• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Imoto Seiya  井元 清哉

ORCIDConnect your ORCID iD *help
… Alternative Names

IMOTO Seiya  井元 清哉

Less
Researcher Number 10345027
Other IDs
Affiliation (Current) 2025: 東京大学, 医科学研究所, 教授
Affiliation (based on the past Project Information) *help 2015 – 2024: 東京大学, 医科学研究所, 教授
2007 – 2015: The University of Tokyo, 医科学研究所, 准教授
2008: 東京大学, 医科学研究所・ヒトゲノム解析センター, 准教授
2007: 東京大学, 医科学研究所, 助教
2007: 東京大学, 医科学研究所・ヒトゲノム研究系, 准教授 … More
2006: 東京大学, 医科学研究所, 助教授
2005 – 2006: 東京大学, 医科学研究所・ヒトゲノム解析センター, 助手
2003 – 2005: 東京大学, 医科学研究所, 助手 Less
Review Section/Research Field
Principal Investigator
Statistical science / Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics / Bioinformatics/Life informatics
Except Principal Investigator
Bioinformatics/Life informatics / Complex systems / Biological Sciences / Basic Section 49020:Human pathology-related / Medium-sized Section 54:Internal medicine of the bio-information integration and related fields / Medium-sized Section 56:Surgery related to the biological and sensory functions and related fields … More / Basic Section 49030:Experimental pathology-related / Basic Section 55020:Digestive surgery-related / Statistical science / Medium-sized Section 53:Organ-based internal medicine and related fields / Complex Systems Disease Theory / Life / Health / Medical informatics / Intelligent informatics / Statistical science Less
Keywords
Principal Investigator
ベイズモデル / HLA / 多変量解析 / ベイジアンネットワーク / ノンパラメトリック回帰 / メタゲノム診断AI / ショットガンメタゲノム解析 / 宿主寄生体感染関係 / 腸内ウイルス叢 / 腸内細菌叢 … More / AI / メタゲノム解析 / ネオ抗原 / 免疫システム / シークエンスデータ / 階層ベイズモデル / 免疫ゲノム / マルコフ連鎖モンテカルロ / がんゲノム / HLA遺伝子型 / 遺伝子ネットワーク / 遺伝子発現 / データ統合 / オミックス解析 / システム的解析 / トランスクリプトーム / オミクスデータ解析 / 漢方薬効 / システム数理解析 / パンデミック / インフルエンザ / 数理モデル / ジョイントモデル / エージェントシミュレーション / マクロシミュレーション / 感染症拡大の数理モデル / 予防 / エージェントベースシミュレーション / 予測モデル / 感染症シミュレーション / 階層モデル / 情報統合 / ヘテロデータ / 超高次元データ / ロバスト / ベイズ統計 / 異種データ統合 / 高次元データ解析 / 確立ネットワーク / ゲノム情報 / バイオ統計 / バイオマーカー / 確率ネットワーク / タンパク質間相互作用データ / データ同化 / マイクロアレイデータ / クラスタ分析 / グラフィカルモデル / ベイズアプローチ / 情報量規準 / 関数データ解析 / 高次元データ / クラスタリング / ベイジアンモデリング … More
Except Principal Investigator
遺伝子ネットワーク / シミュレーション / がん / ベイジアンネットワーク / マイクロアレイ / システム生物学 / ゲノム / マイクロアレイ解析 / タンパク質相互作用 / simulation / gene network / ペトリネット / 統計的モデリング / バイオインフォマティクス / プロテオーム / 状態空間モデル / システムバイオロジー / タンパク質ネットワーク / パスウェイモデリング / 肺癌 / NGS / 分子ネットワークモデル / バクテリオファージ / メタゲノム / ファージ療法 / 改変ファージ / 次世代ファージ療法 / メタゲノム解析 / シークエンシング / モデル / クロナリティ / オミクス解析 / マルチオミクス / 全ゲノム / エンハンサー / 全ゲノム解析 / 有毛細胞白血病 / Virtual dissection / PDXマウス / 膵癌 / がん微小環境 / Virtual dissectionモデル / 統計数学 / データサイエンス / 高次元データ / がんゲノム / 多層オミックス / ゲノム解析 / RNA / 免疫 / 腫瘍免疫 / 分子標的治療 / 分子分類 / オミックス解析 / 肝胆膵がん / 情報科学 / 体組成 / 遺伝子発現 / グルココルチコイド / 多臓器連関 / エネルギー代謝 / 数理科学 / 糖尿病 / 生活習慣病 / オミクス / 内分泌学 / 代謝学 / 性差 / 骨格筋 / サルコペニア / 肥満 / 臓器連関 / グルココルチコイド受容体 / 代謝 / 複雑系 / 人工知能 / シリコンシークエンサー / 血液腫瘍 / 消化器癌 / シリコン・シークエンサー / 個別化ゲノム医療 / メディカルインフォマティクス / pathway modeling / protein-RNA interaction prediction / protein-protein interaction / protein network / パスウェイシミュレーション / タンパク質-RNA相互作用予測 / タンパク質相互作用情報 / search algorithm / systems biology / Petri net / microarray analysis / nonparametric regression / Bayesian network / 探索技法 / ノンパラメトリック回帰 / Bayesiamネットワーク / 薬剤応答パスウェィ / ベトリネット / パスウェイ解析 / パ スウェイ解析 / 動的モデル / 薬剤応答パスウェイ / シークエンス解析 / スーパーコンピュータ / 遺伝統計学 / ゲノム科学 / 高速相関係数推定 / 少数事例データ / 因果ネットワーク / 大規模変数次元データ / 遺伝子発現度測定データ / 独立成分分析 / 統計的因果推論 / 遺子機能 / グラフマイニング / 知識ベース / 遺伝子機能 / データマイニング / 因果推論 / 大規模次元 / 自己分泌パスウェイ / 漢方薬 / Gefitinib / Fenofibrate / 創薬ターゲット遺伝子 / 遺伝子発現マイクロアレイデータ / ソフトコンピューティング / モデル化 / スペクトル判別 / カルバックライブラーカーネル / マイクロアレイデータ / グラフィカルモデル / 階層ベイズ / Petriネット / CSML / モデリング Less
  • Research Projects

    (27 results)
  • Research Products

    (359 results)
  • Co-Researchers

    (94 People)
  •  Network analysis method for extracting useful molecules in HFLAC

    • Principal Investigator
      笠島 理加
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 49020:Human pathology-related
    • Research Institution
      Kanagawa Cancer Center Research Institute
  •  時空間内包型数理的解析手法によるがん細胞のクロナリティの新たな理解

    • Principal Investigator
      植村 元秀
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 56:Surgery related to the biological and sensory functions and related fields
    • Research Institution
      Fukushima Medical University
  •  Fundamental research for the development of phage therapies targeting intestinal pathobiont

    • Principal Investigator
      植松 智
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 54:Internal medicine of the bio-information integration and related fields
    • Research Institution
      Osaka Metropolitan University
  •  whole genome and multiomics analysis of hairy cell leukemia japansese variant

    • Principal Investigator
      YOKOYAMA KAZUAKI
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 49030:Experimental pathology-related
    • Research Institution
      The University of Tokyo
  •  Development of Information Base Technology for Evaluation of Organ Functions of Intestinal Microbiota by Disease MetagenomicsPrincipal Investigator

    • Principal Investigator
      Imoto Seiya
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      The University of Tokyo
  •  Prediction of cancer microenvironment using deconvolution analysis

    • Principal Investigator
      Kasajima Rika
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 55020:Digestive surgery-related
    • Research Institution
      Kanagawa Cancer Center Research Institute
  •  Elucidation of the molecular basis of the diseases caused by abnormalities in networks of energy metabolism

    • Principal Investigator
      Tanaka Hirotoshi
    • Project Period (FY)
      2018 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Complex Systems Disease Theory
    • Research Institution
      Keio University
      The University of Tokyo
  •  Multi-omics analysis for hepato-biliary-pancreatic cancers

    • Principal Investigator
      Nakagawa Hidewaki
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 53:Organ-based internal medicine and related fields
    • Research Institution
      Institute of Physical and Chemical Research
  •  Bayesian Modeling for Understanding Systems of Immune Responses and Revealing Immune Escape MechanismsPrincipal Investigator

    • Principal Investigator
      Imoto Seiya
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      The University of Tokyo
  •  Hierarchical Bayesian method for analyzing high polymorphic HLA genome sequencePrincipal Investigator

    • Principal Investigator
      Imoto Seiya
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      The University of Tokyo
  •  Neodimensional exploration for cancer systems by supercomputing and innovative information technology

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Theories and Methodologies for Large Complex Data

    • Principal Investigator
      AOSHIMA Makoto
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Statistical science
    • Research Institution
      University of Tsukuba
  •  Medical informatics infrastructure for personalized genomic medicine

    • Principal Investigator
      Satoru Miyano
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      The University of Tokyo
  •  Omics Analysis and Systems Mathematical Science towards Understanding Kampo EfficacyPrincipal Investigator

    • Principal Investigator
      IMOTO Seiya
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      The University of Tokyo
  •  Prediction of Epidemic of Infectious Disease by Statistical Modeling, and Scientific Policy MakingPrincipal Investigator

    • Principal Investigator
      IMOTO Seiya
    • Project Period (FY)
      2011 – 2013
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  Development of Systems Cancer Research by Computation and Simulation

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Drug-response pathway analysis methods based on network analysis

    • Principal Investigator
      MIYANO Satoru
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      The University of Tokyo
  •  確率ネットワークモデルに基づく高次情報バイオマーカー探索多変量統計手法の開発Principal Investigator

    • Principal Investigator
      井元 清哉
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  Flexible and Robust Nonlinear Statistical Modeling Based on High-Dimensional Complex Heterogeneous Data AnalysisPrincipal Investigator

    • Principal Investigator
      IMOTO Seiya
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  Development of Causal Structure Mining Method for Large Scale Dimensional Data and Construction of Gene Function Knowledge Base

    • Principal Investigator
      WASHIO Takashi
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Intelligent informatics
    • Research Institution
      Osaka University
  •  In Silico Search for Drug Target Pathways by Gene Networks

    • Principal Investigator
      MIYANO Satoru
    • Project Period (FY)
      2006 – 2008
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      The University of Tokyo
  •  Estimation and simulation of gene networks for developing in silico biological networks

    • Principal Investigator
      MIYANO Satoru
    • Project Period (FY)
      2005 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Research on information fusion methods for multiple genomic data sources with heterogeneity based on hierarchical statistical modeling

    • Principal Investigator
      HIGUCHI Tomoyuki
    • Project Period (FY)
      2005 – 2008
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Statistical science
    • Research Institution
      The Institute of Statistical Mathematics
  •  ベイズ型統計モデルによる複数異種形式データ解析の理論と方法論の研究Principal Investigator

    • Principal Investigator
      井元 清哉
    • Project Period (FY)
      2005 – 2007
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  高次元データによる複雑非線形現象解明のための柔軟な統計モデルの理論・方法論の研究Principal Investigator

    • Principal Investigator
      井元 清哉
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  Information Technoloy for Gene Network Analysis

    • Principal Investigator
      MIYANO Satoru
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Information Scientific Foundations of Knowledge Discovery from Proteome Data

    • Principal Investigator
      MIYANO Satoru
    • Project Period (FY)
      2003 – 2005
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      The University of Tokyo

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2000 Other

All Journal Article Presentation Book Other

  • [Book] 日本内科学会誌2021

    • Author(s)
      井元清哉
    • Total Pages
      7
    • Publisher
      日本内科学会
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Book] Precision Medicine2020

    • Author(s)
      井元清哉
    • Total Pages
      6
    • Publisher
      ニュー・サイエンス社
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Book] 遺伝統計学と疾患ゲノムデータ解析(第2章-6: T細胞受容体レパトア解析)2018

    • Author(s)
      井元清哉、長谷川嵩矩、山口類
    • Total Pages
      272
    • Publisher
      メディカルドゥ
    • ISBN
      9784944157631
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Book] T細胞受容体レパトア解析2018

    • Author(s)
      井元清哉, 長谷川嵩矩, 山口類
    • Total Pages
      5
    • Publisher
      メディカルドゥ
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Book] 実験医学 がん免疫療法×ゲノミクスで変わるがん治療2017

    • Author(s)
      井元清哉、山口類、水野晋一、中川英刀
    • Total Pages
      137
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Book] Computational Drug Target Pathway Discovery : A Bayesian Network Approach. (Handbook of Computational Statistics : Statistical Bioinformatics)(in H.Lu, B.Schokop, H.Zhao (Eds.))2010

    • Author(s)
      S.Imoto, Y.Tamada, H.Araki, S.Miyano
    • Publisher
      Springer-Varlag. in press.
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Book] 生命システムネットワークを明らかにするための統計的モデリング, (統計学会75周年記念出版,「21世紀の統計科学II 自然・生物・健康の統計科学」小西貞則, 国友直人(編))2008

    • Author(s)
      井元 清哉
    • Publisher
      東京大学出版会
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Book] Gene Networks: Estimation, Modeling and Simulation In Computational Systems Biology (Book Chapter)2005

    • Author(s)
      S.Imoto, H.Matsuno, S.Miyano
    • Total Pages
      409
    • Publisher
      Academic Press
    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Targeted lysis of Staphylococcus hominis linked to axillary osmidrosis using bacteriophage-derived endolysin2024

    • Author(s)
      Watanabe Miki、Uematsu Miho、Fujimoto Kosuke、Hara Takeshi、Yamamoto Mako、Miyaoka Daichi、Yokota Chieko、Kamei Yukari、Sugimoto Akira、Kawasaki Natsuko、Yabuno Takato、Sato Noriaki、Sato Shintaro、Yamaguchi Kiyoshi、Furukawa Yoichi、Tsuruta Daisuke、Okada Fumihiro、Imoto Seiya、Uematsu Satoshi
    • Journal Title

      Journal of Investigative Dermatology

      Volume: - Issue: 11 Pages: 2577-2581

    • DOI

      10.1016/j.jid.2024.03.039

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Journal Article] Preemptive Intravenous Human Immunoglobulin G Suppresses BK Polyomavirus Replication and Spread of Infection In Vitro2023

    • Author(s)
      Sato Noriaki、Shiraki Atsuko、Mori Keita P.、Sakai Kaoru、Takemura Yoshinori、Yanagita Motoko、Imoto Seiya、Tanabe Kazunari、Shiraki Kimiyasu
    • Journal Title

      American Journal of Transplantation

      Volume: - Issue: 5 Pages: 862-866

    • DOI

      10.1016/j.ajt.2023.11.007

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K18321, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-23K27616
  • [Journal Article] Imputing time-series microbiome abundance profiles with diffusion model2023

    • Author(s)
      Seki Misato、Zhang Yao-Zhong、Imoto Seiya
    • Journal Title

      IEEE Xplore

      Volume: BIBM 2023 Pages: 914-919

    • DOI

      10.1109/bibm58861.2023.10385703

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21K12104, KAKENHI-PROJECT-21H03538
  • [Journal Article] Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings2023

    • Author(s)
      Zhang Yao-zhong、Bai Zeheng、Imoto Seiya
    • Journal Title

      Bioinformatics

      Volume: 39 Issue: 10 Pages: 1-10

    • DOI

      10.1093/bioinformatics/btad617

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K12104, KAKENHI-PROJECT-21H03538
  • [Journal Article] Impact of neoadjuvant therapy on gut microbiome in patients with resectable/borderline resectable pancreatic ductal adenocarcinoma2023

    • Author(s)
      Takaori Ayaka、Hashimoto Daisuke、Ikeura Tsukasa、Ito Takashi、Nakamaru Koh、Masuda Masataka、Nakayama Shinji、Yamaki So、Yamamoto Tomohisa、Fujimoto Kosuke、Matsuo Yoshiyuki、Akagawa Shohei、Ishida Mitsuaki、Yamaguchi Kiyoshi、Imoto Seiya、Hirota Kiichi、Uematsu Satoshi、Satoi Sohei、Sekimoto Mitsugu、Naganuma Makoto
    • Journal Title

      Pancreatology

      Volume: - Issue: 4 Pages: 367-376

    • DOI

      10.1016/j.pan.2023.04.001

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22K16032, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-22K16057, KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-22K09106, KAKENHI-PROJECT-22H00477
  • [Journal Article] Explainable AI for Estimating Pathogenicity of Genetic Variants Using Large-Scale Knowledge Graphs.2023

    • Author(s)
      Abe S, Tago S, Yokoyama K, Ogawa M, Takei T, Imoto S, Fuji M.
    • Journal Title

      Cancers (Basel)

      Volume: 15 Issue: 4 Pages: 1118-1118

    • DOI

      10.3390/cancers15041118

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21H02711
  • [Journal Article] Definition of a Dietary Pattern Expressing the Intake of Vegetables and Fruits and Its Association with Intestinal Microbiota2023

    • Author(s)
      Yamauchi Toshitaka、Koyama Naoko、Hirai Ayumi、Suganuma Hiroyuki、Suzuki Shigenori、Murashita Koichi、Mikami Tatsuya、Tamada Yoshinori、Sato Noriaki、Imoto Seiya、Itoh Ken、Nakaji Shigeyuki
    • Journal Title

      Nutrients

      Volume: 15 Issue: 9 Pages: 2104-2104

    • DOI

      10.3390/nu15092104

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Journal Article] ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics.2023

    • Author(s)
      Sato N, Uematsu M, Fujimoto K, Uematsu S, Imoto S.
    • Journal Title

      Bioinformatics

      Volume: 39 Issue: 10

    • DOI

      10.1093/bioinformatics/btad622

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15733, KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-19K18321, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21H03538
  • [Journal Article] Zero-shot-capable identification of phage?host relationships with whole-genome sequence representation by contrastive learning2023

    • Author(s)
      Zhang Yao-zhong、Liu Yunjie、Bai Zeheng、Fujimoto Kosuke、Uematsu Satoshi、Imoto Seiya
    • Journal Title

      Briefings in Bioinformatics

      Volume: 24 Issue: 5 Pages: 1-10

    • DOI

      10.1093/bib/bbad239

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-21K12104, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21H03538
  • [Journal Article] Microbial Gene Ontology informed deep neural network for microbe functionality discovery in human diseases2023

    • Author(s)
      Liu Yunjie、Zhang Yao-zhong、Imoto Seiya
    • Journal Title

      PLOS ONE

      Volume: 18 Issue: 8 Pages: 1-13

    • DOI

      10.1371/journal.pone.0290307

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K12104, KAKENHI-PROJECT-21H03538
  • [Journal Article] Prime-boost-type PspA3 +2 mucosal vaccine protects cynomolgus macaques from intratracheal challenge with pneumococci.2023

    • Author(s)
      Yokota C, Fujimoto K, Yamakawa N, Kono M, Miyaoka D, Shimohigoshi M, Uematsu M, Watanabe M, Kamei Y, Sugimoto A, Kawasaki N, Yabuno T, Okamura T, Kuroda E, Hamaguchi S, Sato S, Hotomi M, Akeda Y, Ishii KJ, Yasutomi Y, Sunami K, Uematsu S.
    • Journal Title

      Inflammation and Regeneration

      Volume: 43 Issue: 1 Pages: 55-55

    • DOI

      10.1186/s41232-023-00305-2

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K15733, KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-23K27420
  • [Journal Article] Identification of bacteriophage genome sequences with representation learning2022

    • Author(s)
      Bai Zeheng、Zhang Yao-zhong、Miyano Satoru、Yamaguchi Rui、Fujimoto Kosuke、Uematsu Satoshi、Imoto Seiya
    • Journal Title

      Bioinformatics

      Volume: 38 Issue: 18 Pages: 4264-4270

    • DOI

      10.1093/bioinformatics/btac509

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K12104, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K19495
  • [Journal Article] 【自己免疫疾患 層別化する新時代へ 臨床検体のマルチオミクス解析、腸内細菌によって見えてきた免疫経路の全容】(第1章)精密医療を目指したマルチオミクス解析によるアプローチ メタゲノム解析からの層別化医療への展望2022

    • Author(s)
      藤本 康介, 植松 智, 井元 清哉
    • Journal Title

      実験医学

      Volume: 40(18) Pages: 2374-2379

    • Data Source
      KAKENHI-PROJECT-22H00477
  • [Journal Article] Two Blautia Species Associated with Visceral Fat Accumulation: A One-Year Longitudinal Study2022

    • Author(s)
      Ozato Naoki、Yamaguchi Tohru、Mori Kenta、Katashima Mitsuhiro、Kumagai Mika、Murashita Koichi、Katsuragi Yoshihisa、Tamada Yoshinori、Kakuta Masanori、Imoto Seiya、Ihara Kazushige、Nakaji Shigeyuki
    • Journal Title

      Biology

      Volume: 11 Issue: 2 Pages: 318-318

    • DOI

      10.3390/biology11020318

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Journal Article] いま知りたい!!ファージ療法は多剤耐性菌への切り札となるか 1 概論-ファージ療法の利点と課題.2022

    • Author(s)
      植松 智,井元 清哉
    • Journal Title

      実験医学

      Volume: 40(18) Pages: 2983-2985

    • Data Source
      KAKENHI-PROJECT-22H00477
  • [Journal Article] Characterization of the human gut virome in metabolic and autoimmune diseases2022

    • Author(s)
      Fujimoto Kosuke、Miyaoka Daichi、Uematsu Satoshi
    • Journal Title

      Inflammation and Regeneration

      Volume: 42 Issue: 1 Pages: 32-32

    • DOI

      10.1186/s41232-022-00218-6

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21K19495
  • [Journal Article] Anti-inflammatory effects of ruxolitinib on chronic neutrophilic leukemia harboring CSF3R-T618I mutation with bilateral renal abscesses.2022

    • Author(s)
      Sahara N, Yokoyama K, Matsunaga T, Kitahara S, Fujii T, Kobayashi S, Yusa N, Shimizu E, Imoto S, Tojo A, Ohno N.
    • Journal Title

      Leuk Res Rep.

      Volume: 18 Pages: 100348-100348

    • DOI

      10.1016/j.lrr.2022.100348

    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21H02711
  • [Journal Article] Phage therapy for Clostridioides difficile infection2022

    • Author(s)
      Fujimoto Kosuke、Uematsu Satoshi
    • Journal Title

      Frontiers in Immunology

      Volume: 13 Pages: 1057892-1057892

    • DOI

      10.3389/fimmu.2022.1057892

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K16329, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21K19495
  • [Journal Article] Bronchoalveolar lavage fluid reveals factors contributing to the efficacy of PD-1 blockade in lung cancer2022

    • Author(s)
      Masuhiro Kentaro、Tamiya Motohiro、Fujimoto Kosuke
    • Journal Title

      JCI Insight

      Volume: 1 Issue: 9 Pages: 1-1

    • DOI

      10.1172/jci.insight.157915

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K08650, KAKENHI-PROJECT-21K07252, KAKENHI-PROJECT-21K07112, KAKENHI-PROJECT-22K08283, KAKENHI-PROJECT-18H05282, KAKENHI-PROJECT-22H00477, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K19495
  • [Journal Article] Repeated Lineage Switches in an Elderly Case of Refractory B-Cell Acute Lymphoblastic Leukemia With MLL Gene Amplification: A Case Report and Literature Review2022

    • Author(s)
      Takeda Reina、Yokoyama Kazuaki、Fukuyama Tomofusa、Kawamata Toyotaka、Ito Mika、Yusa Nozomi、Kasajima Rika、Shimizu Eigo、Ohno Nobuhiro、Uchimaru Kaoru、Yamaguchi Rui、Imoto Seiya、Miyano Satoru、Tojo Arinobu
    • Journal Title

      Frontiers in Oncology

      Volume: 12

    • DOI

      10.3389/fonc.2022.799982

    • Data Source
      KAKENHI-PROJECT-21H02711
  • [Journal Article] Discovering microbe functionality in human disease with a gene-ontology-aware model2021

    • Author(s)
      Liu Y, Zhang Y-Z, Imoto S.
    • Journal Title

      Proc. Biological Ontologies and Knowledge Bases

      Volume: - Pages: 1873-1880

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Journal Article] Oral MucoRice-CTB vaccine for safety and microbiota-dependent immunogenicity in humans: a phase 1 randomised trial2021

    • Author(s)
      Yuki Yoshikazu、Nojima Masanori、Hosono Osamu、Tanaka Hirotoshi、Kimura Yasumasa、Satoh Takeshi、Imoto Seiya、Uematsu Satoshi、Kurokawa Shiho、Kashima Koji、Mejima Mio、Nakahashi-Ouchida Rika、Uchida Yohei、Marui Takanori、Yoshikawa Noritada、Nagamura Fumitaka、Fujihashi Kohtaro、Kiyono Hiroshi
    • Journal Title

      The Lancet Microbe

      Volume: 2 Issue: 9 Pages: 30196-8

    • DOI

      10.1016/s2666-5247(20)30196-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K10298
  • [Journal Article] Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana2021

    • Author(s)
      Parbie Prince Kofi、Mizutani Taketoshi、Ishizaka Aya、Kawana-Tachikawa Ai、Runtuwene Lucky Ronald、Seki Sayuri、Abana Christopher Zaab-Yen、Kushitor Dennis、Bonney Evelyn Yayra、Ofori Sampson Badu、Uematsu Satoshi、Imoto Seiya、Kimura Yasumasa、Kiyono Hiroshi、Ishikawa Koichi、Ampofo William Kwabena、Matano Tetsuro
    • Journal Title

      Frontiers in Cellular and Infection Microbiology

      Volume: 11 Pages: 646467-646467

    • DOI

      10.3389/fcimb.2021.646467

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21H02745, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K19495, KAKENHI-PROJECT-18H05280
  • [Journal Article] Role of Circulating Tumor DNA in Hematological Malignancy2021

    • Author(s)
      Ogawa Miho、Yokoyama Kazuaki、Imoto Seiya、Tojo Arinobu
    • Journal Title

      Cancers

      Volume: 13 Issue: 9 Pages: 2078-2078

    • DOI

      10.3390/cancers13092078

    • Data Source
      KAKENHI-PROJECT-21H02711
  • [Journal Article] Comprehensive molecular analysis of genomic profiles and PD-L1 expression in lung adenocarcinoma with a high-grade fetal adenocarcinoma component2021

    • Author(s)
      Masaki Suzuki, Rika Kasajima, Tomoyuki Yokose, Hiroyuki Ito, Eigo Shimizu, Seira Hatakeyama, Kazuaki Yokoyama, Rui Yamaguchi, Yoichi Furukawa, Satoru Miyano, Seiya Imoto, Emi Yoshioka, Kota Washimi, Yoichiro Okubo, Kae Kawachi, Shinya Sato, Yohei Miyagi
    • Journal Title

      Translational Lung Cancer Research

      Volume: 10 Issue: 3 Pages: 1292-1304

    • DOI

      10.21037/tlcr-20-1158

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K09422, KAKENHI-PROJECT-18K15111, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-19K16605, KAKENHI-PROJECT-21H02711
  • [Journal Article] Whole genome sequencing with long-reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.2021

    • Author(s)
      Fujimoto A, Wong JH, Yoshii Y, Akiyama S, Tanaka A, Yagi H, Shigemizu D, Nakagawa H, Mizokami M, and Shimada M.
    • Journal Title

      Genome Medicine

      Volume: 13 Issue: 1 Pages: 65-65

    • DOI

      10.1186/s13073-021-00883-1

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-18K19426, KAKENHI-PROJECT-19K16740, KAKENHI-PLANNED-18H05511, KAKENHI-PROJECT-18J40119, KAKENHI-PROJECT-21K19400
  • [Journal Article] Ovariectomy-Induced Dysbiosis May Have a Minor Effect on Bone in Mice2021

    • Author(s)
      Kosaka Satoshi、Nadatani Yuji、Higashimori Akira、Otani Koji、Fujimoto Kosuke、Nagata Yuki、Ominami Masaki、Fukunaga Shusei、Hosomi Shuhei、Kamata Noriko、Tanaka Fumio、Nagami Yasuaki、Taira Koichi、Imoto Seiya、Uematsu Satoshi、Watanabe Toshio、Fujiwara Yasuhiro
    • Journal Title

      Microorganisms

      Volume: 9 Issue: 12 Pages: 2563-2563

    • DOI

      10.3390/microorganisms9122563

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K19495
  • [Journal Article] Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation2021

    • Author(s)
      Fujimoto, Kosuke, et al.
    • Journal Title

      Gastroenterology

      Volume: - Issue: 6 Pages: 400-405

    • DOI

      10.1053/j.gastro.2021.02.013

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K12215, KAKENHI-PROJECT-19K17028, KAKENHI-PROJECT-19K17932, KAKENHI-PROJECT-18H02571, KAKENHI-PROJECT-18H05280, KAKENHI-PROJECT-21H03538, KAKENHI-PROJECT-21K19495, KAKENHI-PROJECT-20K07563
  • [Journal Article] Halcyon: an accurate basecaller exploiting an encoder?decoder model with monotonic attention2020

    • Author(s)
      Konishi Hiroki、Yamaguchi Rui、Yamaguchi Kiyoshi、Furukawa Yoichi、Imoto Seiya
    • Journal Title

      Bioinformatics

      Volume: online first Issue: 9 Pages: 1211-1217

    • DOI

      10.1093/bioinformatics/btaa953

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-20K07563
  • [Journal Article] Comprehensive Analysis of Indels in Whole-genome Microsatellite Regions and Microsatellite Instability across 21 Cancer Types2020

    • Author(s)
      Fujimoto A*, Fujita M, Hasegawa T, Wong JH, Maejima K, Oku-Sasaki A, Nakano K, Shiraishi Y, Miyano S, Yamamoto G, Akagi K, Imoto S, and Nakagawa H
    • Journal Title

      Genome Research

      Volume: 30 Issue: 3 Pages: 334-34

    • DOI

      10.1101/gr.255026.119

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K19426, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-18H05511, KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-18H02680, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-19K09206
  • [Journal Article] Nanopore base-calling from a perspective of instance segmentation2020

    • Author(s)
      Zhang Y-Z, Akdemir A, Tremmel G, Imoto S, Miyano S, Shibuya T, Yamaguchi R.
    • Journal Title

      BMC Bioinformatics

      Volume: 23;21(Suppl 3) Issue: S3 Pages: 136-136

    • DOI

      10.1186/s12859-020-3459-0

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H01693, KAKENHI-PROJECT-17K20023
  • [Journal Article] Classification of primary liver cancer with immunosuppression mechanisms and correlation with genomic alterations.2020

    • Author(s)
      Fujita M, Yamaguchi R, Hasegawa T, Shimada S, Arihiro K, Hayashi S, Maejima K, Nakano K, Fujimoto A, Ono A, Aikata H, Ueno M, Hayami S, Tanaka H, Miyano S, Yamaue H, Chayama K, Kakimi K, Tanaka S, Imoto S, Nakagawa H.
    • Journal Title

      EBioMedicine

      Volume: 53 Pages: 102659-102659

    • DOI

      10.1016/j.ebiom.2020.102659

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K10675, KAKENHI-PROJECT-18K19426, KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-19H01055, KAKENHI-PROJECT-18H02680, KAKENHI-PROJECT-18H02696, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-17H06269, KAKENHI-PROJECT-17K09426, KAKENHI-PROJECT-18K19575, KAKENHI-PLANNED-18H05511, KAKENHI-PROJECT-19K09206
  • [Journal Article] Global gene network exploration based on explainable artificial intelligence approach2020

    • Author(s)
      Park Heewon、Maruhashi Koji、Yamaguchi Rui、Imoto Seiya、Miyano Satoru
    • Journal Title

      PLOS ONE

      Volume: 15 Issue: 11 Pages: e0241508-e0241508

    • DOI

      10.1371/journal.pone.0241508

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K20402, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-18H03329
  • [Journal Article] Neoantimon: A multifunctional R package for identification of tumor-specific neoantigens.2020

    • Author(s)
      Hasegawa T, Hayashi S, Nakagawa H, Miyano S, and Imoto S.
    • Journal Title

      Bioinformatics

      Volume: 36 Issue: 18 Pages: 4813-4816

    • DOI

      10.1093/bioinformatics/btaa616

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-18H03328
  • [Journal Article] Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways2020

    • Author(s)
      Kasajima R, Yamaguchi R, Shimizu E, Tamada Y, Niida A, Tremmel G, Kishida T,Aoki I, Imoto S, Miyano S, Uemura H, Miyagi Y
    • Journal Title

      Oncol Rep.

      Volume: 43(3) Pages: 943-952

    • DOI

      10.3892/or.2020.7481

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Theoretical foundation of the performance of phylogeny-based somatic variant detection2020

    • Author(s)
      Moriyama T, Imoto S, Miyano S, Yamaguchi R.
    • Journal Title

      Proc. 2nd International Symposium on Mathematical and Computational Oncology

      Volume: 12508 Pages: 87-101

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Journal Article] A Bayesian model integration for mutation calling through data partitioning2019

    • Author(s)
      Moriyama T, Imoto S, Hayashi S, Shiraishi Y, Miyano S, Yamaguchi R
    • Journal Title

      Bioinformatics

      Volume: 35(21) Issue: 21 Pages: 4247-4254

    • DOI

      10.1093/bioinformatics/btz233

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Accurate and Flexible Bayesian Mutation Call from Multi-regional Tumor Samples2019

    • Author(s)
      Moriyama T, Imoto s, Miyano S, Yamaguchi R
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 11826 Pages: 47-61

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] The first case of elderly TCF3-HLF-positive B-cell acute lymphoblastic leukemia.2019

    • Author(s)
      Takeda R, Yokoyama K (corresponding author), Ogawa M, Kawamata T, Tomofusa F, Kondoh K, Tomomi T, Nakamura S, Ito M, Yusa N, Shimizu E, Ohno N, Uchimaru K, Yamaguchi R, Imoto S, Miyano S, and Tojo A.
    • Journal Title

      Leuk lymphoma.

      Volume: 60 Issue: 11 Pages: 2821-2824

    • DOI

      10.1080/10428194.2019.1602267

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K16605, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03329
  • [Journal Article] Robust sample-specific stability selection with effective reror control2019

    • Author(s)
      Park H, Yamada M, Imoto S, Miyano S
    • Journal Title

      J Comput Biol

      Volume: 26(3) Issue: 3 Pages: 202-217

    • DOI

      10.1089/cmb.2018.0180

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H06299
  • [Journal Article] ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data2019

    • Author(s)
      Hayashi S, Moriyama T, Yamaguchi R, Mizuno S, Komura M, Miyano S, Nakagawa H, Imoto S
    • Journal Title

      J Comput Biol.

      Volume: 26(9) Issue: 9 Pages: 923-937

    • DOI

      10.1089/cmb.2018.0224

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03328
  • [Journal Article] Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning2019

    • Author(s)
      Konishi H, Komura D, Katoh H, Atsumi S, Koda H, Yamamoto A, Seto Y, Fukayama M, Yamaguchi R, Imoto S, Ishikawa S.
    • Journal Title

      BMC Bioinformatics

      Volume: 20(1) Issue: 1 Pages: 267-267

    • DOI

      10.1186/s12859-019-2853-y

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Journal Article] Development of an MSI-positive colon tumor with aberrant DNA methylation in a PPAP patient2019

    • Author(s)
      Yamaguchi K, Shimizu E, Yamaguchi R, Imoto S, Komura M, Hatakeyama S, Noguchi R, Takane K, Ikenoue T, Gohda Y, Yano H, Miyano S, Furukawa Y
    • Journal Title

      J Hum Genet.

      Volume: 64(8) Issue: 8 Pages: 729-740

    • DOI

      10.1038/s10038-019-0611-7

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H03575, KAKENHI-PROJECT-17K16530, KAKENHI-PROJECT-17K07214
  • [Journal Article] Massively parallel sequencing of tenosynovial giant cell tumors reveals novel CSF1 fusion transcripts and novel somatic CBL mutations2019

    • Author(s)
      Tsuda Yusuke、Matsubara Daisuke (5th) etc
    • Journal Title

      International Journal of Cancer

      Volume: 145 Issue: 12 Pages: 3276-3284

    • DOI

      10.1002/ijc.32421

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K07441, KAKENHI-PROJECT-19K12215, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H02676, KAKENHI-PROJECT-17H03596, KAKENHI-PROJECT-18H02933, KAKENHI-PROJECT-19H03444, KAKENHI-PROJECT-16K08672, KAKENHI-PROJECT-18K15303
  • [Journal Article] Quantifying immune-based counterselection of somatic mutations.2019

    • Author(s)
      Yang F, Kim DK, Nakagawa H, Hayashi S, Imoto S, Stein L, and Roth F
    • Journal Title

      PLoS Genet

      Volume: 15 Issue: 7 Pages: e1008227-e1008227

    • DOI

      10.1371/journal.pgen.1008227

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-18H03328
  • [Journal Article] Antigen delivery targeted to tumor-associated macrophages overcomes tumor immune resistance2019

    • Author(s)
      Muraoka Daisuke、Seo Naohiro、Hayashi Tae、Tahara Yoshiro、Fujii Keisuke、Tawara Isao、Miyahara Yoshihiro、Okamori Kana、Yagita Hideo、Imoto Seiya、Yamaguchi Rui、Komura Mitsuhiro、Miyano Satoru、Goto Masahiro、Sawada Shin-ichi、Asai Akira、Ikeda Hiroaki、Akiyoshi Kazunari、Harada Naozumi、Shiku Hiroshi
    • Journal Title

      Journal of Clinical Investigation

      Volume: 129 Issue: 3 Pages: 1278-1294

    • DOI

      10.1172/jci97642

    • NAID

      120006987781

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K07222, KAKENHI-PROJECT-18K19584, KAKENHI-PROJECT-18H02559, KAKENHI-PROJECT-18H02872, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-18K19474, KAKENHI-PROJECT-16H06369, KAKENHI-PROJECT-16K07168
  • [Journal Article] Integrated exome and RNA sequencing of dedifferentiated liposarcoma2019

    • Author(s)
      Hirata Makoto、Matsubara Daisuke (21th) etc
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1-12

    • DOI

      10.1038/s41467-019-13286-z

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K07441, KAKENHI-PROJECT-19K07791, KAKENHI-PROJECT-19K09206, KAKENHI-PROJECT-19K12215, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H02676, KAKENHI-PROJECT-17H03596, KAKENHI-PROJECT-18H02933, KAKENHI-PROJECT-19H03444, KAKENHI-PROJECT-16K08672
  • [Journal Article] Prognostic impact of circulating tumor DNA status post-allogeneic hematopoietic stem cell transplantation in AML and MDS.2019

    • Author(s)
      Nakamura S, Yokoyama K (co-1st and co-corresponding author), Shimizu E, Yusa N, Kondoh K, Ogawa M, Takei T, Kobayashi A, Ito M, Isobe M, Konuma T, Kato S, Kasajima R, Wada Y, Inoue-Nagamura T, Yamaguchi R, Takahashi S, Imoto S, Miyano S, and Tojo A.
    • Journal Title

      Blood

      Volume: 133 Issue: 25 Pages: 2682-2695

    • DOI

      10.1182/blood-2018-10-880690

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K16605, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03329
  • [Journal Article] Effects of long-term intake of a yogurt fermented with Lactobacillus delbrueckii subsp. bulgaricus 2038 and Streptococcus thermophilus 1131 on mice2018

    • Author(s)
      Usui Yuki、Kimura Yasumasa、Satoh Takeshi、Takemura Naoki、Ouchi Yasuo、Ohmiya Hiroko、Kobayashi Kyosuke、Suzuki Hiromi、Koyama Satomi、Hagiwara Satoko、Tanaka Hirotoshi、Imoto Seiya、Eberl G?rard、Asami Yukio、Fujimoto Kosuke、Uematsu Satoshi
    • Journal Title

      International Immunology

      Volume: 30 Issue: 7 Pages: 319-331

    • DOI

      10.1093/intimm/dxy035

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0017, KAKENHI-PROJECT-16K19148, KAKENHI-PROJECT-16H05330, KAKENHI-PROJECT-17H04257, KAKENHI-PROJECT-18H02571, KAKENHI-PROJECT-17K19543, KAKENHI-PROJECT-17K07212, KAKENHI-PROJECT-17KK0189
  • [Journal Article] Cell-lineage level-targeted sequencing to identify acute myeloid leukemia with myelodysplasia-related changes2018

    • Author(s)
      Yokoyama K, Shimizu E, Yokoyama N, Nakamura S, Kasajima R, Ogawa M, Takei T,Ito M, Kobayashi A, Yamaguchi R, Imoto S, Miyano S, Tojo A
    • Journal Title

      Blood Adv

      Volume: 2(19) Issue: 19 Pages: 2513-2521

    • DOI

      10.1182/bloodadvances.2017010744

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks2018

    • Author(s)
      Park H, Shimamura T, Imoto S, Miyano S
    • Journal Title

      J Comput Biol

      Volume: 25(2) Issue: 2 Pages: 130-145

    • DOI

      10.1089/cmb.2017.0120

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
  • [Journal Article] Phenotype-Based Gene Analysis Allowed Successful Diagnosis of X-Linked Neutropenia Associated with a Novel Wasp Mutation.2018

    • Author(s)
      Kobayashi M, Yokoyama K, Shimizu E, Yusa N, Ito M, Yamaguchi R, Imoto S, Miyano S, and Tojo A.
    • Journal Title

      Ann Hematol

      Volume: 97 Issue: 2 Pages: 367-369

    • DOI

      10.1007/s00277-017-3134-3

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K21012, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16J02129, KAKENHI-PROJECT-16H00660
  • [Journal Article] ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data2018

    • Author(s)
      Hayashi S, Yamaguchi R, Mizuno S, Komura M, Miyano S, Nakagawa H, Imoto S
    • Journal Title

      BMC Genomics

      Volume: 19(1) Issue: 1 Pages: 790-790

    • DOI

      10.1186/s12864-018-5169-9

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03328
  • [Journal Article] Genomic Heterogeneity Within Individual Prostate Cancer Foci Impacts Predictive Biomarkers of Targeted Therapy2018

    • Author(s)
      VanderWeele DJ, Finney R, Katayama K, Gillard M, Paner G, Imoto S, Yamaguchi R, Wheeler D, Lack J, Cam M, Pontier A, Nguyen YTM, Maejima K, Sasaki-Oku A, Nakano K, Tanaka H, Vander Griend D, Kubo M, Ratain MJ, Miyano S, Nakagawa H
    • Journal Title

      Eur Urol Focus

      Volume: pii: S2405-4569(18) Issue: 3 Pages: 30007-5

    • DOI

      10.1016/j.euf.2018.01.006

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-19K12215
  • [Journal Article] Targeting Tyro3 ameliorates a model of PGRN-mutant FTLD-TDP via tau-mediated synaptic pathology2018

    • Author(s)
      Fujita Kyota、Chen Xigui、Homma Hidenori、Tagawa Kazuhiko、Amano Mutsuki、Saito Ayumu、Imoto Seiya、Akatsu Hiroyasu、Hashizume Yoshio、Kaibuchi Kozo、Miyano Satoru、Okazawa Hitoshi
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 433-433

    • DOI

      10.1038/s41467-018-02821-z

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K07383, KAKENHI-PROJECT-17K08725, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-17H05561, KAKENHI-PUBLICLY-17H05693, KAKENHI-PROJECT-16H02655, KAKENHI-PROJECT-16H06277
  • [Journal Article] Azacitidine effectively reduces TP53-mutant leukemic cell burden in secondary acute myeloid leukemia after cord blood transplantation2018

    • Author(s)
      Takei Tomomi、Yokoyama Kazuaki、Shimizu Eigo、Konuma Takaaki、Takahashi Satoshi、Yamaguchi Rui、Imoto Seiya、Miyano Satoru、Tojo Arinobu
    • Journal Title

      Leukemia & Lymphoma

      Volume: In press Issue: 11 Pages: 1-2

    • DOI

      10.1080/10428194.2018.1443335

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16K19570, KAKENHI-PROJECT-16H06277, KAKENHI-PLANNED-15H05912
  • [Journal Article] Circulating tumor DNA dynamically predicts response and/or relapse in patients with hematological malignancies2018

    • Author(s)
      Nakamura S, Yokoyama K, Yusa N, Ogawa M, Takei T, Kobayashi A, Ito M, Shimizu E, Kasajima R, Wada Y, Yamaguchi R, Imoto S, Nagamura-Inoue T, Miyano S, Tojo A
    • Journal Title

      Int J Hematol

      Volume: 108(4) Issue: 4 Pages: 402-410

    • DOI

      10.1007/s12185-018-2487-2

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03329
  • [Journal Article] Characterization of the B-cell receptor repertoires in peanut allergic subjects undergoing oral immunotherapy2018

    • Author(s)
      Kiyotani K, Mai TH, Yamaguchi R, Yew PY, Kulis M, Orgel K, Imoto S, Miyano S, Burks AW, Nakamura Y
    • Journal Title

      J Hum Genet

      Volume: 63(2) Issue: 2 Pages: 239-248

    • DOI

      10.1038/s10038-017-0364-0

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02775, KAKENHI-PROJECT-15K00399
  • [Journal Article] A novel adaptive penalized logistic regression for uncovering biomarker associated with anti-cancer drug sensitivity2017

    • Author(s)
      Park H, Shiraishi Y, Imoto S, Miyano S
    • Journal Title

      EEE/ACM Trans Comput Biol Bioinform

      Volume: - Issue: 4 Pages: 771-782

    • DOI

      10.1109/tcbb.2016.2561937

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Interaction-based feature selection for uncovering cancer driver genes through copy number-driven expression level2017

    • Author(s)
      Park H, Niida A, Imoto S, Miyano S
    • Journal Title

      J Comput Biol

      Volume: 24(2) Issue: 2 Pages: 138-152

    • DOI

      10.1089/cmb.2016.0140

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Identification of an immunogenic neo-epitope encoded by mouse sarcoma using CXCR3 ligand mRNAs as sensors2017

    • Author(s)
      Fujii K, Miyahara Y, Harada N, Muraoka D, Komura M, Yamaguchi R, Yagita H, Nakamura J, Sugino S, Okumura S, Imoto S, Miyano S, Shiku H
    • Journal Title

      OncoImmunology

      Volume: 印刷中 Issue: 5 Pages: e1306617-e1306617

    • DOI

      10.1080/2162402x.2017.1306617

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15H02775, KAKENHI-PROJECT-16K07168
  • [Journal Article] Different Clonal Dynamics of Chronic Myeloid Leukaemia between Bone Marrow and the Central Nervous System.2017

    • Author(s)
      Ogawa M, Yokoyama K, Hirano M, Jimbo K, Ochi K, Kawamata T, Ohno N, Shimizu E, Yokoyama N, Yamaguchi R, Imoto S, Uchimaru K, Takahashi N, Miyano S, Imai Y, and Tojo A.
    • Journal Title

      Br J Haematol

      Volume: - Issue: 5 Pages: 842-845

    • DOI

      10.1111/bjh.15065

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16K21012, KAKENHI-PROJECT-16H06277, KAKENHI-PLANNED-15H05912
  • [Journal Article] Identification of a p53-repressed gene module in breast cancer cells2017

    • Author(s)
      Miyamoto T, Tanikawa C, Yodsurang V, Zhang YZ, Imoto S, Yamaguchi R, Miyano S, Nakagawa H, Matsuda K
    • Journal Title

      Oncotarget

      Volume: 8(34) Issue: 34 Pages: 55821-55836

    • DOI

      10.18632/oncotarget.19608

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01566
  • [Journal Article] The Transcriptional Landscape of p53 Signalling Pathway2017

    • Author(s)
      Tanikawa C, Zhang YZ, Yamamoto R, Tsuda Y, Tanaka M, Funauchi Y, Mori J, Imoto S, Yamaguchi R, Nakamura Y, Miyano S, Nakagawa H, Matsuda K
    • Journal Title

      EBioMedicine

      Volume: 20 Pages: 109-119

    • DOI

      10.1016/j.ebiom.2017.05.017

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01566
  • [Journal Article] Whole genome sequencing discriminates hepatocellular carcinoma with intrahepatic metastasis from multi-centric tumors2017

    • Author(s)
      Furuta M, Ueno M, Fujimoto A, Hayami S, Yasukawa S, Kojima F, Arihiro K, Kawakami Y, Wardell CP, Shiraishi Y, Tanaka H, Nakano K, Maejima K, Sasaki-Oku A, Tokunaga N, Boroevich KA, Abe T, Aikata H, Ohdan H, Gotoh K, Kubo M, Tsunoda T, Miyano S, Chayama K, Yamaue H, Nakagawa H
    • Journal Title

      J Hepatol

      Volume: 66(2) Issue: 2 Pages: 363-373

    • DOI

      10.1016/j.jhep.2016.09.021

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26293308, KAKENHI-PROJECT-15K19915, KAKENHI-PROJECT-17K10675, KAKENHI-PROJECT-26430196, KAKENHI-PROJECT-15H04814
  • [Journal Article] Sequence-specific bias correction for RNA-seq data using recurrent neural networks2017

    • Author(s)
      Zhang Y-Z, Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      BMC Genomics

      Volume: 18(Suppl 1) Issue: S1 Pages: 1044-1044

    • DOI

      10.1186/s12864-016-3262-5

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H02676
  • [Journal Article] Genome-wide screening of DNA methylation associated with lymph node metastasis in esophageal squamous cell carcinoma2017

    • Author(s)
      Nagata Hiroaki、Kozaki Ken-Ichi、Muramatsu Tomoki、Hiramoto Hidekazu、Tanimoto Kousuke、Fujiwara Naoto、Imoto Seiya、Ichikawa Daisuke、Otsuji Eigo、Miyano Satoru、Kawano Tatsuyuki、Inazawa Johji
    • Journal Title

      Oncotarget

      Volume: 8 Issue: 23 Pages: 37740-37750

    • DOI

      10.18632/oncotarget.17147

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05908, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16K14630
  • [Journal Article] The hypusine cascade promotes cancer progression and metastasis through the regulation of RhoA in squamous cell carcinoma.2016

    • Author(s)
      Muramatsu T, Kozaki KI, Imoto S, Yamaguchi R, Tsuda H, Kawano T, Fujiwara N, Morishita M, Miyano S, Inazawa J.
    • Journal Title

      Oncogene

      Volume: - Issue: 40 Pages: 5304-5316

    • DOI

      10.1038/onc.2016.71

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18401, KAKENHI-PLANNED-15H05908, KAKENHI-PROJECT-25250019, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16K14630
  • [Journal Article] Adaptive penalized logistic regression for uncovering biomarker associated with anti-cancer drug sensitivity2016

    • Author(s)
      Park, H., Shiraishi, Y., Imoto, S., Miyano, S.
    • Journal Title

      IEEE IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 印刷中

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H01678
  • [Journal Article] Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population.2016

    • Author(s)
      G. Sawada (他43名, 山本21番目)
    • Journal Title

      Gastroenterology

      Volume: 150 Issue: 5 Pages: 1171-1182

    • DOI

      10.1053/j.gastro.2016.01.035

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496
  • [Journal Article] Whole genome mutational landscape and characterization of non-coding and structural mutations in liver cancer.2016

    • Author(s)
      Fujimoto A et al.
    • Journal Title

      Nat Genet

      Volume: 48 Issue: 5 Pages: 500-509

    • DOI

      10.1038/ng.3547

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-26114721, KAKENHI-PROJECT-15H04814, KAKENHI-PROJECT-26293308, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-26430196
  • [Journal Article] OVarCall: Bayesian mutation calling method utilizing overlapping paired-end reads2016

    • Author(s)
      Moriyama, T., Shiroishi, Y., Chiba, K., Yamaguchi, R., Imoto, S., Miyano, S.
    • Journal Title

      Lecture Notes in Bioinformatics

      Volume: 印刷中

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15H01678
  • [Journal Article] Reduced expression of APC-1B but not APC-1A by the deletion of promoter 1B is responsible for familial adenomatous polyposis2016

    • Author(s)
      Yamaguchi K, Nagayama S, Shimizu E, Komura M, Yamaguchi R, Shibuya T, Arai M, Hatakeyama S, Ikenoue T, Ueno M, Miyano S, Imoto S, Furukawa Y
    • Journal Title

      Sci Rep

      Volume: 6 Issue: 1 Pages: 26011-26011

    • DOI

      10.1038/srep26011

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01569
  • [Journal Article] Characterization of T-cell receptor repertoire in inflamed tissues of patients with crohn's disease through deep sequencing2016

    • Author(s)
      Chapman CG, Yamaguchi R, Tamura K, Weidner J, Imoto S, Kwon J, Fang H, Yew PY, Marino SR, Miyano S, Nakamura Y, Kiyotani K
    • Journal Title

      Inflamm Bowel Dis

      Volume: 22(6) Issue: 6 Pages: 1275-1285

    • DOI

      10.1097/mib.0000000000000752

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02775
  • [Journal Article] Variegated RHOA mutations in adult T-cell leukemia/lymphoma2016

    • Author(s)
      Nagata Y, Kontani K, Enami T, Kataoka K, Ishii R, Totoki Y, Kataoka TR, Hirata M, Aoki K, Nakano K, Kitanaka A, Sakata-Yanagimoto M, Egami S, Shiraishi Y, Chiba K, Tanaka H, Shiozawa Y, Yoshizato T, (9名), Miyano S, Nureki O, Shibata T, Haga H, Shimoda K, Katada T, Chiba S, Watanabe T, Ogawa S
    • Journal Title

      Blood

      Volume: 127 Issue: 5 Pages: 596-604

    • DOI

      10.1182/blood-2015-06-644948

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26893127, KAKENHI-PROJECT-14J03784, KAKENHI-PROJECT-26650029, KAKENHI-PROJECT-26290053, KAKENHI-PROJECT-26291038, KAKENHI-PROJECT-25461407, KAKENHI-PROJECT-23229001
  • [Journal Article] Gene set differential analysis of time course expression profiles via sparse estimation in functional logistic model with application to time-dependent biomarker detection2016

    • Author(s)
      Kayano M, Matsui H, Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      Biostatistics

      Volume: 17 Issue: 2 Pages: 235-248

    • DOI

      10.1093/biostatistics/kxv037

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02670, KAKENHI-PROJECT-24700290, KAKENHI-PROJECT-25730017, KAKENHI-PROJECT-25250017
  • [Journal Article] OVarCall: bayesian mutation calling method utilizing overlapping paired-end reads2016

    • Author(s)
      Moriyama T, Shiraishi Y, Chiba K, Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      IEEE Trans Nanobioscience

      Volume: 14 Issue: 2 Pages: 1-6

    • DOI

      10.1109/tnb.2017.2670601

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H02676
  • [Journal Article] Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity2015

    • Author(s)
      Fujimoto A, Furuta M, Shiraishi Y, Gotoh K, Kawakami Y, Arihiro K, Nakamura T, Ueno M, Ariizumi SI, Hai Nguyen H, Shigemizu D, Abe T, Boroevich KA, Nakano K, Sasaki A, Kitada R, Maejima K, Yamamoto Y, Tanaka H, Shibuya T, Shibata T, Ojima H, Shimada K, Hayami S, Shigekawa Y, Aikata H, Ohdan H, Marubashi S, et al.
    • Journal Title

      Nat Commun.

      Volume: 6 Pages: 6120-6120

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Attenuated familial adenomatous polyposis with desmoids by an APC mutation2015

    • Author(s)
      Ikenoue T, Yamaguchi K, Komura M, Imoto S, Yamaguchi R, Shimizu E, Kasuya S, Shibuya T, Hatakeyama S, Miyano S, Furukawa Y
    • Journal Title

      Human Genome Variation

      Volume: 2 Issue: 1 Pages: 15011-15011

    • DOI

      10.1038/hgv.2015.11

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015

    • Author(s)
      Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T
    • Journal Title

      MC Syst Biol

      Volume: 9(1) Pages: 14-14

    • NAID

      120005749949

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells2015

    • Author(s)
      T. Kato, H. Inoue, S. Imoto, Y. Tamada, T. Miyamoto, Y. Matsuo, Y. Nakamura and J.H. Park
    • Journal Title

      Oncotarget

      Volume: 7 Issue: 14 Pages: 17652-17664

    • DOI

      10.18632/oncotarget.7755

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912
  • [Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015

    • Author(s)
      Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T.
    • Journal Title

      BMC Systems Biology

      Volume: 9 Issue: 1 Pages: 14-14

    • DOI

      10.1186/s12918-015-0154-2

    • NAID

      120005749949

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24300111, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-25730173
  • [Journal Article] Genomon ITDetector: A tool for somatic internal tandem duplication detection from cancer genome sequencing data2015

    • Author(s)
      Chiba K, Shiraishi Y, Nagata Y, Yoshida K, Imoto S, Ogawa S, Miyano S
    • Journal Title

      Bioinformatics

      Volume: 30(1) Pages: 116-118

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Journal Article] A novel APC mosaicism in a patient with familial adenomatous polyposis.2015

    • Author(s)
      Moriya Iwaizumi, Ken Sugimoto, et al.
    • Journal Title

      Hum Genome Var

      Volume: 10 Issue: 1 Pages: 15057-15057

    • DOI

      10.1038/hgv.2015.57

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25460948, KAKENHI-PROJECT-25860530, KAKENHI-PROJECT-26860206, KAKENHI-PROJECT-25280105
  • [Journal Article] Sparse overlapping group lasso for integrative multi-omics analysis2015

    • Author(s)
      Park H, Niida A, Miyano S, Imoto S.
    • Journal Title

      Journal of Computational Biology

      Volume: 22 Issue: 2 Pages: 73-84

    • DOI

      10.1089/cmb.2014.0197

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24300111
  • [Journal Article] A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models2015

    • Author(s)
      Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S
    • Journal Title

      Computational Statistics & Data Analysis

      Volume: 94 Pages: 63-74

    • DOI

      10.1016/j.csda.2015.08.003

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H06008, KAKENHI-PROJECT-25730173
  • [Journal Article] Detection of APC mosaicism by next-generation sequencing in an FAP patient.2015

    • Author(s)
      Yamaguchi K, Komura M, Yamaguchi R, Imoto S, Shimizu E, Kasuya S, Shibuya T, Hatakeyama S, Takahashi N, Ikenoue T, Hata K, Tsurita G, Shinozaki M, Suzuki Y, Sugano S, Miyano S, Furukawa Y
    • Journal Title

      J Hum Genet

      Volume: 60(5) Issue: 5 Pages: 227-231

    • DOI

      10.1038/jhg.2015.14

    • NAID

      40020462565

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-26860206, KAKENHI-PROJECT-25280105
  • [Journal Article] Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome2015

    • Author(s)
      Ayada E, Niida A, Hasegawa T, Miyano S, Imoto S
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 9096 Pages: 12-23

    • DOI

      10.1007/978-3-319-19048-8_2

    • ISBN
      9783319190471, 9783319190488
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Quantitative characterization of T-cell repertoire in allogeneic hematopoietic stem cell transplant recipients2015

    • Author(s)
      Yew PY, Alachkar H, Yamaguchi R, Kiyotani K, Fang H, Yap KL, Liu HT, Wickrema A, Artz A, van Besien K, Imoto S, Miyano S, Bishop MR, Stock W, Nakamura Y
    • Journal Title

      Bone Marrow Transplantation

      Volume: 50 Issue: 9 Pages: 1227-1234

    • DOI

      10.1038/bmt.2015.133

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00399, KAKENHI-PLANNED-15H05912
  • [Journal Article] Genomon ITDetector: A tool for somatic internal tandem duplication detection from cancer genome sequencing data. Bioinformatics2015

    • Author(s)
      Chiba K, Shiraishi Y, Nagata Y, Yoshida K, Imoto S, Ogawa S, Miyano S.
    • Journal Title

      Bioinformatics

      Volume: 31(1) Pages: 116-118

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recursive random lasso (RRLasso) for identifying anti-cancer drug targets2015

    • Author(s)
      Park H, Imoto S, Miyano S
    • Journal Title

      PLoS One

      Volume: 10 Issue: 11 Pages: 147-152

    • DOI

      10.1371/journal.pone.0141869

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707
  • [Journal Article] Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs2015

    • Author(s)
      Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N
    • Journal Title

      Scientific Report

      Volume: 5 Issue: 1 Pages: 13076-13076

    • DOI

      10.1038/srep13076

    • NAID

      120005764206

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18426, KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-26640072, KAKENHI-PROJECT-25730173
  • [Journal Article] A feature selection method using fixed-point algorithm for DNA microarray gene expression data2014

    • Author(s)
      Sharma A, Paliwal KK, Imoto S, Miyano S, Sharma V, Ananthanarayanan R
    • Journal Title

      International Journal of Knowledge Based and Intelligent Engineering Systems

      Volume: 18(1) Pages: 55-59

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features2014

    • Author(s)
      Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T
    • Journal Title

      Carcinogenesis

      Volume: 35(10) Pages: 2224-2231

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] A feature selection method using improved regularized linear discriminant analysis2014

    • Author(s)
      Sharma A, Paliwal KK, Imoto S, Miyano S
    • Journal Title

      Mach Vis Appl.

      Volume: 25(3) Pages: 775-786

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Overexpression of cohesion establishment factor DSCC1 through E2F in colorectal cancer.2014

    • Author(s)
      Yamaguchi K, Rui Yamaguchi R, Takahashi N, Ikenoue T, Fujii T, Shinozaki M, Tsurita G, Hata K, Niida A, Imoto S, Miyano S, Nakamura Y, Furukawa Y
    • Journal Title

      PLoS ONE

      Volume: 9 Issue: 1 Pages: e85750-e85750

    • DOI

      10.1371/journal.pone.0085750

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23310137, KAKENHI-PROJECT-25280105
  • [Journal Article] HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations2014

    • Author(s)
      Usuyama N, Shiraishi Y, Sato Y, Kume H, Homma Y, Ogawa S, Miyano S, Imoto S
    • Journal Title

      Bioinformatics

      Volume: 30(23) Pages: 3302-3309

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Cost-effective length and timing of school closure during an influenza pandemic depend on the severity2014

    • Author(s)
      H. Nishiura, K. Ejima, K. Mizumoto, S. Nakaoka, H. Inaba, S. Imoto, R. Yamaguchi, M.M. Saito
    • Journal Title

      Theoretical Biology and Medical Modelling

      Volume: 11 Pages: 5-5

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Allelic Imbalance at an 8q24 Oncogenic SNP is involved in activating MYC in human colorectal cancer2014

    • Author(s)
      Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K
    • Journal Title

      Ann Surg Oncol

      Volume: 21 Suppl 4 Pages: 515-521

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-course Observation Data2014

    • Author(s)
      T. Hasegawa, T. Mori, R. Yamaguchi, S. Miyano, T. Akutsu
    • Journal Title

      Journal of Computational Biology

      Volume: 21 Issue: 11 Pages: 785-798

    • DOI

      10.1089/cmb.2014.0171

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-12J09639, KAKENHI-PROJECT-24300111
  • [Journal Article] Somatic RHOA mutation in angioimmunoblastic T cell lymphoma2014

    • Author(s)
      Sakata-Yanagimoto M, Enami T, Yoshida K, Shiraishi Y, Ishii R, Miyake Y, Muto H, Tsuyama N, Sato-Otsubo A, Okuno Y, Sakata S, Kamada Y, Nakamoto-Matsubara R, et. al.
    • Journal Title

      Nat Genet.

      Volume: 46(2) Pages: 171-175

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Analysis of Questionnaire for Traditional Medicine and Development of Decision Support System2014

    • Author(s)
      Kotoe Katayama, Rui Yamaguchi, Seiya Imoto, Kenji Watanabe and Satoru Miyano
    • Journal Title

      Evidence-Based Complementary and Alternative Medicine

      Volume: 2014 Issue: 1 Pages: 974139-974139

    • DOI

      10.1155/2014/974139

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24300111
  • [Journal Article] An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data2014

    • Author(s)
      Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T
    • Journal Title

      J Comput Biol

      Volume: 21(11) Pages: 785-798

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers2014

    • Author(s)
      Shiraishi Y, Fujimoto A, Furuta M, Tanaka H, Chiba K, Boroevich KA, Abe T, Kawakami Y, Ueno M, Gotoh K, Ariizumi S, Shibuya T, Nakano K, Sasaki A, Maejima K, Kitada R, Hayami S, Shigekawa Y, Marubashi S, Yamada T, Kubo M, et. al.
    • Journal Title

      PLoS One

      Volume: 9(12)

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker2014

    • Author(s)
      Park H, Shimamura T, Miyano S, Imoto S
    • Journal Title

      PLoS One

      Volume: 9(1)

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations2014

    • Author(s)
      Usuyama N, Shiraishi Y, Sato Y, Kume H, Homma Y, Ogawa S, Miyano S, Imoto S.
    • Journal Title

      Bioinformatics

      Volume: 30(23) Pages: 3302-3309

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Journal Article] An efficient method of exploring simulation models by assimilating literature and biological observational data2014

    • Author(s)
      Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      Biosystems

      Volume: 121 Pages: 54-66

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] The rs6983267 SNP is associated with MYC transcription efficiency, which promotes progression and worsens prognosis of colorectal cancer2013

    • Author(s)
      Takatsuno Y, Mimori K, Yamamoto K, Sato T, Niida A, Inoue H, Imoto S, Kawano S, Yamaguchi R, Toh H, Iinuma H, Ishimaru S, Ishii H, Suzuki S, Tokudome S, Watanabe M, Tanaka JI, Kudo SE, Mochizuki H, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Miyano S, Sugihara K, Mori M
    • Journal Title

      Ann Surg Oncol.

      Volume: 20(4) Pages: 1395-1402

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Principal component analysis using QR decomposition2013

    • Author(s)
      Sharma A, Paliwal KK, Imoto S, Miyano S
    • Journal Title

      International J Machine Learning and Cybernetics

      Volume: 4(6) Pages: 679-683

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Multi-omics approach for estimating metabolic networks using low-order partial correlations2013

    • Author(s)
      Kayano M, Imoto S, Yamaguchi R, Miyano S.
    • Journal Title

      J Comput Biol.

      Volume: 20(8) Pages: 571-582

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis2013

    • Author(s)
      Affara M, Sanders D, Araki H, Tamada Y, Dunmore B, Humphreys S, Imoto S, Savoie C, Miyano S, Kuhara S, Print C, Charnock-Jones DS
    • Journal Title

      BMC Genomics

      Volume: 14(1) Issue: 1 Pages: 23-23

    • DOI

      10.1186/1471-2164-14-23

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099, KAKENHI-PLANNED-22134004
  • [Journal Article] Molecular features of triple negative breast cancer cells by genome-wide gene expression profiling analysis.2013

    • Author(s)
      Komatsu M, Yoshimaru T, Matsuo T, Kiyotani K, Miyoshi Y, Tanahashi T, Rokutan K, Yamaguchi R, Saito A, Imoto S, Miyano S, Nakamura Y, Sasa M, Shimada M, Katagiri T.
    • Journal Title

      Int J Oncol.

      Volume: 42(2) Issue: 2 Pages: 478-506

    • DOI

      10.3892/ijo.2012.1744

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21119003, KAKENHI-PROJECT-22390146, KAKENHI-PROJECT-24501342, KAKENHI-PROJECT-25670352, KAKENHI-PLANNED-22134004, KAKENHI-PUBLICLY-23134504
  • [Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2013

    • Author(s)
      Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(8) Pages: 860-867

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis2013

    • Author(s)
      Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M
    • Journal Title

      Cancer Res.

      Volume: 73(7) Pages: 2059-2069

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition2013

    • Author(s)
      Sharma A, Paliwal KK, Dehzangi A, Lyons J, Imoto S, Miyano S.
    • Journal Title

      BMC Bioinformatics

      Volume: 14(1) Pages: 233-233

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Multilayer cluster heat map visualizing biological tensor data2013

    • Author(s)
      Niida A, Tremmel G, Imoto S, Miyano S.
    • Journal Title

      Lecture Notes in Bioinformatics

      Volume: 8213 Pages: 116-125

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms2013

    • Author(s)
      Kon A, Shih LY, Sanada M, Shiraishi Y, Okuno Y, Nagae G, Nishimoto A, Nowak D, Sato Y, Shimamura T, Tanaka H, Chiba K, Yamaguchi T, Otsu M, Obara N, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(10) Pages: 1232-1237

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan2013

    • Author(s)
      M.M. Saito, S. Imoto, R. Yamaguchi, H. Sato, H. Nakada, M. Kami, S. Miyano, T. Higuchi
    • Journal Title

      Mathematical Biosciences

      Volume: 246(1) Pages: 47-54

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] The Tumor-suppressive mir-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinoma.2013

    • Author(s)
      Furuta M
    • Journal Title

      PLoS One

      Volume: 8 Issue: 3 Pages: e60155-e60155

    • DOI

      10.1371/journal.pone.0060155

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-22130001, KAKENHI-PLANNED-22134002, KAKENHI-PROJECT-22240090, KAKENHI-PROJECT-23390077, KAKENHI-PROJECT-25250019, KAKENHI-PROJECT-25253081, KAKENHI-PROJECT-25640062, KAKENHI-PROJECT-25730173, KAKENHI-PLANNED-22134004
  • [Journal Article] Enhancement of collective immunity by selective vaccination against emerging influenza pandemic2013

    • Author(s)
      M.M. Saito, S. Imoto, R. Yamaguchi, M. Tsubokura, M. Kami, H. Nakada, H. Sato, S. Miyano, T. Higuchi
    • Journal Title

      PLoS ONE

      Volume: 8(9)

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan2013

    • Author(s)
      Saito MM, Imoto S, Yamaguchi R, Sato H, Nakada H, Kami M, Miyano S, Higuchi T.
    • Journal Title

      Math Biosci.

      Volume: 246 Issue: 1 Pages: 47-54

    • DOI

      10.1016/j.mbs.2013.08.009

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Multi-omics approach for estimating metabolic networks using low-order partial correlations2013

    • Author(s)
      Kayano M, Imoto S, Yamaguchi R, Miyano S
    • Journal Title

      Journal of Computational Biology

      Volume: 20 Issue: 8 Pages: 571-582

    • DOI

      10.1089/cmb.2013.0043

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24300111, KAKENHI-PROJECT-24700290
  • [Journal Article] Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells2013

    • Author(s)
      Yoshimaru T, Komatsu M, Matsuo T, Chen YA, Murakami Y, Mizuguchi K, Mizohata E, Inoue T, Akiyama M, Yamaguchi R, Imoto S, Miyano S, Miyoshi Y, Sasa M, Nakamura Y, Katagiri T
    • Journal Title

      Nature Commun.

      Volume: 4 Pages: 2443-2013

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Enhancement of Collective Immunity in Tokyo Metropolitan Area by Selective Vaccination against an Emerging Influenza Pandemic2013

    • Author(s)
      Masaya M. Saito mail, Seiya Imoto, Rui Yamaguchi, Masaharu Tsubokura, Masahiro Kami, Haruka Nakada, Hiroki Sato, Satoru Miyano, Tomoyuki Higuchi
    • Journal Title

      PLoS ONE

      Volume: 8 Issue: 9 Pages: 1-1

    • DOI

      10.1371/journal.pone.0072866

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23650143, KAKENHI-PROJECT-25730181
  • [Journal Article] Cell cycle gene networks are associated with melanoma prognosis2012

    • Author(s)
      Wang L, Hurley D, Watkins W, Araki H, Tamada Y, Muthukaruppan A, Ranjard L, Derkac E, Imoto S, Miyano S, Crampin E, Print C
    • Journal Title

      PLoS One

      Volume: 7(4) Issue: 4 Pages: e34247-e34247

    • DOI

      10.1371/journal.pone.0034247

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099, KAKENHI-PLANNED-22134004
  • [Journal Article] A top-r feature selection algorithm for microarray gene expression data2012

    • Author(s)
      Sharma A, Imoto S, Miyano S
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 9(3) Issue: 3 Pages: 754-764

    • DOI

      10.1109/tcbb.2011.151

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Computational gene network analysis reveals TNF-induced angiogenesis2012

    • Author(s)
      Ogami K, Yamaguchi R, Imoto S, Tamada Y, Araki H, Print C, Miyano S
    • Journal Title

      BMC Systems Biology

      Volume: 6(Supple 2) Issue: S2

    • DOI

      10.1186/1752-0509-6-s2-s12

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24700292, KAKENHI-PLANNED-22134004
  • [Journal Article] Statistical model-based testing to evaluate the recurrence of genomic aberrations2012

    • Author(s)
      Niida A, Imoto S, Shimamura T, Miyano S
    • Journal Title

      Bioinformatics

      Volume: 28(12) Issue: 12 Pages: i115-i120

    • DOI

      10.1093/bioinformatics/bts203

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Identifiability of local transmissibility parameters in agent-based pandemic simulation2012

    • Author(s)
      M. Saito, S. Imoto, R. Yamaguchi, S. Miyano, T. Higuchi
    • Journal Title

      Proc. 14th International Conference on Information FUSION

      Pages: 2466-2471

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Parallel agent-based simulator for inuenza pandemic2012

    • Author(s)
      M. Saito, S. Imoto, R. Yamaguchi, S. Miyano, T. Higuchi
    • Journal Title

      Lecture Note in Computer Science

      Volume: 7068 Pages: 361-370

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma2012

    • Author(s)
      後藤 典子
    • Journal Title

      PLoS ONE

      Volume: 7 Issue: 9 Pages: e43923-e43923

    • DOI

      10.1371/journal.pone.0043923

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130009, KAKENHI-PROJECT-22300099, KAKENHI-PROJECT-23390062, KAKENHI-PLANNED-22134004
  • [Journal Article] Identifying Gene pathways associated with cancer characteristics via sparse statistical methods2012

    • Author(s)
      Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 9(4) Issue: 4 Pages: 966-972

    • DOI

      10.1109/tcbb.2012.48

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Increased Risk for CRC in Diabetic Patients with the Nonrisk Allele of SNPs at 8q242012

    • Author(s)
      Ishimaru S, Iinuma H, et al
    • Journal Title

      Ann Surg Oncol

      Volume: 21(in press) Issue: 9 Pages: 21-21

    • DOI

      10.1245/s10434-012-2278-6

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21591734, KAKENHI-PROJECT-21592014, KAKENHI-PROJECT-22570172, KAKENHI-PROJECT-23390199, KAKENHI-PROJECT-24591984, KAKENHI-PLANNED-22134004, KAKENHI-PUBLICLY-23112514
  • [Journal Article] Gene network inference and visualization tools for biologists: application to new human transcriptome datasets2012

    • Author(s)
      Hurley D, Araki H, Tamada Y, (4名), Imoto S, Yasuda K, Tomiyasu Y, Tashiro K, Savoie C, Cho V, Smith S, Kuhara S, Miyano S, Charnock-Jones DS, Crampin EJ, Print CG
    • Journal Title

      Nucleic Acids Res

      Volume: 40(6) Issue: 6 Pages: 2377-2398

    • DOI

      10.1093/nar/gkr902

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators.2012

    • Author(s)
      Fujimoto A, Totoki Y, Abe T, Boroevich KA, Hosoda F, Nguyen HH, Aoki M, Hosono N, Kubo M, Miya F, Arai Y, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, Shigekawa Y, Kawakami Y, Arihiro K, Ohdan H, Gotoh K, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, Kamatani N, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, Nakagawa H
    • Journal Title

      Nature Genetic

      Volume: 44 Issue: 7 Pages: 760-764

    • DOI

      10.1038/ng.2291

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22310123, KAKENHI-PROJECT-24659368, KAKENHI-PLANNED-22116010, KAKENHI-PLANNED-22134004, KAKENHI-PLANNED-22134008
  • [Journal Article] A between-class overlapping filter-based method for transcriptome data analysis2012

    • Author(s)
      Sharma A, Imoto S, Miyano S
    • Journal Title

      J Bioinformatics and Computational Biology

      Volume: 10(5) Issue: 05 Pages: 1250010-1250010

    • DOI

      10.1142/s0219720012500102

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Parallel agent-based simulator for inuenza pandemic, Proc. DOCMAS, Lecture Note in Computer Science2012

    • Author(s)
      M.M. Saito, S. Imoto, R. Yamaguchi, S. Miyano, T. Higuchi
    • Journal Title

      Springer-Verlag

      Volume: 7068 Pages: 361-370

    • Data Source
      KAKENHI-PROJECT-23650143
  • [Journal Article] Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing2012

    • Author(s)
      後藤 典子
    • Journal Title

      BMC Genomics

      Volume: Suppl. 1, Issue: S1

    • DOI

      10.1186/1471-2164-13-s1-s6

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130009, KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-23390062
  • [Journal Article] N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells2011

    • Author(s)
      Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N
    • Journal Title

      Am J Cancer Res

      Volume: 1(7) Pages: 828-833

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Comprehensive pharmacogenomic pathway screening by data assimilation2011

    • Author(s)
      T.Hasegawa, R.Yamaguchi, M.Nagasaki, S.Imoto, S.Miyano
    • Journal Title

      LNCS (Springer-Verlag) in press.

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Comprehensive pharmacogenomic pathway screening by data assimilation2011

    • Author(s)
      T.Hasegawa, R.Yamaguchi, M.Nagasaki, S.Imoto, S.Miyano
    • Journal Title

      Proc.7th International Symposium on Bioinformatics Research and Applications(査読付き国際会議論文)

      Volume: (印刷中)(掲載確定)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] SiGN : large-scale gene network estimation environment for high performance computing2011

    • Author(s)
      Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S
    • Journal Title

      Genome Informatics

      Volume: 25 Pages: 40-52

    • NAID

      130004567842

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Frequent pathway mutations of splicing machinery in myelodysplasia2011

    • Author(s)
      Kenichi Yoshida
    • Journal Title

      Nature

      Volume: 478 Issue: 7367 Pages: 64-69

    • DOI

      10.1038/nature10496

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130002, KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-22390191, KAKENHI-PROJECT-22659058, KAKENHI-PROJECT-22790895, KAKENHI-PLANNED-23106004, KAKENHI-PUBLICLY-23118503, KAKENHI-PROJECT-23390269, KAKENHI-PROJECT-23659482, KAKENHI-PROJECT-23659533, KAKENHI-PROJECT-23791068, KAKENHI-PROJECT-23791075
  • [Journal Article] A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition2011

    • Author(s)
      Shimamura, T., Imoto, S., Shimada, Y., Hosono, Y., Niida, A., Nagasaki, M., Yamaguchi, R., Takahashi, T., Miyano, S
    • Journal Title

      PLoS ONE

      Volume: 6 Issue: 6 Pages: e20804-e20804

    • DOI

      10.1371/journal.pone.0020804

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21249037, KAKENHI-PLANNED-22134004, KAKENHI-PLANNED-22134005
  • [Journal Article] Searching optimal Bayesian network structure on constraint search space:super-structure approach02011

    • Author(s)
      Imoto S, Kojima K, Perrier E, Tamada Y, Miyano S
    • Journal Title

      LectureNotes in Computer Science

      Volume: 6797 Pages: 210-218

    • DOI

      10.1007/978-3-642-25655-4_19

    • ISBN
      9783642256547, 9783642256554
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] Parallel algorithm for learning optimal Bayesian network structure2011

    • Author(s)
      Tamada Y, Imoto S, Miyano S
    • Journal Title

      J Machine Learning Research

      Volume: 12 Pages: 2437-2459

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers2011

    • Author(s)
      Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 8(3) Issue: 3 Pages: 683-697

    • DOI

      10.1109/tcbb.2010.68

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Comprehensive pharmacogenomic pathway screening by data assimilation2011

    • Author(s)
      Hasegawa T, Yamaguchi R, Nagasaki M, Imoto S, Miyano S
    • Journal Title

      Lecture Notes in Bioinformatics

      Volume: 6674 Pages: 160-171

    • DOI

      10.1007/978-3-642-21260-4_18

    • ISBN
      9783642212598, 9783642212604
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-22300099
  • [Journal Article] SiGN-SSM : open source parallel software for estimating gene networks with state space models2011

    • Author(s)
      Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S
    • Journal Title

      Bioinformatics

      Volume: 27(8) Issue: 8 Pages: 1172-1173

    • DOI

      10.1093/bioinformatics/btr078

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-22300099, KAKENHI-PROJECT-22700308, KAKENHI-PROJECT-23700346
  • [Journal Article] Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing2010

    • Author(s)
      Fujimoto, A., Nakagawa, H., Hosono, N., Nakano, K., Abe, G., Boroevich, K.A., Nagasaki, M., Yamaguchi, R., Shibuya, T., Kubo, M., Miyano, S., Nakamura, Y., Tsunoda, T.
    • Journal Title

      Nature Genetics

      Volume: 42 Pages: 931-936

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Model-free unsupervised gene set screening based on information enrichment in expression profiles2010

    • Author(s)
      A.Niida, S.Imoto, R.Yamaguchi, M.Nagasaki, A.Fujita, T.Shimamura, S.Miyano
    • Journal Title

      Bioinformatics

      Volume: 26 Pages: 3090-3097

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Identifying hidden confounders in gene networks by Bayesian networks2010

    • Author(s)
      Higashigaki, T., Kojima, K., Yamaguchi, R., Inoue, M., Imoto, S., Miyano, S.
    • Journal Title

      Proc.10th IEEE Bioinformatics and Bioengineering

      Pages: 168-173

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues2010

    • Author(s)
      A.Niida, S.Imoto, R.Yamaguchi, M.Nagasaki, S.Miyano
    • Journal Title

      PLoS One 5(6)

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Inferring dynamic gene networks under varying conditions for transcriptomic network comparison2010

    • Author(s)
      T.Shimamura, S.Imoto, R.Yamaguchi, M.Nagasaki, S.Miyano
    • Journal Title

      Bioinformatics 26

      Pages: 1064-1072

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning2010

    • Author(s)
      Kawano, S., Shimamura, T., Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Yoshida, R., Print, C., Miyano, S.
    • Journal Title

      Proc.IEEE 10th International Symposium on Bioinformatics & Bioengineering

      Pages: 253-258

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Discovery of exogenous variables in data with more variables than observations2010

    • Author(s)
      Y.Sogawa, S.Shimizu, A.Hyvarinen, T.Washio, T.Shimamura, S.Imoto
    • Journal Title

      Proc.20th International Conference on Artificial Neural Networks(査読付き国際会議論文)

      Pages: 67-76

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] Discovering Functional Gene Pathways Associated with Cancer Heterogeneity via Sparse Supervised Learning2010

    • Author(s)
      Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Criatin Print, Satoru Miyano
    • Journal Title

      Proc.IEEE International Conference on Bioinorrmatics and Biomedicine(査読付き国際会議論文)

      Pages: 253-258

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] Model-free unsupervised gene set screening based on information enrichment in expression profiles2010

    • Author(s)
      Niida, S.Imoto, R.Yamaguchi, M.Nagasaki, A.Fujita, T.Shimamura, S.Miyano
    • Journal Title

      Bioinformatics

      Pages: 3090-3097

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Optimal search on clustered structural constraint for learning Bayesian network structure2010

    • Author(s)
      K.Kojima, E.Perrier, S.Imoto, S.Miyano
    • Journal Title

      Journal of Machine Learning Research 11

      Pages: 285-310

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Network-based predictions and simulations by biological state space mo dels : Search for drug mode of action2010

    • Author(s)
      Yamaguchi, R., Imoto, S., Miyan o, S.
    • Journal Title

      J.Computer Science and Technology

      Volume: 25(1) Pages: 131-153

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues2010

    • Author(s)
      Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Miyano, S.
    • Journal Title

      PLoS ONE

      Volume: 5(6):e10910(掲載確定)

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Identifying hidden confounders in gene networks by Bayesian networks2010

    • Author(s)
      Higashigaki, T., Kojima, K., Yamaguchi, R., Inoue, M., Imoto, S., Miyano, S.
    • Journal Title

      Proc.10th IEEE Bioinformatics and Bioengineering

      Pages: 168-173

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] Gene regulatory network clustering for graph layout based on microarray gene expression data2010

    • Author(s)
      Kojima, K., Imoto, S., Nagasaki, M., Miyano, S.
    • Journal Title

      Genome Informatics

      Volume: 24 Pages: 84-95

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning2010

    • Author(s)
      S.Kawano, T.Shimamura, A.Niida, S.Imoto, R.Yamaguchi, M.Nagasaki, R.Yoshida, C.Print, S.Miyano
    • Journal Title

      IEEE Bioinformatics and Biomedicine

      Pages: 253-258

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Collocation-based sparse estimation for constructing dynamic gene networks2010

    • Author(s)
      Shimamura, T., Imoto, S., Nagasaki, M., Yamauchi, M., Yamaguchi, R., Fujita, A., Tamada, Y, Gotoh, N., Miyano, S.
    • Journal Title

      Genome Informatics

      Volume: 24 Pages: 164-178

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.2010

    • Author(s)
      T.Shimamura, S.Imoto, R.Yamaguchi, M.Nagasaki, S.Miyano
    • Journal Title

      Bioinformatics 26(8)

      Pages: 1064-1072

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Inferring dynamic gene networks under varying conditions for transcriptomic network comparison2010

    • Author(s)
      Shimamura, T., Imoto, S., Yamaguchi, R., Nagasaki, M., Miyano, S.
    • Journal Title

      Bioinformatics

      Volume: 26(8) Pages: 1064-1072

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Network-based predictions and simulations by biological state space models: Search for drug mode of action. J2010

    • Author(s)
      Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      Computer Science and Technology

      Volume: 25(1) Issue: 1 Pages: 131-153

    • DOI

      10.1007/s11390-010-9311-7

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] Model-free unsupervised gene set screening based on information enrichment in expression profiles2010

    • Author(s)
      Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Fujita, A., Shimamura, T., Miyano, S.
    • Journal Title

      Bioinformatics

      Volume: 26(24) Pages: 3090-3097

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues2010

    • Author(s)
      A.Niida, S.Imoto, R.Yamaguchi, M.Nagasaki, S.Miyano
    • Journal Title

      PLoS One

      Volume: 5(電子ジャーナル)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Identifying hidden confounders in gene networks by Bayesian networks. Proc.2010

    • Author(s)
      Higashigaki T, Kojima K, Yamaguchi R, Inoue M, Imoto S, Miyano S.
    • Journal Title

      10th IEEE Bioinformatics and Bioengineering

      Pages: 168-173

    • URL

      http://doi.ieeecomputersociety.org/10.1109/BIBE.2010.35

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] Gene regulatory network clustering for graph layout based on microarray gene expression data2010

    • Author(s)
      Kojima, K., Imoto, S., Nagasaki, M., Miyano, S.
    • Journal Title

      Genome Informatics

      Volume: 24 Pages: 84-95

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Journal Article] A state space representation of VAR models with sparse learning for dynamic gene networks2009

    • Author(s)
      Kojima, K., Yamaguchi, R., Imoto, S., Yamauchi, M., Nagasaki, M., Yoshida, R., Shimamura, T., Ueno, K., Higuchi, T., Gotoh, N., Miyano, S.
    • Journal Title

      Genome Informatics 22

      Pages: 56-68

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks2009

    • Author(s)
      Y. Tamada, H. Araki, S. Imoto, et al.
    • Journal Title

      Pacific Symposium on Biocomputing Vol. 14

      Pages: 251-263

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells2009

    • Author(s)
      A.Niida, S.Imoto, M.Nagasaki, R.Yamaguchi, S.Miyano
    • Journal Title

      Genome Informatics 22

      Pages: 121-131

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Unraveling dynamic activities of autoacine pathways that control drug-response transcriptome networks2009

    • Author(s)
      Y. Tamada^*, H. Araki^*, S. Imoto^* et.al. (16人中3番目, *Equqally confiibution)
    • Journal Title

      Pacific Symposium on Biocomputing 14

      Pages: 251-262

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Unraveling dynamic activities of autoacine pathways that control drug-response transcriptome networks2009

    • Author(s)
      H.Araki, Y.Tamada, S.Imoto, et al., その他13人
    • Journal Title

      Pacific Symposium on Biocomputing 14

      Pages: 251-263

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] Recursive regularization for inferring gene networks from time-course gene expression profiles2009

    • Author(s)
      Shimamura, T., Imoto, S., Yamaguchi, R., Fujita, A., Nagasaki, M., Miyano, S.
    • Journal Title

      BMC Systems Biology 3

      Pages: 41-41

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Unraveling dynamic activities of autoacine pathways that control drug-response transcriptome networks2009

    • Author(s)
      Y.Tamada, H.raki, S.Imoto, M.Nagasaki, A.Doi, Y.Nakinishi, Y.Tomiyasu, K.Yasuda, B.Dunmore, D.Sanders, S.Humphries, C.Print, D.S.Charnock-Jones, K.Tashiro, S.Kuhara, S.Miyano
    • Journal Title

      Pacific Symposium on Biocomputing 14

      Pages: 251-263

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine2009

    • Author(s)
      Watanabe-Fukuda, Y., Yamamoto, M., Miura, N., Fukutake, M., Ishige, A., Yamaguchi, R., Nagasaki, M., Saito, A., Imoto, S., Miyano, S., Takeda, J., Watanabe, K.
    • Journal Title

      J.Gastroenterology 44(5)

      Pages: 380-389

    • NAID

      10025174631

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Unraveling dynamic activities of autocrine pathways that control drug-esponse transcriptome networks2009

    • Author(s)
      Tamada, Y., Araki, H., Imoto, S., Nagasaki, M., Doi, A., Nakanishi, Y. Tomiyasu, Y., Yasuda, K., Dunmore, B., Sanders, D., Humphreys, S., Print, C., Charnock-Jones, D. S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 14

      Pages: 251-263

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks2009

    • Author(s)
      Y. Tamada, H. Araki, S. Imoto, M. Nagasaki, A. Doi, Y. Nakanishi, Y. Tomiyasu, K. Yasuda, B. Dunmore, D. Sanders, S. Humphries, C. Print, D.S. Charnock-Jones, K. Tashiro, S. Kuhara, S. Miyano
    • Journal Title

      Pacific Symposium on Biocomputing Vol.14

      Pages: 251-263

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine2009

    • Author(s)
      Watanabe, Y., Yamamoto, M., Miura, N., Fukutake, M., Ishige, A., Yamaguchi, R., Nagasaki, M., Saito, A., Imoto, S., Miyano, S., Takeda, J., Watanabe, K.
    • Journal Title

      J. Gastroenterology (印刷中)

    • NAID

      10025174631

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells2009

    • Author(s)
      Niida, A., Imoto, S., Nagasaki, M., Yamaguchi, R., Miyano, S.
    • Journal Title

      Genome Informatics 22

      Pages: 121-131

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] BFL: a node and edge betweenness based fast layout algorithm for large scale networks2009

    • Author(s)
      Hashimoto, T.B., Nagasaki, M., Kojima, K., Miyano, S.
    • Journal Title

      BMC Bioinformatics 10

      Pages: 19-19

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Gene set-based module discovery in the breast cancer transcriptome2009

    • Author(s)
      A.Niida, A.D.Smith, S.Imoto, S.Tsutsumi, H.Aburatani, M.Q.Zhang, T.kiyama
    • Journal Title

      BMC Bioinformatics 10

      Pages: 71-71

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks2009

    • Author(s)
      Tamada, Y., Araki, H., Imoto, S., Nagasaki, M., Doi, A., Nakanishi, Y., Tomiyasu, Y., Yasuda, K., Dunmore, B., Sanders, D., Humphreys, S., Print, C., Charnock-Jones, D.S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 14

      Pages: 251-263

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Analysis of PPAR alpha-dependent and PPAR alpha-independent transcript regulation following fenofibrate treatment of human endothelial cells2009

    • Author(s)
      H.Araki, Y.Tamada, S.Imoto, et al., その他13人
    • Journal Title

      Angiogenesis 12

      Pages: 221-229

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] BFL : a node and edge betweenness based fast layout algorithm for large scale networks2009

    • Author(s)
      Hashimoto, T.B., Nagasaki, M., Kojima, K., Miyano, S.
    • Journal Title

      BMC Bioinformatics 10

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Gene set-based module discovery in the breast cancer transcriptome2009

    • Author(s)
      A. Niida, A.D. Smith, S. Imoto, S. Tsutsumi, H. Aburatani, M. Q. Zhang and T. Akiyama
    • Journal Title

      BMC Bioinformatics 10(電子ジャーナルのため頁なし)

      Pages: 71-71

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Bayesian learning of biological pathways on genomic data assimilation2008

    • Author(s)
      R. Yoshida, M. Nagasaki, R. Yamaguchi, S. Imoto, S. Miyano, T. Higuchi
    • Journal Title

      Bioinformatics 24

      Pages: 2562-2601

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models2008

    • Author(s)
      Hirose, O., Yoshida, R., Imoto, S., Yamaguchi, R., Higuchi, T., Charnock-Jones, D.S., Print, C., Miyano, S.
    • Journal Title

      Bioinformatics 24(7)

      Pages: 932-942

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      Yamaguchi, R., Imoto, S., Yamauchi, M., Nagasaki, M., Yoshida, R., Shimamura, T., Hatanaka, Y., Ueno, K., Higuchi, T., Gotoh, N., Miyano, S.
    • Journal Title

      Genome Informatics 21

      Pages: 101-113

    • NAID

      130003997534

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models2008

    • Author(s)
      O. Hirose, R. Yoshida, S. Imoto, R. Yamaguchi, T. Higuchi, D.S. Charnock-Jones, C. Print, S. Miyano
    • Journal Title

      Bioinformatics Vol.24,No.7

      Pages: 932-942

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Estimation of nonlinear gene regulatory networks via Ll regularized NVAR from time series gene expression data2008

    • Author(s)
      Kojima, K., Fujita, A., Shi mamura, T., Imoto, S. Miyano, S.
    • Journal Title

      Genome Informatics 20

      Pages: 357-360

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] ExonMiner: Web service for analysis of GeneChip exon array data2008

    • Author(s)
      Numata, K., Yoshida, R., Nagasaki, M., Saito, S., Imoto, S., Miyano, S.
    • Journal Title

      BMC Bioinformatics 9

      Pages: 494-494

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Partial, order-based Bayesian network learning algorithm for estimating gene networks2008

    • Author(s)
      Numata, K. Imoto, S. , Miyano, S.
    • Journal Title

      Proc. IEEE Bioinformatics and Biomedicine 2008

      Pages: 357-360

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Analyzing time course gene expression data with biological and technical replicates to estimate gene networks by state space models2008

    • Author(s)
      Hirose, O., Yoshida, R., Yamaguchi, R. Imoto, S. Higuchi, T., Miyano, S.
    • Journal Title

      Proc. 2nd Asia International Conference on Modelling & Simulation 2

      Pages: 940-946

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      R. Yamaguchi, S. Imoto, M. Yamauchi, M. Nagasaki, R. Yoshida, T. Shimamura, Y. Hatanaka, K. Ueno, T. Higuchi, N. Gotoh, S. Miyano
    • Journal Title

      Genome Informatics Vol.21

      Pages: 101-113

    • NAID

      130003997534

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      R. Yamaguchi, S. Imoto, et al.
    • Journal Title

      Genome Informatics Vol. 21

      Pages: 101-113

    • NAID

      130003997534

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data2008

    • Author(s)
      K. Kojima, A. Fujita, T. Shimamura, S. Imoto, S. Miyano
    • Journal Title

      Genome Informatics Vol. 20

      Pages: 37-51

    • NAID

      130003997510

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models2008

    • Author(s)
      O. Hirose, R. Yoshida, S. Imoto, R. Yamaguchi, T. Higuchi, D. S. Charnock-Jones, C. Print, S. Miyano
    • Journal Title

      Bioinformatics Vol. 24, No.7

      Pages: 932-942

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Bayesian learning of biological pathways on genomic data assimilation2008

    • Author(s)
      R. Yoshida, M. Nagasaki, R. Yamaguchi, S. Imoto, S. Miyano, T. Higuchi
    • Journal Title

      Bioinformatics Vol.24, No.22

      Pages: 2592-2601

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Finding optimal Bayesian network given a super-structure2008

    • Author(s)
      E. Perrier, S. Imoto, S. Miyano
    • Journal Title

      Journal of Machine Learning Research Vol.9

      Pages: 2251-228

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Bayesian learning of biological pathways on genomic data assimilation2008

    • Author(s)
      R. Yoshida, M. Nagasaki, R. Yamaguchi, S. Imoto, S. Miyano, T. Higuchi
    • Journal Title

      Bioinformatics Vol.24,No.22

      Pages: 592-2601

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Bayesian learning of biological pathways on genomic data assimilation2008

    • Author(s)
      R.Yoshida, M.Nagasaki, R.Yamaguchi, S.Imoto, S.Miyano, T.Higuchi
    • Journal Title

      Bioinformatics 24(22)

      Pages: 2592-2601

    • Data Source
      KAKENHI-PROJECT-20680016
  • [Journal Article] Partial order-based Bayesian network learning algorithm for estimating gene networks2008

    • Author(s)
      K. Numata, S. Imoto, S. Miyano
    • Journal Title

      Proc. IEEE Bioinformatics and Biomedicine

      Pages: 357-360

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      R. Yamaguchi, S. Imoto, M, Yamauchi, M. Nagasaki, R. Yosida, T. Shimamura, Y. Hatanaka, K. Ueno, T. Higuchi, N. Gotoh, S.
    • Journal Title

      Genome Informatics 21

      Pages: 101-113

    • NAID

      130003997534

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data2008

    • Author(s)
      K. Kojima, A. Fujita, T. Shimamura, S. Imoto, S. Miyano
    • Journal Title

      Genome Informatics Vol.20

      Pages: 37-51

    • NAID

      130003997510

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Finding optimal Bayesian network given a super-structure2008

    • Author(s)
      E. Perrier, S. Imoto, S. Miyano
    • Journal Title

      Journal of Machine Learning Research Vol. 9

      Pages: 2251-2286

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Finding optimal Bayesian network given a super-structure2008

    • Author(s)
      E. Perrier, S. Imoto, S. Miyano
    • Journal Title

      Journal of Machine Learning Research 9

      Pages: 2251-2286

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Journal Article] Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data2008

    • Author(s)
      Kojima, K., Fujita, A., Shimamura, T., Imoto, S., Miyano, S.
    • Journal Title

      Genome Informatics 20

      Pages: 37-51

    • NAID

      130003997510

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      R. Yamaguchi, S. Imoto, M. Yamauchi, M. Nagasaki, R. Yoshida, T. Shimamura, Y. Hatanaka, K. Ueno, T. Higuchi, N. Gotoh, S. Miyano
    • Journal Title

      Genome Informatics 21:

      Pages: 101-113

    • NAID

      130003997534

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models2008

    • Author(s)
      Hirose, O., Yoshida, R., Imoto, S. Yamaguchi, R. Higuchi, T., Charnock Jones, D. S. Print, C. Miyano, S.
    • Journal Title

      Bioinformatics 24(7)

      Pages: 932-942

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Finding module-based gene networks with state-space models? Mining high-dimensional and short time-course gene expression data.2007

    • Author(s)
      Yamaguchi, R., Yoshida, T., Imoto, S., Higuchi, T., Miyano, S.
    • Journal Title

      IEEE Signal Processing Magazine. 24(1)

      Pages: 37-46

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] A structure learning algorithm for inference of gene networks from microarray gene express ion data using Bayesian networks2007

    • Author(s)
      Numata, K., Imoto, S., Miyano, S.
    • Journal Title

      Proc. IEEE 7th International Symposium on Bioinformatics & Bioengineering 7

      Pages: 1280-1284

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Statistical absolute evaluation of gene ontology terms with gene expression data2007

    • Author(s)
      P.K. Gupta, R. Yoshida, S. Imoto, R. Yamaguchi and S. Miyano
    • Journal Title

      Lecture Note in Bioinformatics 4463

      Pages: 146-157

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Identification of activated transcription factors from microarray gene expression data of Kampo-medicine treated mice2007

    • Author(s)
      Yamaguchi, R., Yamamoto, M., Imoto, S., Nagasaki, M., Yoshida, R., Tsujii, K., Ishiga, A., Asou, H., Watanabe, K., Miyano, S.
    • Journal Title

      Genome Informatics 18

      Pages: 119-129

    • NAID

      130003812136

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Understanding endothelial cell apoptosis:What can the transcriptome glycome and proteome reveal?2007

    • Author(s)
      Affara, M., Dunmore, B., Savoie, CJ., Imoto, S., Tamada, Y., Araki, H., Charnock-Jones, D.S., Miano, S., Print, C.
    • Journal Title

      Philosophical Transactions of Royal Society B 362(1484)

      Pages: 1469-1487

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Identification of activated transcription factors from microarray gene expression data of Kampo-medicine treated mice2007

    • Author(s)
      Yamaguchi, R., Yamamoto, M., Imoto, S., Nagasaki, M. Ybshida, R., Tsujii, K., Ishiga, A., Asou, H., Watanabe, K., Miano, S.
    • Journal Title

      Genome Informatics 18

      Pages: 119-129

    • NAID

      130003812136

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Understanding endothelial cell apoptosis : What can the transcriptome glycome and proteome reveal2007

    • Author(s)
      Affara, M., Dunmore, B., Savoie, C.J., Imoto, S., Tamada, Y., Araki, H., Charnock-Jones, D.S., Miyano, S., Print, C.
    • Journal Title

      Philosophical Transactions of Royal Society 362(1484)

      Pages: 1469-1487

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] グラフマイニングとその統計的モデリングへの応用2007

    • Author(s)
      鷲尾隆, 樋口知之, 井元清哉, 玉田嘉紀, 佐藤健, 元田浩
    • Journal Title

      予測と発見 Vol.54,No.2

      Pages: 315-331

    • NAID

      120006019046

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Computational discovery of aberrant splice variations with genome-wide exon expression profiles2007

    • Author(s)
      Yoshida, R., Numata, K., Imoto, S., Nagasaki, M., Doi, A., Ueno, K., Miyano, S.
    • Journal Title

      Proc. IEEE 7th International Symposium on Bioinformatics & Bioengineering 7

      Pages: 715-722

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data2007

    • Author(s)
      T. Shimamura, R. Yamaguchi, S. Imoto and S. Miyano
    • Journal Title

      Genome Informatics 19

      Pages: 142-153

    • NAID

      130003812157

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Statistical absolute evaluation of gene ontology terms with gene expression data2007

    • Author(s)
      Gupta, P.K., Yoshida, R., Imoto, S., Yamaguchi, R., Miyano, S.
    • Journal Title

      Lecture Notes in Bioinformatics 4463

      Pages: 146-157

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Clustering with time course gene expression profiles and the mixture of state space models2007

    • Author(s)
      Hirose. O., Yoshida, R., Yamaguchi, R., Imoto, S., Higuchi, T., Miyano, S.
    • Journal Title

      Genome Informatics 18

      Pages: 258-266

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Finding module-based gene networks with state-space models-Mining high-dimensional and short time-course gene expression data, Special Issue on Signal Processing Methods in Genomics and Proteomics2007

    • Author(s)
      R. Yamaguchi, R. Yoshida, S. Imoto, T. Higuchi, S. Miyano
    • Journal Title

      IEEE Signal Processing Magazine Vol.24,No.1

      Pages: 37-46

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Journal Article] Analysis of gene networks for drug target discovery and validation2007

    • Author(s)
      Imoto, S., Tamada, Y., Savoie, C.J., Miyano, S.
    • Journal Title

      Methods in Molecular Biology 360

      Pages: 33-56

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Clustering with time course gene expression profiles and the mixture of state space models2007

    • Author(s)
      Hirose, O., Yoshida, R., Yamaguchi, R., Imoto, S., Higuchi, T., Miyano, S.
    • Journal Title

      Genome Informatics 18

      Pages: 258-266

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Finding module-based gene networks with state-space models? Mining high-dimensional and short time-course gene expression data2007

    • Author(s)
      Yamaguchi, R., Yoshida, T., Imoto, S., Higuchi, T., Miyano, S.
    • Journal Title

      IEEE Signal Processing Magazine 24・1

      Pages: 37-46

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles2006

    • Author(s)
      R. Yoshida, T. Higuchi, S. Imoto, S. Miyano
    • Journal Title

      Bioinformatics 22

      Pages: 1538-1539

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] ArrayCluster : an analytic tool for clustering, data visualization and module finder on gene expression profiles2006

    • Author(s)
      Yoshida, R., Higuchi, T., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics 22・12

      Pages: 1538-1539

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles2006

    • Author(s)
      Yoshida, R., Higuchi, T., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics 22(12)

      Pages: 1538-1539

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Statistical model selection method to analyze combinatorial effects of SNPs and environmental factors for binary disease2006

    • Author(s)
      R.Nakamichi, S.Imoto, S.Miyano
    • Journal Title

      International Journal on Artificial Intelligence Tools 15・5

      Pages: 711-724

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Estimating gene networks from gene expression data utilizing biological information2006

    • Author(s)
      Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Proceedings of The Institute of Statistical Mathematics 54(2)

      Pages: 333-356

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks Statistical Methodology2006

    • Author(s)
      S.Imoto, T.Higuchi, T.Goto, S.Miyano
    • Journal Title

      Statistical Methodology 3

      Pages: 1-16

    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Genomic Data Assimilation for Estimating Hybrid Functional Petri Net from Time-course Gene Expression Data2006

    • Author(s)
      M. Nagasaki, R. Yamaguchi, R. Yoshida, S. Imoto, A. Doi, Y. Tamada, H. Matsuno, S. Miyano, T. Higuchi
    • Journal Title

      Genome Informatics(IBSB2006) 17, (1)

      Pages: 46-61

    • NAID

      130003812105

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data2006

    • Author(s)
      Nagasaki, M., Yamaguchi, R., Yoshida, R., Imoto, S., Doi, A., Tamada, Y., Matsuno, H., Miyano, S., Higuchi, T.
    • Journal Title

      Genome Informatics 17(1)

      Pages: 46-61

    • NAID

      130003812105

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Analysis of Gene Networks for Drug Target Discovery and Validation2006

    • Author(s)
      S.Imoto, Y.Tamada, C.J.Savoie, S.Miyano
    • Journal Title

      Methods in Molecular Biology 360・1

      Pages: 33-56

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks2006

    • Author(s)
      S.Imoto, T.Higuchi, T.Goto, S.Miyano
    • Journal Title

      Statistical Methodology 3・1

      Pages: 1-16

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data2006

    • Author(s)
      Nagasaki, M., Yamaguchi, R., Yoshida, R., Imoto, S., Doi, A., Tamada, Y., Matsuno, H., Miyano, S., Higuchi, T.
    • Journal Title

      Genome Informatics 17・1

      Pages: 46-61

    • NAID

      130003812105

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] ArrayCluster : an analytic tool for clustering, data visualization and module finder on gene expression profiles2006

    • Author(s)
      R.Yoshida, T.Higuchi, S.Imoto, S.Miyano
    • Journal Title

      Bioinformatics 22・12

      Pages: 1538-1539

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Utilizing heterogeneous genomic data to estimate gene networks2006

    • Author(s)
      Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Proceedings of The Institute of Statistical Mathematics 54・2

      Pages: 315-332

    • NAID

      120006019063

    • Data Source
      KAKENHI-PROJECT-18300097
  • [Journal Article] Genomic data assimilation for estimating hybrid functional petri net from time-course gene expression data2006

    • Author(s)
      M.Nagasaki, R.Yamaguchi, R.Yoshida, S.Imoto, A.Doi, Y.Tamada, H.Matsuno, S.Miyano, T.Higuchi
    • Journal Title

      Genome Informatics 17・1

      Pages: 46-61

    • NAID

      130003812105

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks Statistical Methodology2006

    • Author(s)
      S.Imoto, T.Higuchi, T.Goto, S. Miyano
    • Journal Title

      Statistical Methodology 3

      Pages: 1-16

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data2005

    • Author(s)
      Nariai, N., Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics 21・Suppl 2

    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data2005

    • Author(s)
      N.Nariai, Y.Tamada, S.Imoto, S.Miyano
    • Journal Title

      Bioinformatics 21・S2

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] A Penalized Likelihood Estimation on Transcriptional Module-based Clustering2005

    • Author(s)
      R.Yoshida, S.Imoto, T.Higuchi
    • Journal Title

      Proceedings of 2005 International Workshop on Data Mining and Bioinformatics 3482

      Pages: 389-401

    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Utilizing evolutionary information and gene expression data for estimating gene networks with Bayesian network models2005

    • Author(s)
      Tamada, Y., Bannai, H., Imoto, S., Katayama, T., Kanehisa, M., Miyano, S.
    • Journal Title

      J.Bioinformatics and Computational Biology 3・6

      Pages: 1295-1313

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Estimating gene networks from expression data and binding location data via boolean networks2005

    • Author(s)
      O.Hirose, N.Nariai, Y.Tamada, H.Bannai, S.Imoto, S.Miyano
    • Journal Title

      Lecture Note in Comupter Science 3482

      Pages: 349-356

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data2005

    • Author(s)
      Nariai, N., Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics. 21

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching2005

    • Author(s)
      R.Yoshida, S. Imoto, T. Higuchi
    • Journal Title

      Proceedings of Computational Systems Bioinformatics Conference(CSB2005)

      Pages: 289-298

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genom-wide data2005

    • Author(s)
      Nariai, N., Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics 21・Suppl2

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Gene networks : estimation, modeling and simulation2005

    • Author(s)
      Imoto, S., Matsuno, H., Miyano, S.
    • Journal Title

      Computational Systems Biology(R.Eils and A.Kriete (Eds.))(Academic Press)

      Pages: 205-228

    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] A penalized likelihood estimation on transcriptional module-based clustering2005

    • Author(s)
      R.Yoshida, S.Imoto, T.Higuchi
    • Journal Title

      Lecture Note in Comupter Science 3482

      Pages: 389-401

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Utilizing evolutionary information and gene expression data for estimating gene networks with Bayesian network models2005

    • Author(s)
      Tamada, Y., Bannai, H., Imoto, S., Katayama, T., Kanehisa, M., Miyano, S.
    • Journal Title

      J. Bioinformatics and Computational Biology 3(6)

      Pages: 1295-1313

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Estimating time-dependent gene networks from time series microarray data by dynamic linear models with Markov switching2005

    • Author(s)
      R.Yoshida, S.Imoto, T.Higuchi
    • Journal Title

      Computational Systems Bioinformatics 4

      Pages: 289-298

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] A Penalized Likelihood Estimation on Transcriptional Module-based Clusterintg2005

    • Author(s)
      R.Yoshida, S. Imoto, T. Higuchi
    • Journal Title

      Proceedings of 2005 International Workshop on Data Mining and Bioinformatics 3482

      Pages: 389-401

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Estimating gene networks from expression data and binding location data via Boolean networks2005

    • Author(s)
      Hirose, O., Nariai, N., Tamada, Y., Bannai, H., Imoto, S., Miyano, S.
    • Journal Title

      Lecture Notes in Computer Science. 3482

      Pages: 349-356

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Identifying drug active pathways from gene networks estimated by gene expression data2005

    • Author(s)
      Y.Tamada, S.Imoto, K.Tashiro, S.Kuhara, S.Miyano
    • Journal Title

      Genome Informatics 16・1

      Pages: 182-191

    • NAID

      130003997387

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data2005

    • Author(s)
      S.Imoto, T.Higuchi, S.Kim, E.Jeong, S.Miyano
    • Journal Title

      Proceedings of Computational Methods in Systems Biology 3082

      Pages: 149-160

    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data2005

    • Author(s)
      S. Imoto, T. Higuchi, S. Kim, E. Jeong, S. Miyano
    • Journal Title

      Proceedings of Computational Methods in Systems Biology 3082

      Pages: 149-160

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching2005

    • Author(s)
      R.Yoshida, S.Imoto, T.Higuchi
    • Journal Title

      Proceedings of Computational Systems Bioinformatics Conference (CSB2005)

      Pages: 289-298

    • Data Source
      KAKENHI-PROJECT-17200020
  • [Journal Article] Utilizing evolutionary information and gene expression data for estimating gene regulations with Bayesian network models2005

    • Author(s)
      Y.Tamada, H.Bannai S.Imoto, T.Katayama, M.Kanehisa, S.Miyano
    • Journal Title

      Journal of Bioinformatics and Computational Biology 3・6

      Pages: 1295-1313

    • Data Source
      KAKENHI-PROJECT-17680024
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data2005

    • Author(s)
      Nariai, N., Tamada, Y., Imoto, S., Miyano, S.
    • Journal Title

      Bioinformatics 21

    • Data Source
      KAKENHI-PROJECT-17017008
  • [Journal Article] Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data2005

    • Author(s)
      Nariai, N., Tamada, Y., Imoto, S., hliyano, S.
    • Journal Title

      Bioinformatics 21

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] Residual bootstrapping and median filtering for robust estimation of gene networks from microarray data2005

    • Author(s)
      S.Imoto et al.
    • Journal Title

      Lecture Note in Bioinformatics 3082

      Pages: 149-160

    • Data Source
      KAKENHI-PROJECT-15700231
  • [Journal Article] Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information2004

    • Author(s)
      De Hoon, M.J., Imoto, S., Kobayashi, K., Ogasawara, N., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 9

      Pages: 276-287

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Open source clustering software2004

    • Author(s)
      De Hoon, M.J.L., Imoto, S., Nolan, J., Miyano, S.
    • Journal Title

      Bioinformatics. 20(9)

      Pages: 1453-1454

    • NAID

      130003997165

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks2004

    • Author(s)
      Nariai, N., Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing. 9

      Pages: 336-347

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data2004

    • Author(s)
      Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Biosystems 75(1-3)

      Pages: 57-65

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks2004

    • Author(s)
      S.Imoto et al.
    • Journal Title

      Journal of Bioinformatics and Computational Biology 2(1)

      Pages: 77-98

    • Data Source
      KAKENHI-PROJECT-15700231
  • [Journal Article] Functional discrimination analysis for time-series gene expression data via radial basis function expansion2004

    • Author(s)
      Y.Araki, S.Konishi, S.Imoto
    • Journal Title

      Proc.COMPSTAT 2004

      Pages: 613-620

    • Data Source
      KAKENHI-PROJECT-15700231
  • [Journal Article] Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data2004

    • Author(s)
      Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Biosystems. 75(1-3)

      Pages: 57-65

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks2004

    • Author(s)
      Imoto, S.., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Journal of Bioinformatics and Computational Biology. 2(1)

      Pages: 77-98

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Bayesian network and radial basis function network regression for nonlinear modeling of genetic network2004

    • Author(s)
      Ando, T., Imoto, S., Miyano, S.
    • Journal Title

      Proc. Third International Conference on Information 3

      Pages: 561-564

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information2004

    • Author(s)
      De Hoon, M.J., Imoto, S., Kobayashi, K., Ogasawara, N., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing. 9

      Pages: 276-287

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Functional data analysis of the dynamics of gene regulatory networks2004

    • Author(s)
      Ando, T., Imoto, S., Miyano, S.
    • Journal Title

      Proc. Knowledge Exploration in Life Science Informatics KELSI2004. Lecture Notes in Artificial Intelligence 3303

      Pages: 69-83

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks2004

    • Author(s)
      Nariai, N., Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 9

      Pages: 336-347

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] Functional data analysis of the dynamics of gene regulatory networks2004

    • Author(s)
      Ando, T., Imoto, S., Miyano, S.
    • Journal Title

      Proc. Knowledge Exploration in Life Science Informatics KELSI2004. Lecture Notes in Artificial Intelligence. 3303

      Pages: 69-83

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data2004

    • Author(s)
      De Hoon, M.J.L., Makita, Y., Imoto, S., Kobayashi, K., Ogasawara, N., Nakai, K., Miyano, S.
    • Journal Title

      Bioinformatics 20 (Suppl.1)

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] A mixed factors model for dimension reduction and extraction of a group structure in gene expression data2004

    • Author(s)
      R.Yoshida, T.Higuchi, S.Imoto
    • Journal Title

      Proc.3rd IEEE Computational Systems Bioinformatics

      Pages: 161-172

    • Data Source
      KAKENHI-PROJECT-15700231
  • [Journal Article] Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks2004

    • Author(s)
      Nariai, N., Kim, S., Imoto, S., Miyano S.
    • Journal Title

      Pacific Symposium on Biocomputing 9

      Pages: 336-347

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Bayesian network and radial basis function network regression for nonlinear modeling of genetic network2004

    • Author(s)
      Ando, T., Imoto, S., Miyano, S.
    • Journal Title

      Proc. Third International Conference on Information.

      Pages: 561-564

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks2004

    • Author(s)
      Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      J.Bioinformatics and Computational Biology 2・1

      Pages: 77-98

    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Finding optimal models for small gene networks2004

    • Author(s)
      Ott, S., Imoto, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 9

      Pages: 557-567

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Open source clustering software2004

    • Author(s)
      De Hoon, M.J.L., Imoto, S., Nolan, J., Miyano, S.
    • Journal Title

      Bioinformatics 20(9)

      Pages: 1453-1454

    • NAID

      130003997165

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Finding optimal models for small gene networks2004

    • Author(s)
      Ott, S., Imoto, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing. 9

      Pages: 557-567

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Functional data analysis of the dynamics of gene regulatory networks2004

    • Author(s)
      Ando, T., Imoto, S., Miyano, S.
    • Journal Title

      Lecture Notes in Artificial Intelligence 3303

      Pages: 69-83

    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks2004

    • Author(s)
      Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Journal of Bioinformatics and Computational Biology 2(1)

      Pages: 77-98

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.2004

    • Author(s)
      Nariai, N., Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing. 9

      Pages: 336-347

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15300099
  • [Journal Article] Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data2004

    • Author(s)
      De Hoon, M.J.L., Makita, Y., Imoto, S., Kobayashi, K., Ogasawara, N., Nakai, K., Miyano, S.
    • Journal Title

      Bioinformatics. 20 (Supp1.1)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Bayesian information criteria and smoothing parameter selection in radial basis function networks2004

    • Author(s)
      S.Konishi, T.Ando, S.Imoto
    • Journal Title

      Biometrika 91(1)

      Pages: 27-43

    • Data Source
      KAKENHI-PROJECT-15700231
  • [Journal Article] Inferring gene networks from time series microarray data using dynamic Bayesian networks2003

    • Author(s)
      Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Briefings in Bioinformatics 4(3)

      Pages: 228-235

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations2003

    • Author(s)
      De Hoon, M., Imoto, S., Kobayashi, K., Ogasawara, N., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing. 8

      Pages: 17-28

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations2003

    • Author(s)
      De Hoon, M., Imoto, S., Kobayashi, K., Ogasawara, N., Miyano, S.
    • Journal Title

      Pacific Symposium on Biocomputing 8

      Pages: 17-28

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network2003

    • Author(s)
      Imoto, S., Kim, S., Goto, T., Aburatani, S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Journal of Bioinformatics and Computational Biology 1(2)

      Pages: 231-252

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection2003

    • Author(s)
      Tamada, Y., Kim, S., Bannai, H., Imoto, S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Bioinformatics 19 (Suppl. 2)

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Inferring gene networks from time series microarray data using dynamic Bayesian networks2003

    • Author(s)
      Kim, S., Imoto, S., Miyano, S.
    • Journal Title

      Briefings in Bioinformatics. 4(3)

      Pages: 228-235

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network2003

    • Author(s)
      Imoto, S., Kim, S., Goto, T., Aburatani, S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Journal of Bioinformatics and Computational Biology. 1(2)

      Pages: 231-252

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection2003

    • Author(s)
      Tamada, Y., Kim, S., Bannai, H., Imoto, S., Tashiro, K., Kuhara, S., Miyano, S.
    • Journal Title

      Bioinformatics. 19(Supp1.2)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-15014205
  • [Journal Article] Mixed factors analysis: Unsupervized statistical discrimination with kernel feature extraction2000

    • Author(s)
      R. Yoshida, T. Higuchi, S. Imoto, S. Miyano
    • Journal Title

      Proceedings of The International Workshop on Data-Mining and Statistical Science (DMSS2007) No.25

      Pages: 71-88

    • NAID

      130008079498

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Presentation] Human Genomics and Metagenomics for Creating Future Medicine2023

    • Author(s)
      Seiya Imoto
    • Organizer
      Science Forum Microsoft Research AI4Science
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Presentation] Metagenomics: a Paradigm Shift in Health/Medical Care2022

    • Author(s)
      Seiya Imoto
    • Organizer
      RIEC International Symposium
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Presentation] Prediction of specific pathways in high grade fetal lung adenocarcinoma using gene network analysis2021

    • Author(s)
      Rika Kasajima, Masaki Suzuki,Eigo Shimizu, Yoshinori Tamada, Atsushi Niida, Rui Yamaguchi, Yoichi Furukawa, Satoru Miyano, Seiya Imoto,Tomoyuki Yokose, Yohei Miyagi
    • Organizer
      第80回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-20K09068
  • [Presentation] Metagenome Analysis Leads a Paradigm Shift in Health/Medical Care2021

    • Author(s)
      井元清哉
    • Organizer
      日本免疫学会
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03538
  • [Presentation] Cancer Immunogenomics Analysis of ICGC/PCAWG2018

    • Author(s)
      Seiya Imoto
    • Organizer
      The 77th Annual Meeting of the Japanese Cancer Association
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Presentation] Immuno-genomics pancancer landscape reveals diverse immune escape mechanisms and immune-editing histories2018

    • Author(s)
      Seiya Imoto
    • Organizer
      Biomedical Sciences in the Era of Big Data
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H03328
  • [Presentation] Immuno-Genomic Landscape of PanCancer2017

    • Author(s)
      Seiya Imoto
    • Organizer
      The 13th ICGC Scientific Workshop
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Presentation] がん免疫ゲノムの計算科学的解析2017

    • Author(s)
      井元清哉
    • Organizer
      日本人類遺伝学会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Presentation] コグニティブ・コンピューティングの造血器腫瘍臨床シーケンスへの試験的導入2016

    • Author(s)
      横山和明、遊佐 希、伊藤美香、小林真之、小川弥穂、竹田玲奈、武井智美、越智清純、川俣豊隆、小沼貴晶、加藤せい子、清水英悟、小山尚彦、大野伸広、高橋聡、内丸薫、山口 類、井元清哉、古川洋一、宮野 悟、東條有伸
    • Organizer
      第78回日本血液学会学術集会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-10-13
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Presentation] MYD88 L265P Mutated Splenic Marginal Zone Lymphoma associated with Cold Agglutinin Disease2016

    • Author(s)
      越智清純、横山和明、遊佐 希、伊藤美香、小林真之、小川弥穂、竹田玲奈、武井智美、川俣豊隆、福山朋房、大野伸広、高橋聡、山口 類、内丸薫、井元清哉、古川洋一、宮野 悟、東條有伸
    • Organizer
      第78回日本血液学会学術集会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-10-13
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Presentation] Computational Methods for Cancer Immunogenomics2016

    • Author(s)
      井元清哉
    • Organizer
      The 25th KOGO Annual Conference
    • Place of Presentation
      ソウル、韓国
    • Year and Date
      2016-09-05
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Presentation] WASPの一アミノ酸変異に起因するX連鎖重症好中球減少症の本邦第一例2016

    • Author(s)
      小林真之、横山和明、遊佐 希、川俣豊隆、大野伸広、清水英悟、山口 類、井元清哉、古川洋一、宮野 悟、東條有伸
    • Organizer
      第78回日本血液学会学術集会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-10-13
    • Data Source
      KAKENHI-PROJECT-25280105
  • [Presentation] がんゲノムビッグデータ解析から生命科学・医療へ2015

    • Author(s)
      井元清哉
    • Organizer
      第9回スーパーコンピュータ「京」と創薬・医療の産学連携セミナー
    • Place of Presentation
      ステーションコンファレンス東京501(東京都千代田区)
    • Year and Date
      2015-12-18
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Presentation] Bayesian Method for HLA Genotyping from Whole-Genome Sequencing Data2015

    • Author(s)
      Shuto Hayashi, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto
    • Organizer
      2015 International Workshop on Bioinformatics and Systems Biology
    • Place of Presentation
      Boston, USA
    • Year and Date
      2015-07-19
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H02775
  • [Presentation] Bayesian Method for HLA Genotyping from Whole-Genome Sequencing Data2015

    • Author(s)
      Hayashi, S., Yamaguchi, R., Mizuno, S., Komura, M., Miyano, S., Nakagawa, H., Imoto, S.
    • Organizer
      2015 International Workshop on Bioinformatics and Systems Biology
    • Place of Presentation
      Boston (U.S.A.)
    • Year and Date
      2015-07-21
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H01678
  • [Presentation] がんゲノムビッグデータ解析から生命科学・医療へ2015

    • Author(s)
      井元清哉
    • Organizer
      第9回スーパーコンピュータ「京」と創薬・医療の産学連携セミナー
    • Place of Presentation
      ステーションコンファレンス東京(東京都千代田区)
    • Year and Date
      2015-12-18
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H01678
  • [Presentation] 個別化医療時代の漢方2014

    • Author(s)
      井元清哉
    • Organizer
      NPO健康医療開発機構 第7回シンポジウム
    • Place of Presentation
      学士会館, 東京都
    • Invited
    • Data Source
      KAKENHI-PROJECT-24300111
  • [Presentation] インフルエンザ介入政策における集団免疫を高めるワクチン接種対象群の選択2012

    • Author(s)
      斎藤正也、井元清哉、山口類、坪倉正治、上昌広、中田はる佳、佐藤弘樹、宮野悟、樋口知之
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      北海道大学
    • Data Source
      KAKENHI-PROJECT-23650143
  • [Presentation] NetworkProfiler: UncoveringCancer Heterogeneity in TranscriptomeData2011

    • Author(s)
      Imoto S
    • Organizer
      The 4th International Conference of the ERCIM WG on COMPUTING & STATISTICS
    • Place of Presentation
      London, UK
    • Year and Date
      2011-12-19
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Presentation] NetworkProfiler : Uncovering Cancer Heterogeneity in Transcriptome Data2011

    • Author(s)
      Imoto S
    • Organizer
      The 4th International Conference of the ERCIMWG on COMPUTING & STATISTICS
    • Place of Presentation
      London, UK(招待講演)
    • Year and Date
      2011-12-19
    • Data Source
      KAKENHI-PROJECT-22300099
  • [Presentation] Estimation of macroscopic parameter in agent-based pandemic simulation2011

    • Author(s)
      M. Saito, S. Imoto, R. Yamaguchi, S. Miyano, T. Higuchi
    • Organizer
      13th International Conference on Information Fusion
    • Place of Presentation
      シカゴ、米国
    • Data Source
      KAKENHI-PROJECT-23650143
  • [Presentation] 統計科学と実験システム生物学の融合が実現するバイオマーカー探索2010

    • Author(s)
      Seiya Imoto
    • Organizer
      第25回システムバイオロジー研究会
    • Place of Presentation
      理研横浜
    • Year and Date
      2010-01-14
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Presentation] Transcriptomic Network Comparison Unravels Key Differences in Gene Regulatory Networks Characterizing Cell Conditions2010

    • Author(s)
      S.Imoto
    • Organizer
      Probability and Statistics with Applications in Systems Biology (招待講演)
    • Place of Presentation
      Taiwan
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Statistical Modeling of Dynamic Gene Networks in Cancer2010

    • Author(s)
      Seiya Imoto
    • Organizer
      Winter School in Mathematical and Computational Biology
    • Place of Presentation
      オーストラリア、クイーンズランド大学
    • Year and Date
      2010-07-08
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Constraint Optimal 5earch on Learning Bayesian Network Structure2010

    • Author(s)
      Seiya Imoto
    • Organizer
      The 1st International Workshop on Advanced Methodologies for Bayesian Networks
    • Place of Presentation
      東京キャンパスイノベーションセンター
    • Year and Date
      2010-11-18
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Presentation] Statistical Modeling of Dynamic Gene Networks in Cancer2010

    • Author(s)
      S.Imoto
    • Organizer
      Winter School in Mathematical and Computational Biology (招待講演)
    • Place of Presentation
      University of Queensland, Australia
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Computational Biomarker Identification by Analyzing Time-Course Microarray Gene Expression Data2009

    • Author(s)
      S.Imoto
    • Organizer
      International Symposium of Case Studies involving Statistics and Operations Research for Decision Making : Solving Human Problems in Business, Society, and Scientific Areas, Institute of Mathematical Statistics (招待講演)
    • Place of Presentation
      Japan
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Statistical Inference of Gene Networks for Computational Drug Target Pathway Discovery2009

    • Author(s)
      Seiya Imoto
    • Organizer
      2009 WINTER SCHOOL IN MATHEMATICAL AND COMPUTATIONAL BIOLOGY
    • Place of Presentation
      オーストラリア、クイ-ンズランド大学、ブリスベン
    • Year and Date
      2009-07-09
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Statistical inference of gene networks for computational drug-target pathway discovery2009

    • Author(s)
      S.Imoto
    • Organizer
      Winter School in Mathematical and Computational Biology (招待講演)
    • Place of Presentation
      University of Queensland, Australia
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] 独立成分分析を用いた外生的発現遺伝子同定解析2009

    • Author(s)
      十河泰弘, 清水昌平, 鷲尾隆, 井元清哉
    • Organizer
      人工知能学会第23回全国大会(JSAI 2009)
    • Place of Presentation
      サンポートホール高松(香川県)
    • Year and Date
      2009-06-18
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] Unraveling dynamics of biological networks towards computational drug target discovery2008

    • Author(s)
      S.Imoto
    • Organizer
      Statistical Computation and Visualization 2008 (招待講演)
    • Place of Presentation
      Academia Sinica, Taiwan
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] Unraveling dynamics of biological networks towards computational drug target discovery2008

    • Author(s)
      S. Imoto
    • Organizer
      Statistical Computation and Visualization 2008
    • Place of Presentation
      Academia Sinica, Taiwan
    • Year and Date
      2008-12-03
    • Data Source
      KAKENHI-PROJECT-20680016
  • [Presentation] 生命体データ同化 : 生体内パスウェイシミュレーションと計測データを融合する確率的枠組み2008

    • Author(s)
      井元 清哉
    • Organizer
      科研費特定領域「情報統計力学の深化と展開」平成20年度公開シンポジウム(Invited)
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2008-12-17
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] Predicting differences in gene regulatory systems by state space models2008

    • Author(s)
      R. Yamaguchi, S. Imoto, M. Yamauchi,M. Nagasaki, R. Yoshida, T. Shimamura, Y. Hatanaka, K. Ueno, T. Higuchi,N. Gotoh, S. Miyano
    • Organizer
      The 19th International Conference on Genome Informatics (GIW2008)
    • Place of Presentation
      Gold Coast ,Australia
    • Year and Date
      2008-12-02
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Presentation] Temporal and Spatial Modeling in Systems Biology and Pharmacogenomics2008

    • Author(s)
      Seiya Imoto
    • Organizer
      The Applied Statistics Workshop 2008(Invited)
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2008-11-14
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] バイオマーカー・分子標的探索のための動的ネットワークを予測する計算科学的方法の開発2008

    • Author(s)
      井元清哉
    • Organizer
      分子生物学会BMB2008シンポジュウム
    • Place of Presentation
      神戸ポートピアホテル
    • Year and Date
      2008-12-12
    • Data Source
      KAKENHI-PROJECT-20650039
  • [Presentation] Unraveling dynamics of biological networks towards computational drug target discovery2008

    • Author(s)
      Seiya Imoto
    • Organizer
      Statistical Computation and Visualization 2008 (SCV2008)(lnvited)
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2008-12-02
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] 動的ネットワーク構造探索の計算イニシアティブ2008

    • Author(s)
      井元 清哉
    • Organizer
      分子生物学会BMB2008シンポジウム(Invited)
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2008-12-12
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] バイオマーカー・分子標的探索のための動的ネットワークを 予測する計算科学的方法の開発2008

    • Author(s)
      井元 清哉
    • Organizer
      分子生物学会BMB2008シンポジウム(Invited)
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2008-12-12
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] Partial order-based Bayesian network learning algorithm for estimating gene networks2008

    • Author(s)
      K. Numata, S. Imoto, S. Miyano
    • Organizer
      Proc. of IEEE Bioinformatics and Biomedicine 2008
    • Place of Presentation
      Philadelphia, Pennsylvania (USA)
    • Year and Date
      2008-12-05
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] Clustering with time course gene expression profiles and the mixture of state spase models2007

    • Author(s)
      O. Hirose*, R. Yoshida, R. Yamaguchi,S. Imoto, T. Higuchi, S. Miyano
    • Organizer
      The Seventh Annual International Worksyop on Bioinformatics and Systems Biology (IBSB2007)
    • Place of Presentation
      東京大学医科学研究所
    • Year and Date
      2007-08-02
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Presentation] Bioinformatics approach towards drug target gene discovery2007

    • Author(s)
      井元清哉
    • Organizer
      Regional Biometric Conference 2007
    • Place of Presentation
      東京大学弥生講堂
    • Year and Date
      2007-12-10
    • Data Source
      KAKENHI-PROJECT-17680024
  • [Presentation] DIGDAG, a first algorithm to mine closed frequent embedded sub-DAGs2007

    • Author(s)
      A. Termier, Y. Tamada, K. Numata, S. Imoto, T. Washio, Tomoyuki Higuchi
    • Organizer
      Proc. of MLG Workshop 2007, Mining and Learning with Graphs
    • Place of Presentation
      Firenze(Italy)
    • Year and Date
      2007-08-02
    • Data Source
      KAKENHI-PROJECT-19200013
  • [Presentation] Genomic Data Assimilation for Estimating Hybrid Functional Petri Net from Time-course Gene Expression Data2006

    • Author(s)
      M. Nagasaki, R. Yamaguchi*, R. Yoshida, S. Imoto, A. Doi, Y. Tamada, H. Matsuno, S. Miyano, T. Higuchi
    • Organizer
      The Sixth International Workshop on Bioinformatics and Systems Biology (IBSB2006)
    • Place of Presentation
      Boston,MA USA
    • Year and Date
      2006-07-24
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Presentation] Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching2005

    • Author(s)
      R. Yoshida, S. Imoto, T. Higuchi*
    • Organizer
      Computational Systems Bioinformatics Conference(CSB2005)
    • Place of Presentation
      Stanford, CA USA
    • Year and Date
      2005-08-09
    • Data Source
      KAKENHI-PROJECT-17200020
  • [Presentation] インフルエンザ介入政策における集団免疫を高めるワクチン接種対象群の選択

    • Author(s)
      斎藤正也, 井元清哉, 山口類, 坪倉正治, 上昌広, 中田はる佳, 佐藤弘樹, 宮野悟, 樋口知之
    • Organizer
      2012統計関連学会連合大会
    • Place of Presentation
      北海道大学
    • Data Source
      KAKENHI-PROJECT-23650143
  • [Presentation] Identification of Oncogenic Co-regulators using Infinite Relational Models

    • Author(s)
      Yoichi Chikahara, Atsushi Niida, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
    • Organizer
      The 15th International Conference on Systems Biology (ICSB) 2014
    • Place of Presentation
      メルボルン(オーストラリア)
    • Year and Date
      2014-09-14 – 2014-09-18
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Presentation] Integrated understanding for Hochuekkito on microarray expression data

    • Author(s)
      Kotoe Katayama, Kaori Munakata, Katsuaki Dan, Rui Yamaguchi ,Seiya Imoto, Kenji Watanabe, Satoru Miyano
    • Organizer
      Pacific Symposium on Biocomputing
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2015-01-04 – 2015-01-08
    • Data Source
      KAKENHI-PROJECT-24300111
  • []

  • 1.  MIYANO Satoru (50128104)
    # of Collaborated Projects: 8 results
    # of Collaborated Products: 149 results
  • 2.  YAMAGUCHI Rui (90380675)
    # of Collaborated Projects: 8 results
    # of Collaborated Products: 57 results
  • 3.  NAGASAKI Masao (90396862)
    # of Collaborated Projects: 4 results
    # of Collaborated Products: 31 results
  • 4.  BANNAI Hideo (20323644)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 3 results
  • 5.  TAMADA Yoshinori (80435495)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 11 results
  • 6.  TERMIER Alexandre (60435823)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 7.  WATANABE Kenji (70191757)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 2 results
  • 8.  HIGUCHI Tomoyuki (70202273)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 18 results
  • 9.  YOSHIDA Ryo (70401263)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 17 results
  • 10.  UENO Genta (40370093)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 2 results
  • 11.  SOMEYA Hiroshi (00333518)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 12.  INOKUCHI Akihiro (70452456)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 13.  SHIRAISHI Yuichi (70516880)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 12 results
  • 14.  SHIMAMURA Teppei (00623943)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 17 results
  • 15.  GOTOH Noriko (10251448)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 6 results
  • 16.  Nakagawa Hidewaki (50361621)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 3 results
  • 17.  Kasajima Rika (20630875)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 18.  片山 琴絵 (40581195)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 19.  植松 智 (50379088)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 5 results
  • 20.  MATSUNO Hiroshi (10181744)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 21.  KAWASAKI Yoshinori (70249910)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 22.  ISHIGAKI Tsukasa (20469597)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 23.  HISHIKI Teruyoshi (30324271)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 24.  WASHIO Takashi (00192815)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 25.  KANO Yutaka (20201436)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 11 results
  • 26.  OHARA Kouzou (30294127)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 27.  SHIMIZU Shohei (10509871)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 28.  KAWAHARA Yoshinobu (00514796)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 29.  KAYANO Mitsunori (20590095)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 30.  OHM Shinobu (20160046)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 31.  AKUTSU Tatsuya (90261859)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 32.  TOJO Arinobu (00211681)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 33.  FURUKAWA Yoichi (20272560)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 5 results
  • 34.  Tanaka Hirotoshi (00171794)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 35.  AOSHIMA Makoto (90246679)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 36.  YOKOYAMA KAZUAKI (00647498)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 37.  水野 晋一 (40569430)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 38.  PARK HEEWON (70756642)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 6 results
  • 39.  新井田 厚司 (00772493)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 40.  張 耀中 (60817138)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 41.  山上 裕機 (20191190)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 42.  相方 浩 (30403512)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 43.  中村 透 (70645796)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 44.  二階堂 愛 (00383290)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 45.  宇野 力 (20282155)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 46.  金森 敬文 (60334546)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 47.  蛭川 潤一 (10386617)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 48.  矢田 和善 (90585803)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 49.  廣瀬 慧 (40609806)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 50.  星野 伸明 (00313627)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 51.  柳原 宏和 (70342615)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 52.  小森 理 (60586379)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 53.  竹之内 高志 (50403340)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 54.  松井 秀俊 (90633305)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 55.  植木 優夫 (10515860)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 56.  鈴木 大慈 (60551372)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 57.  廣島 幸彦 (60718021)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 58.  木村 晋也 (80359794)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 59.  石井 敬人 (90814294)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 60.  湯上 伸弘 (30417183)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 61.  植村 元秀 (40631015)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 62.  宮城 洋平 (00254194)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 63.  鈴木 理樹 (00770108)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 64.  山口 貴世志 (50466843)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 65.  土井 敦
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 66.  DE Hoon Michiel J.L.
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 67.  HOON Michiel J.I. de
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 68.  DE Hoon L.J.Michiel
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 69.  DEHOON L. J. Michiel
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 70.  IKENOUE Tsuneo
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 71.  UENO Masaki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 72.  SUGIMOTO Ken
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 73.  HOSODA Fumie
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 74.  TOTOKI Yasushi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 75.  MATSYBARA Daisuk
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 76.  SATO Shinya
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 77.  WASHIMI Kota
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 78.  村松 智輝
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 79.  藤本 明洋
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 80.  佐藤 憲明
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 81.  山本 健
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 82.  俣野 哲朗
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 83.  藤本 康介
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 3 results
  • 84.  高橋 隆
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 85.  六反 一仁
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 86.  速水 晋也
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 87.  飯沼 久恵
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 88.  天野 睦紀
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 89.  柴田 龍弘
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 90.  植松 未帆
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 91.  小沼 貴晶
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 92.  村岡 大輔
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 93.  谷本 幸介
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 94.  稲澤 譲治
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

URL: 

Are you sure that you want to link your ORCID iD to your KAKEN Researcher profile?
* This action can be performed only by the researcher himself/herself who is listed on the KAKEN Researcher’s page. Are you sure that this KAKEN Researcher’s page is your page?

この研究者とORCID iDの連携を行いますか?
※ この処理は、研究者本人だけが実行できます。

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi