Pages: 1-1
- DOI
  10.1128/genomea.01196-15
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K18775, KAKENHI-PROJECT-221S0002
[Journal Article] The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage.2015
- Author(s)
  Yoshitoshi Ogura, Shakhinur Islam Mondal, Md Rakibul Islam, Toshihiro Mako, Kokichi Arisawa, Keisuke Katsura, Tadasuke Ooka, Yasuhiro Gotoh, Kazunori Murase, Makoto Ohnishi, and Tetsuya Hayashi
- Journal Title
  
  Scientific Reports
  
  Volume: 5 Issue: 1 Pages: 16663-16663
- DOI
  10.1038/srep16663
- NAID
  120006875675
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25460539, KAKENHI-PROJECT-25460542
[Journal Article] Complete genome sequence of Methylobacterium aquaticum strain 22A, isolated from Racomitrium japonicum moss.2015
- Author(s)
  Tani A., Ogura Y., Hayashi T., Kimbara K.
- Journal Title
  
  Genome Announc
  
  Volume: 3 Issue: 2
- DOI
  10.1128/genomea.00266-15
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25660060, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04476
[Journal Article] Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses.2015
- Author(s)
  Yuta Matsumura, Hidayu Al-saari, Sayaka Mino, Satoshi Nakagawa, Fumito Maruyama, Yoshitoshi Ogura, Tetsuya Hayashi, Ken Kurokawa, Toko Sawabe, Tomoo Sawabe.
- Journal Title
  
  Int. J. Hydrogen Energy
  
  Volume: 40 Pages: 9137-9146
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Draft genome sequence of the archiascomycetous yeast Saitoella complicata.2015
- Author(s)
  Yamauchi K, Kondo S, Hamamoto M, Takahashi Y, Ogura Y, Hayashi T, Nishida H
- Journal Title
  
  Genome Announcements
  
  Volume: 3 Issue: 3
- DOI
  10.1128/genomea.00220-15
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25440188
[Journal Article] Draft genome sequence of the archiascomycetous yeast Saitoella complicata.2015
- Author(s)
  Kenta Yamauchi, Shinji Kondo, Makiko Hamamoto, Yurika Takahashi, Yoshitoshi Ogura, Tetsuya Hayashi, Hiromi Nishida
- Journal Title
  
  Genome Announc.
  
  Volume: in press
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a gamma-Hexachlorocyclohexane-Degrading Mixed Culture2014
- Author(s)
  Ohtsubo Y, Kishida K, Sato T, Tabata M, Kawasumi T, Ogura Y, Hayashi T, Tsuda M, Nagata Y
- Journal Title
  
  Genome announcements
  
  Volume: 2 Issue: 1
- DOI
  10.1128/genomea.01241-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-24658068, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-221S0002
[Journal Article] Phylogenetic Clades 6 and 8 of Enterohemorrhagic Escherichia coli O157:H7 With Particular stx Subtypes are More Frequently Found in Isolates From Hemolytic Uremic Syndrome Patients Than From Asymptomatic Carriers.2014
- Author(s)
  Iyoda S, Manning SD, Seto K, Kimata K, Isobe J, Etoh Y, Ichihara S, Migita Y, Ogata K, Honda M, Kubota T, Kawano K, Matsumoto K, Kudaka J, Asai N, Yabata J, Tominaga K, Terajima J, Morita-Ishihara T, Izumiya H, Ogura Y, et al.
- Journal Title
  
  Open Forum Infect Dis.
  
  Volume: 12 Issue: 2
- DOI
  10.1093/ofid/ofu061
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-25125718, KAKENHI-PROJECT-25460542
[Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli2014
- Author(s)
 Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K,Ohinishi M, Sekine Y
- Journal Title
 
 J. Gen. Appl. Microbiol.
 
 Volume: 60 Issue: 1 Pages: 44-50
- DOI
 10.2323/jgam.60.44
- NAID
 130004802264
- ISSN
 0022-1260, 1349-8037
- Language
 English
- Peer Reviewed
- Data Source
 KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-26460525, KAKENHI-PROJECT-221S0002
[Journal Article] Complete genome sequence of Pseudomonas aeruginosa MTB-1 isolated from a microbial community enriched by the technical formulation of hexachlorocyclohexane.2014
- Author(s)
  Ohtsubo, Y., T. Sato, K. Kishida, M. Tabata, Y. Ogura, T. Hayashi, M. Tsuda, and Y. Nagata
- Journal Title
  
  Genome Announcements
  
  Volume: 2 Issue: 1
- DOI
  10.1128/genomea.01130-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-24658068, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-221S0002
[Journal Article] Assessment of Helminth Biodiversity in Wild Rats Using 18S rDNA Based Metagenomics2014
- Author(s)
  Ryusei Tanaka, Akina Hino, Isheng J. Tsai, Juan Emilio Palomares-Rius1, Ayako Yoshida,Yoshitoshi Ogura, Tetsuya Hayashi, Haruhiko Maruyama, Taisei Kikuchi
- Journal Title
  
  PLOS ONE
  
  Volume: 9 Issue: 10 Pages: e110769-e110769
- DOI
  10.1371/journal.pone.0110769
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-13J09930, KAKENHI-PROJECT-24780044, KAKENHI-PROJECT-26460510, KAKENHI-PROJECT-221S0002
[Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli.2014
- Author(s)
  Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K, Ohnishi M, Sekine Y.
- Journal Title
  
  J Gen Appl Microbiol.
  
  Volume: 60 Pages: 44-50
- NAID
  130004802264
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25460542
[Journal Article] Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.2014
- Author(s)
  Susumu Yoshizawa, Yohei Kumagai, Hana Kim, Yoshitoshi Ogura, Tetsuya Hayashi, Wataru Iwasaki, Edward F. DeLong, and Kazuhiro Kogure.
- Journal Title
  
  Proc Natl Acad Sci U S A
  
  Volume: 111 Issue: 18 Pages: 6732-6737
- DOI
  10.1073/pnas.1403051111
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23710231, KAKENHI-PROJECT-24681003, KAKENHI-PROJECT-221S0002
[Journal Article] Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.2014
- Author(s)
  R. Kajitani, K. Toshimoto, H. Noguchi, A. Toyoda, Y. Ogura, M. Okuno, M. Yabana, M. Harada, E. Nagayasu, H. Maruyama, Y. Kohara, A. Fujiyama, T. Hayashi and T.Itoh
- Journal Title
  
  Genome Research,
  
  Volume: 24 Issue: 8 Pages: 1384-1384
- DOI
  10.1101/gr.170720.113
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22125001, KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-24310142, KAKENHI-PUBLICLY-25125718, KAKENHI-PROJECT-25250024, KAKENHI-PROJECT-25460542, KAKENHI-PROJECT-221S0002
[Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli.2014
- Author(s)
  Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K, Ohnishi M, Sekine Y
- Journal Title
  
  J Gen Appl Microbiol.
  
  Volume: 60 Pages: 44-50
- NAID
  130004802264
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-25125718
[Journal Article] Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis2013
- Author(s)
  Nagayasu E, Ogura Y, Itoh T, Yoshida A, Chakraborty G, Hayashi T, Maruyama H
- Journal Title
  
  Parasitology International
  
  Volume: 62(1) Issue: 1 Pages: 57-65
- DOI
  10.1016/j.parint.2012.09.006
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790461, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-24659190, KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-221S0002, KAKENHI-PUBLICLY-23125511
[Journal Article] A human outbreak case associated with Escherichia albertii2013
- Author(s)
  T. Ooka, E. Tokuoka, M. Fukuhara, T. Nagamura, Y. Ogura, K. Aisawa, S. Harada, T. Hayashi
- Journal Title
  
  Emerg. Infect. Dis.
  
  Volume: 19 Issue: 1 Pages: 144-146
- DOI
  10.3201/eid1901.120646
- URL
  http://dx.doi.org/
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-23790480
[Journal Article] Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient2013
- Author(s)
  K. Minegishi, C. Aikawa, A. Furukawa, T. Watanabe, T. Nakano, Y. Ogura, Y. Ohtsubo, K. Kurokawa, T. Hayashi, F. Maruyama, I. Nakagawa, Y. Eishi
- Journal Title
  
  Genome Announc.
  
  Volume: 1 Pages: 1-1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] Complete genome sequence of a Propionibacterium acnes isolate from a sarcoidosis patient.2013
- Author(s)
  Minegishi K, Aikawa C, Furukawa A, Watanabe T, Nakano T, Ogura Y, Ohtsubo Y, Kurokawa K, Hayashi T, Maruyama F, Nakagawa I, Eishi Y
- Journal Title
  
  Genome Announcement
  
  Volume: 1 Issue: 1 Pages: 16-12
- DOI
  10.1128/genomea.00016-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J05796, KAKENHI-PROJECT-12J06919, KAKENHI-PROJECT-22380176, KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-24659402, KAKENHI-PUBLICLY-25125708, KAKENHI-PROJECT-25293370, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-25670775, KAKENHI-PROJECT-221S0002, KAKENHI-PUBLICLY-23125511
[Journal Article] Updating the Vibrio clades defined by multilocus sequence phylogeny: Proposal of eight new clades, and the description of Vibrio tritonius sp. nov.2013
- Author(s)
  Sawabe T, Ogura Y, Matsumura Y, Gao F, Amin A, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson F, Gomez-Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T
- Journal Title
  
  Frontiers in Aquatic Microbiol.
  
  Volume: 4 Pages: 1-14
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] A sensitive and simple plaque formation method for the Stx2 phage of Escherichia coliO157:H7, which does not form plaques in the standard plating procedure2012
- Author(s)
  Md. R. Islam, Y. Ogura, Md. Asdulghani, T. Ooka, K. Murase, Y. Gotoh, T. Hayashi
- Journal Title
  
  Plasmid
  
  Volume: 67(3) Pages: 227-235
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] 腸管出血性大腸菌における病原性のゲノム進化.2012
- Author(s)
  小椋義俊
- Journal Title
  
  感染・炎症・免疫
  
  Volume: 42 Pages: 182-195
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Whole-Genome Sequence of the Hypervirulent Clinical Strain Mycobacterium intracellulare M.i.198.2012
- Author(s)
  Tateishi, Y., S. Kitada, K. Miki, R. Maekura, Y. Ogura, Y. Ozeki, Y. Nishiuchi, M. Niki, T. Hayashi, K. Hirata, K. Kobayashi, and S. Matsumoto.
- Journal Title
  
  Journal of Bacteriology
  
  Volume: 194 Issue: 22 Pages: 6336-6336
- DOI
  10.1128/jb.01439-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23406011, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-24501015, KAKENHI-PUBLICLY-23125511
[Journal Article] Detection of diverse aquatic microbes in blood and organs of drowning victims : First metagenomic approach using high-throughput 454-pyrosequencing2012
- Author(s)
  Eiji Kakizaki, Yoshitoshi Ogura, Shuji Kozawa, Sho Nishida, Taketo Uchiyama, Tetsuya Hayashi, Nobuhiro Yukawa
- Journal Title
  
  Forensic Science International
  
  Volume: (in press) Pages: 10-10
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22790598
[Journal Article] Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia2012
- Author(s)
  Goto T, et al
- Journal Title
  
  J Bacteriol
  
  Volume: 194 Issue: 14 Pages: 3744-3745
- DOI
  10.1128/jb.00645-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23651239, KAKENHI-PROJECT-23790106, KAKENHI-PROJECT-23790478, KAKENHI-PUBLICLY-23125511
[Journal Article] Clinical significance of Escherichia albertii.Emerg2012
- Author(s)
  T.Ooka, et al
- Journal Title
  
  Emerg.Infect.Dis.
  
  Volume: (in press) Issue: 3 Pages: 488-492
- DOI
  10.3201/eid1803.111401
- URL
  http://dx.doi.org/
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790480
[Journal Article] Detection of diverse aquatic microbes in blood and organs of drowning victims : First metagenomic approach using high-throughput 454-pyrosequencing2012
- Author(s)
  Kakizaki E, et al
- Journal Title
  
  Forensic Science International
  
  Volume: (in press) Issue: 1-3 Pages: 135-146
- DOI
  10.1016/j.forsciint.2012.02.010
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22790598, KAKENHI-PROJECT-23790478, KAKENHI-PUBLICLY-23125511
[Journal Article] Is bile acid a determinant of the gut microbiota on a high-fat diet?2012
- Author(s)
  A. Yokota, S. Fukiya, T. Ooka, Y. Ogura, T. Hayashi, S. Ishizuka
- Journal Title
  
  Gut Microbes
  
  Volume: 3(5) Issue: 5 Pages: 455-459
- DOI
  10.4161/gmic.21216
- URL
  http://dx.doi.org/
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-23790480
[Journal Article] Hemolysin E- and enterohemolysin-derived hemolytic activity of O55/O157 strains and other Escherichia coli lineages2012
- Author(s)
  K.Murase, et al
- Journal Title
  
  Microbiology
  
  Volume: 158 Issue: 3 Pages: 746-758
- DOI
  10.1099/mic.0.054775-0
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790474, KAKENHI-PROJECT-23790478
[Journal Article] 腸管出血性大腸菌O111の進化と病原性2012
- Author(s)
  小椋義俊,　大岡唯祐,　林哲也
- Journal Title
  
  神経内科
  
  Volume: 76 Pages: 155-163
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] Clinical significance of Escherichia albertii2012
- Author(s)
  T. Ooka, K. Seto, K. Kawano, H. Kobayashi, Y. Etoh, S. Ichihara, A. Kaneko, J. Isobe, K. Yamaguchi, K. Horikawa, T.A.T. Gomes, A. Linden, M. Bardiau, J. Mainil, L. Beutin, Y. Ogura, T. Hayashi
- Journal Title
  
  Emerg. Infect. Dis
  
  Volume: 18(3) Pages: 488-492
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] 腸管出血性大腸菌O111の進化と病原性2012
- Author(s)
  小椋義俊,　大岡唯祐,　林哲也
- Journal Title
  
  神経内科
  
  Volume: 76 Pages: 155-163
- Data Source
  KAKENHI-PUBLICLY-23125511
[Journal Article] Is bile acid a determinant of the gut microbiota on a high-fat diet?2012
- Author(s)
  A. Yokota, S. Fukiya, T. Ooka, Y. Ogura, T. Hayashi, S. Ishizuka
- Journal Title
  
  Gut Microbes
  
  Volume: 3 Pages: 455-459
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511
[Journal Article] 腸管出血性大腸菌O111の進化と病原性2012
- Author(s)
  小椋義俊, 大岡唯祐, 林哲也
- Journal Title
  
  神経内科
  
  Volume: 76(2) Pages: 155-163
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] 腸管出血性大腸菌における病原性のゲノム進化2012
- Author(s)
  小椋義俊, 林哲也
- Journal Title
  
  感染・炎症・免疫
  
  Volume: 42 Pages: 182-195
- Data Source
  KAKENHI-PROJECT-23790478
[Journal Article] 腸管出血性大腸菌における病原性のゲノム進化2012
- Author(s)
  小椋義俊,　林哲也
- Journal Title
  
  感染・炎症・免疫
  
  Volume: 42 Pages: 182-195
- Data Source
  KAKENHI-PUBLICLY-23125511
[Journal Article] Bile Acid is a Host Factor that Regulates the Composition of the Cecal Microbiota in Rats2011
- Author(s)
  Islam KBMS, Fukiya S, Hagio M, Fujii N, Ishizuka S, Ooka T, Ogura Y, Hayashi T, Yokota A
- Journal Title
  
  Gastroenterology
  
  Volume: VOL. 141 Issue: 5 Pages: 1773-1781
- DOI
  10.1053/j.gastro.2011.07.046
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380053, KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23310144, KAKENHI-PROJECT-23790478
[Journal Article] Genome sequence of photobacterium mandapamensis strain svers. 1.1, the bioluminescent symbiont of the cardinal fish siphamia versicolor2011
- Author(s)
  H.Urbanczyk, et al
- Journal Title
  
  J.Bacteriol.
  
  Volume: 193 Issue: 12 Pages: 3144-3145
- DOI
  10.1128/jb.00370-11
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790478
[Journal Article] The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of Firmicutes and the organism's intracellular adaptations2011
- Author(s)
  Y.Ogawa, et al
- Journal Title
  
  J.Bacteriol.
  
  Volume: 193 Issue: 12 Pages: 2959-2971
- DOI
  10.1128/jb.01500-10
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790478
[Journal Article] Wide distribution of O157-antigen biosynthesis gene clusters 1 in Escherichia coli2011
- Author(s)
  A.Iguchi, et al
- Journal Title
  
  PLoS ONE
  
  Volume: 6 Issue: 8 Pages: e23250-e23250
- DOI
  10.1371/journal.pone.0023250
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790478
[Journal Article] IS621-based multiplex PCR printing method of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle2011
- Author(s)
  J.G.Mainil, et al
- Journal Title
  
  J.Appl.Microbiol.
  
  Volume: 111 Issue: 3 Pages: 773-786
- DOI
  10.1111/j.1365-2672.2011.05089.x
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23790478
[Journal Article] Characterisation of the Porphyromonas gingivalis conjugative transposon CTnPg1 : determination of the integration site and the genes essential for conjugal transfer2011
- Author(s)
  M.Naito, et al
- Journal Title
  
  Microbiology
  
  Volume: 157 Issue: 7 Pages: 2022-2032
- DOI
  10.1099/mic.0.047803-0
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23125511, KAKENHI-PROJECT-23310144, KAKENHI-PROJECT-23592704, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-23792110
[Journal Article] IS-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions.2011
- Author(s)
  M.Kusumoto, T.Ooka, Y.Nishiya, Y.Ogura, (他4名) T.Hayashi
- Journal Title
  
  Nat.Commun. 2:152
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Complete genome sequence of the wild-type commensal Escherichia coil strain SE15, belonging to phylogenetic group B2.2010
- Author(s)
  H.Toh, K.Oshima, A.Toyoda, Y.Ogura, T.Ooka, (他3名) K.Kurokawa, (他3名) T.Hayashi, M.Hattori
- Journal Title
  
  J.Bacteriol. 192(4)
  
  Pages: 1165-1166
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] The complete genome sequence and comparative genome analysis of enteropathogenic E. coli 0127:H6 strain E2348/69.2009
- Author(s)
  A.Iguchi, N.R.Thomson, Y.Ogura, D.Saunders, T.Ooka, 他, K.Kurokawa, 他, T.Hayashi, J.Parkhill, G.Frankel
- Journal Title
  
  J.Bacteriol. 191(1)
  
  Pages: 347-354
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見2009
- Author(s)
  小椋義俊, 大岡唯祐, 林哲也
- Journal Title
  
  化学療法の領域 25
  
  Pages: 767-777
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Inference of the impact of insertion sequence (IS)elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes2009
- Author(s)
  Ooka T., Ogura Y., (他5名), Hayashi T.
- Journal Title
  
  Genome Res 19
  
  Pages: 1809-16
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli2009
- Author(s)
  小椋義俊, et al.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 106
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] The defective prophage pool of Escherichia coli O157:prophage-prophage interactions potentiate horizontal transfer of virulence determinants2009
- Author(s)
  Asagulghani Md, Ogura Y., Ooka T., (他4名), Hayashi T.
- Journal Title
  
  PLoS Pathog 5
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見2009
- Author(s)
  小椋義俊, 大岡唯祐, 林哲也
- Journal Title
  
  化学療法の領域 25
  
  Pages: 767-777
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] A precise reconstruction of the emergence and constrained radiations of Escherichia coll 0157 portrayed by backbone concatenomic analysis.2009
- Author(s)
  S.R.Leopold, 他, Y.Ogura, A.Iguchi, T.Hayashi, 他, P.I.Tarr
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 106(21)
  
  Pages: 8713-8718
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli2009
- Author(s)
  Y. Ogura, T. Ooka, A. Iguchi, H. Toh, Md. Asadulghani, K. Oshima, T. Kodama, H. Abe, K. Nakayama, K. Kurokawa, T. Tobe, M. Hattori, T. Hayashi
- Journal Title
  
  Proc. Natl. Acad. Sci. USA 106(42)
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見2009
- Author(s)
  小椋義俊, 他
- Journal Title
  
  化学療法の領域 25(5)
  
  Pages: 767-777
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli 0157 genomes.2009
- Author(s)
  T.Ooka, Y.Ogura, (他5名), T.Hayashi
- Journal Title
  
  Genome Res. 19
  
  Pages: 1809-1816
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Development of a multiplex PCR-based rapid typing method for enterohemorrhagic Escherichia 0157 strains.2009
- Author(s)
  T.Ooka, (他3名), K.Kurokawa, Y.Ogura, (他6名), T.Hayashi
- Journal Title
  
  J.Clin.Microbiol. 47(9)
  
  Pages: 2888-2894
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis.2009
- Author(s)
  S.R. Leopold, V. Magrini, N.J. Holt, N. Shaikh, E.R. Mardis, J. Cagno, Y. Ogura, A. Iguchi, T. Hayashi, A. Mellmann, H. Karch, T.E. Besser, S.A. Sawyer, T.S. Whittam, P.I. Tarr
- Journal Title
  
  Proc. Natl. Acad. Sci. USA. 106(21)
  
  Pages: 8713-8718
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes2009
- Author(s)
  T. Ooka, Y. Ogura, Md. Asadulghani, M. Ohnishi, K. Nakayama, J. Terajima, H. Watanabe, T. Hayashi
- Journal Title
  
  Genome Res. 19
  
  Pages: 1809-1816
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Development of a multiplex PCR-based rapid typing method for enterohemorrhagic Escherichia coli O157 strains2009
- Author(s)
  Ooka T., (他4名), Ogura Y., (他6名), Hayashi T.
- Journal Title
  
  J Clin Microbiol 47
  
  Pages: 2888-94
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Pulsed-field gel electrophoresis profile changes resulting from spontaneous chromosomal deletions in enterohemorrhagic Escherichia coli 0157:H7 during passage in cattle.2009
- Author(s)
  N.Yoshii, Y.Ogura, T.Hayashi, (他5名), M.Akiba
- Journal Title
  
  Appl.Environ.Microbiol. 75(17)
  
  Pages: 5719-5726
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Pulsed-field gel electrophoresis profile changes resulting from spontaneous chromosomal deletions in enterohemorrhagic Escherichia coli O157:H7 during passage in cattle2009
- Author(s)
  N. Yoshii, Y. Ogura, T. Hayashi, T. Ajiro, T. Sameshima, M. Nakazawa, M. Kusumoto, T. Iwata, M. Akiba
- Journal Title
  
  Appl. Environ. Microbiol. 75(17)
  
  Pages: 5719-5726
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli2009
- Author(s)
  Ogura Y., Ooka T., (他10名), Tobe T., Hattori M., Hayashi T.
- Journal Title
  
  Proc Natl Acad Sci USA 106
  
  Pages: 17939-44
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] The defective prophage pool of Escherichia coll 0157 : prophage-prophage interactions potentiate horizontal transfer of virulence determinants.2009
- Author(s)
  Md.Asadulghani, Y.Ogura, T.Ooka, (他4名), T.Hayashi
- Journal Title
  
  PLoS Pathog. 5(5)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見2009
- Author(s)
  小椋義俊, 大岡唯祐, 林哲也
- Journal Title
  
  化学療法の領域 25(5)
  
  Pages: 767-777
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] The defective prophage pool of Escherichia coli O157: prophage-prophage interactions potentiate horizontal transfer of virulence determinants2009
- Author(s)
  Md. Asadulghani, Y. Ogura, T. Ooka, T. Itoh, A. Sawaguchi, A. Iguchi, K. Nakayama, T. Hayashi
- Journal Title
  
  PLoS Pathog. 5(5)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis2009
- Author(s)
  Leopold S.R., (他5名), Ogura Y., Iguchi A., Hayashi T., (他6名)
- Journal Title
  
  Proc Natl Acad Sci USA 106
  
  Pages: 8713-18
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/692009
- Author(s)
  Iguchi A., Thomson N.R., Ogura Y., Saunders D., Ooka T., (他9名), Hayashi, T., (他2名)
- Journal Title
  
  J. Bacteriol 191(1)
  
  Pages: 347-54
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.2009
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 106
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.2009
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 106(42)
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of 0157 and non-0157 enterohemorrhagic Escherichia coli.2009
- Author(s)
  Y.Ogura, T.Ooka, (他7名), K.Kurokawa, T.Tobe, M.Hattori, T.Hayashi
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 106(42)
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli2008
- Author(s)
  Abe, H., (他3名), Ogura, Y., (他2名), Hayashi, T., Tobe, T.
- Journal Title
  
  DNA Res 15
  
  Pages: 25-38
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Y. Ogura, H. Abe, K. Katsura, K. Kurokawa, Asadulghani, A. Iguchi, T. Ooka, K. Nakayama, A. Yamashita, M. Hattori, T. Tobe, T. Hayashi
- Journal Title
  
  J. Bacteriol. 190(21)
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Genomic comparison of the O-antigen biosynthesis gene clusters of Escherichia coli O55 strains belonging to three distinct lineages2008
- Author(s)
  Iguchi, A., Ooka, T., Ogura, Y., Asadulghani, K., Nakayama, G., Frankel, G., Hayashi, T
- Journal Title
  
  Microbioloev 154(2)
  
  Pages: 559-570
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping.2008
- Author(s)
  Ogura, Y., et al.
- Journal Title
  
  J. Bacteriol. 190
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli2008
- Author(s)
  Abe, H., Miyahara, A., Oshima, T., Tashiro, K., Ogura, Y., Kuhara, S., Ogasawara, N., Hayashi, T., Tobe, T
- Journal Title
  
  DNA Res 15(1)
  
  Pages: 25-38
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping.2008
- Author(s)
  Y.Ogura, 他, K.Kurokawa, 他, T.Ooka, 他, T.Hayashi
- Journal Title
  
  J.Bacteriol. 190(21)
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B 171-8 by the combined use of Whole Genome PCR Scanning and fosmid manning2008
- Author(s)
  Ogura, Y., et.al.
- Journal Title
  
  J. Bacteriol 190
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Distribution, functional expression genetic organization of Cif, a phage-encoded type III-secreted effector from enteropathogenic and enterohaemorragic Escherichia coli2008
- Author(s)
  Loukiadis, K., Nobe, R., Herold S., Tramuta, C., Ogura, Y., Ooka, T., Morabito, S., Kerouredan, M., Brugere, H., Schmidt, H., Hayashi, T., Oswald, E
- Journal Title
  
  J. Bacteriol 190(1)
  
  Pages: 275-285
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura Y., (他5名), Ooka T., (他3名), Tobe T., Hayashi T.
- Journal Title
  
  J. Bacteriol 190
  
  Pages: 6948-60
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult2008
- Author(s)
  Oshima, K., Toh, H., Ogura, Y., (他3名), Ooka, T., (他2名), Hayashi, T., (他2名)
- Journal Title
  
  DNA Res 15
  
  Pages: 375-86
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coil strain SEll isolated from a healthy adult.2008
- Author(s)
  K.Oshima, H.Toh, Y.Ogura, 他, T.Ooka, 他, T.Hayashi, K.Itoh, M.Hattori
- Journal Title
  
  DNA Res. 15(6)
  
  Pages: 375-386
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura Y, et.al.
- Journal Title
  
  J. Bacteriol 190(21)
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20790339
[Journal Article] Distribution of stable DnaA-binding sites on the Bacillus Subtilis genome detected using a modified ChIP-chip method2007
- Author(s)
  Ishikawa, S., Ogura, Y., Yoshimura, M., Okumura, H., Cho, E., Kawai, Y., Kurokawa, K., Oshima, T., Ogasawara, N
- Journal Title
  
  DNA Res 14
  
  Pages: 169-181
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  Genome Biol. 8(7)
  
  Pages: 138-138
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] TccP2 of O157:H7 and non-0157 enterohemorrhagic Escherichia coli(EHEC):challenging the dogma of EHEC-induced actin polymerization2007
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  Infect.Immun 75(2)
  
  Pages: 604-612
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Genomic vievv on the evolution of enterohemorrhagic Escherichia coli2007
- Author(s)
  Hayashi, T., Ooka, T., Ogura, Y., Asadulghani
- Journal Title
  
  Evolutionary Biology of Bacterialand Fungal Pathogens
  
  Pages: 407-419
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  Genome Biol. 8(7)
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007
- Author(s)
  Ogura, Y., Ooka, T., (他4名), Tobe, T., (他4名), Hayashi, T.
- Journal Title
  
  Genome Biol 8
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] TccP2-mediated subversion of actin dynamics by EPEC 2 - a distinct evolutionary lineage of enteropathogenic Escherichia coli.2007
- Author(s)
  Whale, A., Hernandes, RT., Ooka, T., Krause, G., Schuller, S., Garmendia, J., Crowther, L., Vieira, MA., Ogura, Y., Phillips, AD., Beutin, L., Gomes, TA., Hayashi, T., Frankel, G
- Journal Title
  
  Microbes Environ 22(3)
  
  Pages: 214-222
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] TccP2 of O157 : H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC) : challenging the dogma of EHEC-induced actin polymerization.2007
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  Infect. Immun. 75(2)
  
  Pages: 604-612
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007
- Author(s)
  Ogura, Y., Ooka Asadulghani., A., Terajima, J, Nougayrede, J-R., Kurokawa, K., Tashiro, K., Tobe, T., Nakayama, K., Kuhara, S., Oswald, E., Watanabe, H., Hayashi, T
- Journal Title
  
  DNARes 14
  
  Pages: 155-168
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, VK., Srivastava, TR, Taylor, TD., Noguchi, D., Mori, H., Ogura, Y., Ehrlich, DS., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T., Hattori, M
- Journal Title
  
  Anaerobe 13
  
  Pages: 220-227
- NAID
  120007121875
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] TccP2 of O1 57 : H7 and non-O157 enterohemorrhagic Escherichia coli(EHEC) : challenging the dogma of EHEC-induced actin p ol ymeri zati on2007
- Author(s)
  Ogura, Y., Ooka, T., Whale, A., Garmendia, J., Beutin, L., Tennant, S., Krause, G., Morabito, S., Chinen, I., Tobe, T., Abe, H., Tozzoli, R., Caprioli, A., Rivas, M., Browne, R. R., Hayashi, T., Frankel, G
- Journal Title
  
  FEMS Microbiol. Lett 271
  
  Pages: 126-135
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] TccP2 of O157: H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC): challenging the dogma of EHEC-induced actin olymerization2007
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  Infect. Immun 75(2)
  
  Pages: 604-612
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] TccP2 of O157:H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC): challenging the dogma of EHEC-induced actin polymerization2007
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  Infect. Immun 75(2)
  
  Pages: 604-612
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kurokawa, K., Itoh, T., Kuwahara, T., (他10名), Ogura, Y., (他4名), Hayashi, T., Hattori, M.
- Journal Title
  
  DNA Res 14
  
  Pages: 169-81
- NAID
  120007121875
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Characterization of tccP2 carried by atypical enteropathogenic Escherichia coli2007
- Author(s)
  Ooka, T., Vieira, MA., Ogura, Y., Beutin, L., Ragione, R. L., van Diemen, P. M., Stevens, M. P., I., Aktan, S., Cawthraw, Best, A., Hemandes, R. T., Krause, G., Gomes, T. A. T, Hayashi, T., Frankel, G
- Journal Title
  
  Microbiology 153
  
  Pages: 1743-1755
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] TccP2 of O157:H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC) : challenging the dogma of EHEC-induced actin polymerization.2007
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  Infect.Immun. 75(2)
  
  Pages: 604-612
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes2006
- Author(s)
  Nakanishi, N., Abe, H., Ogura, Y., Hayashi, T., (他3名), Tobe, T.
- Journal Title
  
  Mol Microbiol 61
  
  Pages: 194-205
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006
- Author(s)
  Y.Ogura, K.Kurokawa, T.OoKa, K.Tashiro, T.Tobe, M.Ohnishi, K.Nakayama, T.Morimoto, J.Terajima, H.Watanabe, S.Kuhara, T.Hayashi
- Journal Title
  
  DNA Res. (in press)
- Data Source
  KAKENHI-PROJECT-16790257
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning2006
- Author(s)
  Ogura, Y., Kurokawa, K., Ooka, T., Tashiro, K., Tobe, T., Ohnishi, M., Nakayama, K., Morimoto, T., Terajima, J., Watanabe, H., Kuhara, S., Hayashi, T
- Journal Title
  
  DNA Res 13
  
  Pages: 3-14
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Complexity of the Genomic Diversity in Entrohaemorrhagic Escherichia coli O157 Revealed by the Combinational Use of the O157 Sakai OligoDNA Microarray and the Whole Genome PCR scanning2006
- Author(s)
  Ogura, Y., Kurokawa K., Ooka, T., Tashiro, K., Tobe, T., (他6名), Hayashi, T.
- Journal Title
  
  DNA Res 13
  
  Pages: 3-14
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  DNA Res. 13
  
  Pages: 3-14
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] ppGpp with DksA controls gene expression in the LEE pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes2006
- Author(s)
  Nakanishi, N., Abe, H., Ogura, Y., Hayashi, T., Tashiro, K., Kuhara, S., Sugimoto, N., Tobe, T
- Journal Title
  
  Mol. Microbiol 61(1)
  
  Pages: 194-205
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli o157 revealed by the combinational use of the o157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning2006
- Author(s)
  Ogura Y., et. al.
- Journal Title
  
  DNA Res. 13
  
  Pages: 3-14
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Complexity of the genomic diversity of entrohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006
- Author(s)
  Ogura, Y., et al.
- Journal Title
  
  DNA Res. (in press)
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.2006
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  DNA Res. 13
  
  Pages: 3-14
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] 大腸菌O157のゲノム研究とその応用.2005
- Author(s)
  大岡唯祐, 小椋義俊, 林哲也
- Journal Title
  
  臨床微生物迅速診断研究会誌(JARMAM) 16
  
  Pages: 179-181
- Data Source
  KAKENHI-PROJECT-17019058
[Journal Article] 大腸菌O157のゲノム研究とその応用2005
- Author(s)
  大岡唯祐, 小椋義俊, 林哲也
- Journal Title
  
  臨床微生物迅速診断研究会誌 16(2)
  
  Pages: 179-181
- Data Source
  KAKENHI-PROJECT-16790257
[Journal Article] 腸管出血性大腸菌のゲノムの特徴2004
- Author(s)
  大岡唯祐, 小椋義俊, 林哲也
- Journal Title
  
  化学療法の領域 20
  
  Pages: 1328-1333
- Data Source
  KAKENHI-PROJECT-14014241
[Journal Article] 腸管出血性大腸菌のゲノム解析2004
- Author(s)
  小椋義俊, 林哲也
- Journal Title
  
  ゲノム医学 4(2)
  
  Pages: 219-224
- Data Source
  KAKENHI-PROJECT-16790257
[Journal Article] 腸管出血性大腸菌のゲノムの特徴2004
- Author(s)
  大岡唯祐, 小椋義俊, 林哲也
- Journal Title
  
  化学療法の領域 20(9)
  
  Pages: 1328-1333
- Data Source
  KAKENHI-PROJECT-16790257
[Journal Article] 腸管出血性大腸菌のゲノム解析2004
- Author(s)
  小椋義俊, 林哲也
- Journal Title
  
  ゲノム医学 4
  
  Pages: 219-224
- Data Source
  KAKENHI-PROJECT-14014241
[Journal Article] Complexity of the genomic diversity of entrohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  DNA Research (in press)
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-14014241
[Journal Article] Complexity of the genomic diversity of entrohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning.
- Author(s)
  Y.Ogura, et al.
- Journal Title
  
  DNA Res. (in press)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-14014241
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡邊治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Filing Date
  2006-06-02
- Acquisition Date
  2006-06-13
- Data Source
  KAKENHI-PROJECT-17019058
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡邊治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Filing Date
  2006-06-02
- Acquisition Date
  2006-06-13
- Data Source
  KAKENHI-PROJECT-18310132
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡辺治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Acquisition Date
  2006-06-13
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡辺治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Filing Date
  2006-06-02
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Escherichia属細菌の動物適応がもたらすヒト病原性2023
- Author(s)
  小椋義俊
- Organizer
  第９６回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20H03486
[Presentation] 下水処理水中に生残するESBL大腸菌から河川由来の志賀毒素産生性大腸菌への薬剤耐性の伝播2023
- Author(s)
  謝暉，小椋義俊，鈴木祥広
- Organizer
  第 57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-23K21762
[Presentation] Transmission of Resistance from ESBL Producing Coliforms inTreated Wastewater to Susceptible Escherichia coli in a River Using Filter Mating Method2022
- Author(s)
  H. Xie, Y. Ogura, Y. Suzuki
- Organizer
  Water and Environment Technology Conference (WET2022)
- Data Source
  KAKENHI-PROJECT-23K21762
[Presentation] 下水処理水中に生残するESBL大腸菌群から河川由来の感受性大腸菌への薬剤耐性の伝播2022
- Author(s)
  謝暉, 小椋義俊, 鈴木祥広
- Organizer
  第 56 回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-23K21762
[Presentation] Development of High Sensitive Detection and Quantification of Free Extracellular DNA Using Colloid Adsorption and Foam Concentration2022
- Author(s)
  S. Tamai, M. Okuno, Y. Ogura, K. Nukazawa, Y. Suzuki
- Organizer
  Water and Environment Technology Conference (WET2022)
- Data Source
  KAKENHI-PROJECT-23K21762
[Presentation] Comparative genomic analysis of the pink pigmented facultative methylotrophs (PPFMs)2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Akio Tani
- Organizer
  2021 Galaxy Community Conference (GCC2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 大腸菌の宿主適応と病原性進化2021
- Author(s)
  小椋義俊
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20K21527
[Presentation] Comparative genomics and phenotyping approach on Methylobacterium species.2021
- Author(s)
  Alessa O., Ogura Y., Fujitani Y., Hayashi T., Sahin N., Tani A.
- Organizer
  Phyllosphere Fortnight 2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 感染制御基盤の構築を目指した病原性大腸菌の大規模比較ゲノム研究2021
- Author(s)
  小椋義俊
- Organizer
  感染症学会、化学療法学会合同学会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21527
[Presentation] 感染制御基盤の構築を目指した病原性大腸菌の大規模比較ゲノム研究2021
- Author(s)
  小椋義俊
- Organizer
  感染症学会、化学療法学会合同学会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03486
[Presentation] 大腸菌の宿主適応と病原性進化2021
- Author(s)
  小椋義俊
- Organizer
  第９４回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-20H03486
[Presentation] Survival of extended-spectrum beta-lactamase producing-Escherichia coli in municipal wastewater under aerobic condition2021
- Author(s)
  ie, H., Ogura, Y. and Suzuki, Y.
- Organizer
  Water and Environment Technology Conference (WET2021)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K21762
[Presentation] Genomic insights into the PPFMs phylogeny and unique features2021
- Author(s)
  Ola Alessa, Yoshitoshi Ogura, Yoshiko Fujitani, Hideto Takami, Tetsuya Hayashi, Nurettin Sahin, Akio Tani
- Organizer
  日本農芸化学会2021年度西日本・中四国・関西支部合同大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] キャプチャーシーケンス法によるリケッチアの多様性と宿主マダニとの系統遺伝学的関係の解析2020
- Author(s)
  笠間健太郎、藤田博己、山本正悟、高野愛、後藤恭宏、小椋義俊、安藤秀二、林哲也
- Organizer
  第14回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 集団下痢症事例から分離された病原因子不明大腸菌のゲノム解析2020
- Author(s)
  小椋義俊，佐々木麻里，成松浩志，石丸海，有水遥子，後藤恭宏，中村佳司，林哲也
- Organizer
  第９３回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] ゲノムから見た大腸菌病原因子の真の役割2019
- Author(s)
  小椋義俊、有水遥子、林哲也
- Organizer
  第６６回トキシンシンポジウム
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] Illegitimate translation from frameshift mutations created by CRISPR-Cas9 genome editing rescues the lethality of Gli3 KO phenotype in the mouse.2019
- Author(s)
  Gondo Y, Makino S, Inoue K, Hirose M, Fukumura R, Ogura A
- Organizer
  The 13th International Workshop on Advanced Genomics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome analysis of bovine commensal E. coli; novel insights into the evolutional pathway of EHEC2018
- Author(s)
  Yoshitoshi Ogura
- Organizer
  第91回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16K15278
[Presentation] Emergence and evolution of Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) from bovine commensal E. coli2018
- Author(s)
  Yoshitoshi Ogura
- Organizer
  The Second SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第12回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 水平伝播による細菌の環境適応と病原性進化2018
- Author(s)
  有水遥子、林哲也、小椋義俊
- Organizer
  日本遺伝学会第90回大会
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] マウス腸内への定着に寄与するビフィズス菌遺伝子の網羅的同定に向けたINSeq 法の確立2018
- Author(s)
  久保勇貴、中島森、中川路伸吾、阪中幹祥、小椋義俊、吉本真、吉田圭佑、清水（肖）金忠、小田巻俊孝、林哲也、横田篤、吹谷智
- Organizer
  第70回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] The population structure of enterohemorrhagic Escherichia coli O26:H11 with recent and repeated stx2 acquisition in multiple lineages2018
- Author(s)
  Yoshitoshi Ogura, Kazuko Seto, Shuji Yoshino, Junko Isobe, Yoshiki Etoh, Keiko Kimata, Eriko Maeda, Denis Pierard, Masahiro Kusumoto, Masato Akiba, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques G. Mainil, and Tetsuya Hayashi
- Organizer
  10th international symposium on Shiga toxin producing Escherichia coli infections
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] インドー太平洋のオニヒトデから見つかった未知の菌のゲノム解析2018
- Author(s)
  湯淺英知, 梶谷嶺, 後藤恭宏, 和田直久, 吉村大, 小椋義俊, 林哲也, 安田仁奈, 伊藤武彦
- Organizer
  第21回日本サンゴ礁学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ビフィズス菌の腸内生存・定着機構の解明に向けたINSeq法の確立とその評価2018
- Author(s)
  中島森、久保勇貴、中川路伸吾、阪中幹祥、小椋義俊、吉本真、吉田圭佑、清水（肖）金忠、小田巻俊孝、林哲也、横田篤、吹谷智
- Organizer
  日本乳酸菌学会2018年度大会
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] トランスポゾン変異株集団を用いたビフィズス菌の腸内生存戦略の解明手法の確立2018
- Author(s)
  中島　森，中川路　伸吾，阪中　幹祥，小椋　義俊，林　哲也，横田　篤，吹谷　智
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] 腸管出血性大腸菌の出現プロセス解明を目指したウシ・ヒト常在大腸菌の大規模比較ゲノム解析2018
- Author(s)
  中島遥子、桐野有美、宇野浩一、佐藤寿夫、佐藤光彦、吉野修司、大岡唯祐、後藤恭宏、谷沢靖洋、中村保一、井口純、石原朋子、大西真、林哲也、小椋義俊
- Organizer
  第13回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] ウシとヒトの常在性大腸菌の大規模比較ゲノム解析による腸管出血性大腸菌出現プロセスの解明2018
- Author(s)
  有水遥子、林哲也、小椋義俊
- Organizer
  第91回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] Genome analysis of bovine commensal E. coli; novel insights into the evolutional pathway of EHEC2018
- Author(s)
  Yoshitoshi Ogura
- Organizer
  第91回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] ヒト由来ビフィズス菌Bifidobacterium longum 105-Aが通常飼育マウス腸内に定着可能な飼育試験系の確立2018
- Author(s)
  嶋田みな、川瀬陽平、園山慶、小椋義俊、林哲也、横田篤、吹谷智
- Organizer
  日本乳酸菌学会2018年度大会
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] The population structure of enterohemorrhagic Escherichia coli 026 : H11 with recent and repeated stx2 acquisition in multiple lineages2018
- Author(s)
  Yoshitoshi Ogura, Kazuko Seto, Shuji Yoshino, Junko Isobe, Yoshiki Etoh, Keiko Kimata, Eriko Maeda, Denis Piérard, Masahiro Kusumoto, Masato Akiba, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques G. Mainil, and Tetsuya Hayashi
- Organizer
  10th international symposium on Shiga toxin producing Escherichia coli infections
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] オニヒトデから見つかった謎の共在菌について2018
- Author(s)
  和田直久, 湯淺英知, 梶谷嶺, 後藤恭弘, 小椋義俊, 吉村大, 豊田敦, Sen-Lin TANG, 東村幸浩, Hugh SWEATMAN, Zac FORSMAN, Omri BRONSTEIN, Gal EYAL, Nalinee THONGTHAM, 林哲也, 伊藤武彦, 安田仁奈
- Organizer
  第21回日本サンゴ礁学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Emergence and evolution of Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) from bovine commensal E. coli2018
- Author(s)
  Yoshitoshi Ogura
- Organizer
  "The Second SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H04077
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第91回日本細菌学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 10X-Linked-reads、Mate-pairを活用したメタゲノムアセンブリ手法の開発2018
- Author(s)
  梶谷嶺, 小椋義俊, 後藤恭宏, 林哲也, 伊藤武彦
- Organizer
  第12回ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 大規模比較ゲノム解析による腸管出血性大腸菌出現プロセスの解明2017
- Author(s)
  中島遥子、桐野有美、宇野浩一、佐藤寿夫、佐藤光彦、西田留梨子、吉野修司、大岡唯祐、後藤恭宏、谷沢靖洋、中村保一、井口純、石原朋子、大西真、林哲也、小椋義俊
- Organizer
  第20回腸管出血性大腸菌感染症研究会
- Place of Presentation
  富山県民共生センターサンフォルテ２階ホール
- Year and Date
  2017-11-10
- Data Source
  KAKENHI-PROJECT-16K15278
[Presentation] 消化管における生存と定着に寄与するビフィズス菌遺伝子の網羅的同定に向けたINSeq法の確立2017
- Author(s)
  中島　森，中川路　伸吾，阪中　幹祥，小椋　義俊，林　哲也，横田　篤，吹谷　智
- Organizer
  第69回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] 大規模比較ゲノム解析による腸管出血性大腸菌の起源と出現プロセスの解明2017
- Author(s)
  中島遥子、桐野有美、宇野浩一、佐藤寿夫、佐藤光彦、西田留梨子、吉野修司、大岡唯祐、後藤恭宏、谷沢靖洋、中村保一、井口純、石原朋子、大西真、林哲也、小椋義俊
- Organizer
  第11回日本ゲノム微生物学会年会
- Place of Presentation
  慶應義塾大学　湘南藤沢キャンパス
- Year and Date
  2017-03-02
- Data Source
  KAKENHI-PROJECT-16K15278
[Presentation] Examining genetic divergence of closely related Crown-of-Thorns starfish species between Indian and Pacific Ocean using whole genome data.2017
- Author(s)
  Hideaki Yuasa, Rei Kajitani, Kazuki Takahashi, Dai Yoshimura, Takehiko Itoh, Yoshitoshi Ogura, Tetuya Hayashi, Zac Forsman, Nalinee Thongtham, Niphon Phongsuwan, Coralie Taquet, Marc Taquet, Nina Yasuda
- Organizer
  The Third Asia Marine Biology Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 国内外で分離された521株の腸管出血性大腸菌O26の全ゲノム系統解析と病原遺伝子レパートリー解析2017
- Author(s)
  小椋義俊、黒木真理子、吉野修司、木全恵子、磯部順子、勢戸和子、前田詠里子、江藤良樹、楠本正博、秋庭正人、石嶋希、李謙一、伊豫田淳、大西真、大岡唯祐、後藤恭宏、林哲也
- Organizer
  第９０回　日本細菌学会総会
- Place of Presentation
  仙台国際センター
- Year and Date
  2017-03-19
- Data Source
  KAKENHI-PROJECT-16K15278
[Presentation] Illegitimate translation revealed by CRISPR-Cas9 genome editing : The genome-edited proteins rescue the knockout phenotype.2017
- Author(s)
  Yoichi Gondo, Shigeru Makino, Kimiko Inoue, Michiko Hirose, Yuichi Ishitsuka, Ryutaro Fukumura, Atsuo Ogura
- Organizer
  The 12th International Workshop on Advanced Genomics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キットNextera XTによるシーケンスバイアスと細菌のGC含量の関係2017
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  NGS現場の会第5回研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 消化管における生存と定着に寄与するビフィズス菌遺伝子の探索系の構築2017
- Author(s)
  中川路伸吾、中島森、阪中幹祥、小椋義俊、林哲也、横田篤、吹谷智
- Organizer
  公益社団法人日本農芸化学会 2017年度大会
- Place of Presentation
  京都女子大学（京都府・京都市）
- Year and Date
  2017-03-17
- Data Source
  KAKENHI-PROJECT-16H04893
[Presentation] Illegitimate translation from out-of-frame alleles created by CRISPR-Cas9 rescues KO lethality.2017
- Author(s)
  Shigeru Makino, Kimiko Inoue, Masaru Tamura, Michiko Hirose, Yuichi Ishitsuka, Ryutaro Fukumura, Shigeru Wakana, Atsuo Ogura, Yoichi Gondo
- Organizer
  AMMRA and AMPC Meeting 2017
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Identification of high Stx2-producing Escherichia coli O157 clades by WGS-based phylogenetic analysis2016
- Author(s)
  Yoshitoshi Ogura, Jun Yatsuyanagi, Kazuko Seto, Hiroshi Narimatsu, Kikuyo Ogata, Keiko Kimata, Junko Isobe, Eriko Maeda, Yoshiki Etoh, Mitsuhiro Kameyama, Shakhinur Islam Mondal, Md Rakibul Islam, Tadasuke Ooka, Yasuhiro Gotoh, Kazunori Murase, Makoto Ohnishi, and Tetsuya Hayashi
- Organizer
  SMBE Satellite Workshop on Genome Evolution in Pathogen Transmission and Disease
- Place of Presentation
  Shiga Lake Hotel, Nagano, Japan
- Year and Date
  2016-02-22
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] 腸管出血性大腸菌O157のStx2高産生性に関わる遺伝的要因の解明2016
- Author(s)
  小椋義俊、西田留梨子、中島瑶子、片平雄之、後藤恭宏、大西真、林哲也
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪国際交流センター
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] WGS-based phylogenetic analyses of O157 enterohaemorrhagic Escherichia coli (EHEC) strains and bovine- and human-associated E. coli strains to elucidate the evolutionary pathway of EHEC2016
- Author(s)
  Yoshitoshi Ogura
- Organizer
  International Symposium on Genome Microbiology
- Place of Presentation
  東京工業大学大岡山キャンパス
- Year and Date
  2016-03-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015
- Author(s)
  Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
- Organizer
  57th ASH Annual Meeting
- Place of Presentation
  Orlando, FL, USA
- Year and Date
  2015-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ファイロゲノミクスによる腸管出血性大腸菌の優勢系統群および志賀毒素高産生性系統群の同定2014
- Author(s)
  小椋義俊、桂啓介、伊藤武彦、Mainil Jacques、吉野修司、磯部順子、勢戸和子、江藤良樹、富永潔、緒方喜久代、楠本正博、黒木真理子、木全恵子、前田詠里子、亀山光博、成松浩志、秋庭正人、矢端順子、後藤恭宏、大岡唯祐、林哲也
- Organizer
  第８回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] Asian Microbiome Project: 次世代シーケンサーを用いたアジア人腸内細菌叢のプロファイル化2014
- Author(s)
  東佳那子、百田理恵、山本麻寿紗、林哲也、小椋義俊、黒川顕、豊田敦、加藤和人、AMP study group、園元謙二、渡辺幸一、Lee Yuan Kun、中山二郎
- Organizer
  日本生物工学会　第21回九州支部熊本大会
- Place of Presentation
  熊本大学
- Year and Date
  2014-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ファイロゲノミクスによる腸管出血性大腸菌の優勢系統群および志賀毒素高産生性系統群の同定2014
- Author(s)
  小椋義俊、桂啓介、伊藤武彦、Mainil Jacques、吉野修司、磯部順子、勢戸和子、江藤良樹、富永潔、緒方喜久代、楠本正博、黒木真理子、木全恵子、前田詠里子、亀山光博、成松浩志、秋庭正人、矢端順子、後藤恭宏、大岡唯祐、林哲也
- Organizer
  第８回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PUBLICLY-25125718
[Presentation] Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.2014
- Author(s)
  Y. Ogura, T. Hayashi
- Organizer
  第８７回日本細菌学会総会
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PUBLICLY-25125718
[Presentation] 微生物ゲノム研究、この13年間を振り返る（未来開拓、ゲノム特定、ゲノム支援を経験して）2014
- Author(s)
  小椋義俊
- Organizer
  第8回日本ゲノム微生物学会若手の会研究会
- Place of Presentation
  静岡市
- Year and Date
  2014-09-28
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.2014
- Author(s)
  Y. Ogura, T. Hayashi
- Organizer
  第８７回日本細菌学会総会
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.2014
- Author(s)
  Y. Ogura, T. Hayashi
- Organizer
  第８７回日本細菌学会総会
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 高解像度系統解析による腸管出血性大腸菌O157のStx2高産生性系統の同定2013
- Author(s)
  小椋義俊, Md Rakibul Islam, 真子俊博, 大岡唯祐, 大西真, 林哲也
- Organizer
  第86回日本細菌学会総会
- Place of Presentation
  千葉
- Year and Date
  2013-03-18
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] 腸管出血性大腸菌O26におけるゲノムアダプテーション解析2013
- Author(s)
  小椋義俊, 桂啓介, 伊藤武彦, Mainil Jacques , 吉野修司, 磯部順子, 勢戸和子, 江藤良樹, 黒木真理子, 木全恵子, 前田詠里子, 後藤恭宏, 大岡唯祐, 林哲也
- Organizer
  第7回日本ゲノム微生物学会年会
- Place of Presentation
  長浜
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] 高解像度系統解析による腸管出血性大腸菌O157のStx2高産生性系統の同定2013
- Author(s)
  小椋義俊, Md Rakibul Islam, 真子俊博, 大岡唯祐, 大西真, 林哲也
- Organizer
  第86回日本細菌学会総会
- Place of Presentation
  千葉
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] 腸管出血性大腸菌O26におけるゲノムアダプテーション解析2013
- Author(s)
  小椋義俊, 桂啓介, 伊藤武彦, Mainil Jacques , 吉野修司, 磯部順子, 勢戸和子, 江藤良樹, 黒木真理子, 木全恵子, 前田詠里子, 後藤恭宏, 大岡唯祐, 林哲也
- Organizer
  第7回日本ゲノム微生物学会年会
- Place of Presentation
  長浜
- Year and Date
  2013-03-08
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] O157 Stx2 phageの包括的ゲノム比較・機能解析により明らかとなったStx2高産生型phagenの存在2012
- Author(s)
  小椋義俊, Md. Rakibul Islam, 真子俊博, 大岡唯祐, 大西真, 林哲也
- Organizer
  第16回腸管出血性大腸菌感染症研究会
- Place of Presentation
  秋田
- Year and Date
  2012-07-19
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] Comparative genomics of Stx2 prophages in O157:H72012
- Author(s)
  Y. Ogura, T. Mako, T. Ooka, M. Ohnishi, T. Hayashi
- Organizer
  VTEC 2012: 8^th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections
- Place of Presentation
  Amsterdam, The Netherlands.
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] 既存のソフトウエアを駆使した実験研究者による微生物ゲノム情報解析2012
- Author(s)
  小椋義俊
- Organizer
  第85回日本細菌学会総会
- Place of Presentation
  長崎
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] Comparative genomics of Stx2 prophages in O157:H72012
- Author(s)
  Y. Ogura, T. Mako, T. Ooka, M. Ohnishi, T. Hayashi
- Organizer
  8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections
- Place of Presentation
  Amsterdam
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] O157 Stx2 phageの包括的ゲノム比較・機能解析により明らかとなったStx2高産生型phagenの存在2012
- Author(s)
  小椋義俊, Md. Rakibul Islam, 真子俊博, 大岡唯祐, 大西真, 林哲也
- Organizer
  第16回腸管出血性大腸菌感染症研究会
- Place of Presentation
  秋田
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] 既存のソフトウエアを駆使した実験研究者による微生物ゲノム情報解析2012
- Author(s)
  小椋義俊
- Organizer
  第85回日本細菌学会総会
- Place of Presentation
  長崎
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] Comparative genomics of Stx2 prophages in O157:H72012
- Author(s)
  Y. Ogura, T. Mako, T. Ooka, M. Ohnishi, T. Hayashi
- Organizer
  8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections
- Place of Presentation
  Amsterdam
- Year and Date
  2012-05-06
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] 腸管侵入性大腸菌のゲノム解析2012
- Author(s)
  小椋義俊,大岡唯祐,磯部順子,河野喜美子, 松本昌門, 勢戸和子, 岩出義人,緒方喜久代, 林哲也
- Organizer
  第6回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] 腸管侵入性大腸菌のゲノム解析2012
- Author(s)
  小椋義俊, 他
- Organizer
  第6回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] 病原性大腸菌O157の志賀毒素産生性に関わる遺伝的特性の解明2011
- Author(s)
  小椋義俊, 他
- Organizer
  第5回日本ゲノム微生物学会年会
- Place of Presentation
  仙台市
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析2011
- Author(s)
  小椋義俊
- Organizer
  第5回細菌学若手コロッセウム
- Place of Presentation
  高知
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] Transcriptome sequencing of S.venezuelensis, an animal parasitic nematode2011
- Author(s)
  E.Nagayasu, Y.Ogura, T.Ito, A.Yoshida, G.Chakraborty, T.Hayashi, H.Maruyama
- Organizer
  International union of microbiological societies 2011 congress
- Place of Presentation
  Sapporo, Hokkaido, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Genome and transcriptome sequencing of Strongyloides venezuelensis, an animal parasitic nematode2011
- Author(s)
  E.Nagayasu, Y.Ogura, T.Ito, A.Yoshida, T.Hayashi, H.Maruyama
- Organizer
  45th Annual Japan-US Joint Conference on Parasitic Diseases
- Place of Presentation
  National Institute of Infectious Diseases Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Phylogenetic and intimin-subtyping analysis of enteropathogenic and enterohemorrhagic Escherichia coli strains2011
- Author(s)
  T.Ooka, K.Seto, K.Kawano, H.Kobayashi, Y.Etoh, S.Ichihara, M.Bardiau, N.Kaneko, J.Isobe, K.Yamaguchi, K.Horikawa, Y.Ogura, K.Nakayama, J.Mainil, T.Hayashi
- Organizer
  International union of microbiological societies 2011 congress
- Place of Presentation
  Sapporo, Hokkaido, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Genome sequence analysis of Treponema phagedenis isolated from bovine papillomatous digital dermatitis (PDD)2011
- Author(s)
  Y.Gotoh, K.Yamazaki, Y.Ogura, T.Ooka, T.Yano, K.Oshima, M.Hattori, N.Misawa, T.Hayashi
- Organizer
  International union of microbiological societies 2011 congress
- Place of Presentation
  Sapporo, Hokkaido, Japan
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析2011
- Author(s)
  小椋義俊
- Organizer
  第5回細菌学若手コロッセウム
- Place of Presentation
  高知
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] ゲノム解析から見えてきた腸管出血性大腸菌の病原性進化メカニズム2011
- Author(s)
  小椋義俊
- Organizer
  日本細菌学会関東支部・ICD制度協議会共催「緊急セミナー:腸管出血性大腸菌の今」
- Place of Presentation
  東京(招待講演)
- Year and Date
  2011-08-02
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] ゲノム解析から見えてきた腸管出血性大腸菌の病原性進化メカニズム2011
- Author(s)
  小椋義俊
- Organizer
  日本細菌学会関東支部・ICD制度協議会共催「緊急セミナー:腸管出血性大腸菌の今」
- Place of Presentation
  東京
- Year and Date
  2011-08-02
- Data Source
  KAKENHI-PROJECT-23790478
[Presentation] Hydrogen evolution of Vibrio tritonius sp.nov.2011
- Author(s)
  Y.Matsumura, S.Nakagawa, F.Maruyama, Y.Ogura, T.Hayashi, K.Kurokawa, T.Sawabe
- Organizer
  VIBRIO 2011
- Place of Presentation
  Santiago de Compostela-Spain
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Comparative analysis of STX2 prophages in enterohemorrhagic Escherichia coli O-1572011
- Author(s)
  Y.Ogura, et al
- Organizer
  IUMS 2011(第84回日本細菌学会総会)
- Place of Presentation
  Sapporo
- Year and Date
  2011-09-07
- Data Source
  KAKENHI-PUBLICLY-23125511
[Presentation] 病原性大腸菌O157:H7の志賀毒素変換ファージの比較解析2010
- Author(s)
  小椋義俊, 大西真, 真子俊博, 大岡唯祐, 中山恵介, 林哲也
- Organizer
  第4回ゲノム微生物学会年会
- Place of Presentation
  福岡.
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析2010
- Author(s)
  小椋義俊, 大西真, 真子俊博, 大岡唯祐, 中山恵介, 林哲也
- Organizer
  第83回日本細菌学会総会
- Place of Presentation
  横浜.
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析.2010
- Author(s)
  小椋義俊, 他
- Organizer
  第83回日本細菌学会総会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] 病原性大腸菌0157:H7の志賀毒素変換ファージの比較解析2010
- Author(s)
  小椋義俊, 他
- Organizer
  第4回ゲノム微生物学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] 病原性大腸菌O157:H7の志賀毒素変換ファージの比較解析.2010
- Author(s)
  小椋義俊, 他
- Organizer
  第4回ゲノム微生物学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析2010
- Author(s)
  小椋義俊, 他
- Organizer
  第83回日本細菌学会総会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] 病原性大腸菌O157:H7の志賀毒素変換ファージの比較解析.2010
- Author(s)
  小椋義俊, 他
- Organizer
  第4回ゲノム微生物学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Identification and sequence analysis of the genomic islands of EPEC B171 by fosmid mapping2009
- Author(s)
  小椋義俊, 他
- Organizer
  第82回日本細菌学会総会
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定.2009
- Author(s)
  小椋義俊, 他
- Organizer
  日本分子生物学会第9回春季シンポジウム
- Place of Presentation
  宮崎
- Year and Date
  2009-05-11
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定.2009
- Author(s)
  小椋義俊, 他
- Organizer
  日本分子生物学会第9回春季シンポジウム
- Place of Presentation
  宮崎
- Year and Date
  2009-05-11
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定2009
- Author(s)
  小椋義俊, 他
- Organizer
  第3回ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2009-03-06
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Identification and sequence analysis of the genomic islands of EPEC B171 by fosmid mapping2009
- Author(s)
  小椋義俊, 他
- Organizer
  第82回日本細菌学会総会
- Place of Presentation
  名古屋
- Year and Date
  2009-03-12
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Fosmid mapping 法と Whole genome PCR scanning 法を用いた腸管病原性大腸菌B171株の genomic island の網羅的な同定と配列決定2009
- Author(s)
  小椋義俊, 他
- Organizer
  日本分子生物学会第9回春季シンポジウム
- Place of Presentation
  宮崎
- Year and Date
  2009-05-11
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Identification and sequence analysis of the genomic islands of EPEC B 171by fosmid mapping2009
- Author(s)
  小椋義俊, 他
- Organizer
  第82回日本細菌学会総会
- Place of Presentation
  名古屋
- Year and Date
  2009-03-12
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定2009
- Author(s)
  小椋義俊, 他
- Organizer
  第3回ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2009-03-06
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Fosmid mapping法とWholegenome PCR scaming法を用いた腸管病原性大腸菌B171株のgenomicislandの網羅的な同定と配列決定2009
- Author(s)
  小椋義俊, 他
- Organizer
  第3回ゲノム微生物学会年会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] 腸管出血性大腸菌の進化におけるファージの役割2008
- Author(s)
  小椋義俊(シンポジスト)
- Organizer
  第81回日本細菌学会総会
- Place of Presentation
  京都
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura, Y., et.al.
- Organizer
  第43回日米コレラ細菌性腸管感染症専門部会
- Place of Presentation
  Fukuoka
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura. Y., et.al.
- Organizer
  第43回日米コレラ細菌性腸管感染症専門部会
- Place of Presentation
  Fukuoka
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura, Y., et al.
- Organizer
  第43回日米コレラ細菌性腸管感染症専門部会
- Place of Presentation
  Fukuoka
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Systematic identification and sequence analysis of genomic islands of enteropathogenic Escherichia coli strain B171-8 by the combinational use of Whole Genome PCR Scanning and fosmid mapping.2008
- Author(s)
  Ogura, Y., et al.
- Organizer
  日米コレラ日本側総会
- Place of Presentation
  大阪
- Year and Date
  2008-07-30
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] 腸管出血性大腸菌(O26,O111,O103)の全ゲノム解析2008
- Author(s)
  小椋義俊、その, 他
- Organizer
  第2回日本ゲノム微生物学会年会
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] Systematic identification and sequence analysis of genomic islands of enteropathogenic Escherichia coli strain B 171-8 by the combinational use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura, Y., et.al.
- Organizer
  日米コレラ日本側総会
- Place of Presentation
  大阪
- Year and Date
  2008-07-30
- Data Source
  KAKENHI-PROJECT-17019058
[Presentation] 腸管出血性大腸菌(O26,O111,O103)の全ゲノム解析2008
- Author(s)
  小椋義俊, その他
- Organizer
  第2回日本ゲノム微生物学会年会
- Place of Presentation
  大阪
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] 腸管出血性大腸菌の進化におけるファージの役割2008
- Author(s)
  小椋義俊(シンポジスト)
- Organizer
  第81回日本細菌学会総会
- Place of Presentation
  京都
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Systematic identification and sequence analysis of genomic islands of enteropathogenic Escherichia coli strain B171-8 by the combinational use of Whole Genome PCR Scanning and fosmid mapping2008
- Author(s)
  Ogura Y, et.al.
- Organizer
  日米コレラ日本側総会
- Place of Presentation
  大阪
- Year and Date
  2008-07-30
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] EHEC O157とnon-O157 EHEC(O26,O111,O103)の比較ゲノム解析2007
- Author(s)
  小椋義俊, その他
- Organizer
  第80回日本細菌学会総会
- Place of Presentation
  大阪
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kuwahara, T., Kurokawa, K., Itoh, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V. K., Srivastava, T.P., Taylor, T. D., Noguchi, H., Mori, H., Ogura, Y., Ehrlich, D. S., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T., Hattori, M
- Organizer
  The 7th International Workshop on Advanced Genomics
- Place of Presentation
  Tpkyo
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] 腸管出血性大腸菌ゲノムの比較解析2007
- Author(s)
  小椋義俊, その他
- Organizer
  第1回日本ゲノム微生物学会年会
- Place of Presentation
  木更津
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Comparative genome analysis of non-O157 enterohemorrhagic Escherichia coli strains2006
- Author(s)
  Ogura, Y., Ooka., T Asadulghani, Iguchi, A., Nakayama, K., Hayashi., T
- Organizer
  The 41st Joint Conference US-Japan C oop erative Medical Science Program Cholera Panel
- Place of Presentation
  Gifu.
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Comparative genome analysis of non-O157 enterohemorrhagic Escherichia coli strains2006
- Author(s)
 Ogura, Y., et. al.
- Organizer
 The 41<st>Joint Conference US-Japan Cooperative Medical Science Program Cholera Panel
- Place of Presentation
 Gifu
- Description
 「研究成果報告書概要(和文)」より
- Data Source
 KAKENHI-PROJECT-18310132
[Presentation] Comparative genome analysis of O157 and non-O157 enterohemorrhagic Escherichia coli strains using the whole genome PCR scanning and the O157 oligoDNA microarray2006
- Author(s)
  Ogura, Y., Ooka, K., Kurokawa, K., Terajima, J., Nakayama, K., Watanabe, H., Tobe, T., Hayashi., T
- Organizer
  VTEC 2006 Melbourne(6th International Symposium on Shiga Toxin(Verocyt otoxin)-Producing Escherichia coli Infections)
- Place of Presentation
  Melbourne
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] EHECゲノムの比較解析と全ゲノム解読の進捗状況2006
- Author(s)
  小椋義俊(シンポジスト)
- Organizer
  第10回腸管出血性大腸菌感染症シンポジウム
- Place of Presentation
  東京
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Comparative genome analysis of O157 and non-O157 enterohemorrhagic Escherichia coli strains using the whole genome PCR scanning and the O157 oligoDNA microarray2006
- Author(s)
  Ogura, Y., et. al.
- Organizer
  VTEC 2006 Melbourne(6th International Symposium on Shiga Toxin(Verocytotoxin)-Producing Escherichia coli Infections)
- Place of Presentation
  Melbourne
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] The mechanism of genomic diversification in Enterohemorrhagic E. coli O157 : H72006
- Author(s)
  Ooka, T, Ogura, Y., Nakayama, K., Kurokawa, K., Ohnishi, M., Terajima, J., Watanabe, H., Hayashi., T
- Organizer
  VTEC 2006 Melbourne(6th International Symposium on Shiga Toxin(Verocyt otoxin) -Producing Escherichia coli Infections)
- Place of Presentation
  October, Melbourne.
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] ラムダファージの自然環境中における生存戦略と大腸菌との共進化
- Author(s)
  小椋義俊、林哲也
- Organizer
  第88回日本細菌学会
- Place of Presentation
  長良川国際会議場（岐阜県岐阜市）
- Year and Date
  2015-03-26 – 2015-03-28
- Data Source
  KAKENHI-PUBLICLY-25125718
[Presentation] 腸管出血性大腸菌O157の志賀毒素ファージの比較解析
- Author(s)
  小椋義俊, 他
- Organizer
  第83回日本細菌学会総会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-20790339
[Presentation] ヒトおよびウシ由来腸管出血性大腸菌O26のファイロゲノミクス解析
- Author(s)
  小椋義俊、桂啓介、伊藤武彦、Mainil Jacques 、吉野修司、磯部順子、勢戸和子、江藤良樹、楠本正博、黒木真理子、木全恵子、前田詠里子、秋庭正人、後藤恭宏、大岡唯祐、林哲也
- Organizer
  環境微生物学会合同大会
- Place of Presentation
  アクトシティ浜松コングレスセンター（静岡県浜松市）
- Year and Date
  2014-10-21 – 2014-10-24
- Data Source
  KAKENHI-PUBLICLY-25125718
[Presentation] ヒトおよびウシ由来腸管出血性大腸菌O26のファイロゲノミクス解析
- Author(s)
  小椋義俊、桂啓介、伊藤武彦、Mainil Jacques 、吉野修司、磯部順子、勢戸和子、江藤良樹、楠本正博、黒木真理子、木全恵子、前田詠里子、秋庭正人、後藤恭宏、大岡唯祐、林哲也
- Organizer
  環境微生物学会合同大会
- Place of Presentation
  アクトシティ浜松コングレスセンター（静岡県浜松市）
- Year and Date
  2014-10-21 – 2014-10-24
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] 微生物ゲノム研究、この13年間を振り返る（未来開拓事業、ゲノム特定、ゲノム支援を経験して）
- Author(s)
  小椋義俊
- Organizer
  第８回日本ゲノム微生物学会若手の会
- Place of Presentation
  ろうきん研修所富士センター（静岡県駿東郡小山町）
- Year and Date
  2014-09-28 – 2014-09-29
- Invited
- Data Source
  KAKENHI-PROJECT-25460542
[Presentation] ラムダファージの自然環境中における生存戦略と大腸菌との共進化
- Author(s)
  小椋義俊、林哲也
- Organizer
  第88回日本細菌学会
- Place of Presentation
  長良川国際会議場（岐阜県岐阜市）
- Year and Date
  2015-03-26 – 2015-03-28
- Data Source
  KAKENHI-PROJECT-25460542

1. HAYASHI Tetsuya (10173014)

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108. YONEZAWA Akinori

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109. YOSHIKAWA Hiroshi

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110. YOSHIDA Mitsuaki

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111. INOKO Hidetoshi

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112. TODA Tatsushi

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113. INAZAWA Johji

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114. GOJOBORI Takashi

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115. URUSHIHARA Hideko

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116. TAKEDA Hiroyuki

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117. SHIROISHI Toshihiko

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118. ITOH Takashi

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119. SATOH Noriyuki

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125. FUKUYO Masaki

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127. KAWAHARA Koichi

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154. 岩下華子

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155. 三澤尚明

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Ogura Yoshitoshi 小椋 義俊

OGURA Yoshitoshi 小椋 義俊

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Identification of novel pathotypes of diarrheal Escherichia coli by analyzing clinical isolates in which representative virulence genes for known pathotypes were not detected.Principal Investigator

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Analysis of emerging process of enterohemorrhagic escherichia coliPrincipal Investigator

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Emerging process of Enterohemorrhagic Escherichia coli revealed by a large-scale genome analysisPrincipal Investigator

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mechanism of diversification of shiga toxin-encoding phage, from the ecological aspectPrincipal Investigator

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Ogura Yoshitoshi 小椋義俊

OGURA Yoshitoshi 小椋義俊